Query FD01845354_01428 peptidase M23
Match_columns 133
No_of_seqs 110 out of 192
Neff 4.53794
Searched_HMMs 86581
Date Tue Feb 27 20:33:28 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6543234.hhr -oa3m ../results/6543234.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8TZL_E Peptidase M23; membrane 99.6 2.2E-14 2.5E-19 112.6 10.6 99 5-105 272-373 (382)
2 6JMY_A Peptidase M23; Peptidog 99.3 3.2E-11 3.7E-16 93.2 10.9 97 16-131 149-248 (262)
3 2HSI_B Putative peptidase M23; 99.3 1.4E-10 1.6E-15 91.3 11.5 97 17-132 181-280 (282)
4 4RNZ_A Conserved hypothetical 99.2 1.7E-10 2E-15 93.9 11.4 113 2-133 205-321 (371)
5 6RK4_A Lysostaphin; Peptidogly 99.2 1E-09 1.2E-14 89.4 13.5 113 2-132 263-385 (493)
6 3TUF_B Stage II sporulation pr 99.2 7.2E-10 8.3E-15 84.7 10.8 110 4-132 55-185 (245)
7 4LXC_D Lysostaphin; PEPTIDASE 99.1 7.9E-09 9.1E-14 77.2 12.5 106 8-131 24-138 (255)
8 3NYY_A Putative glycyl-glycine 99.1 4.6E-09 5.3E-14 80.9 11.3 107 5-130 112-239 (252)
9 1QWY_A peptidoglycan hydrolase 98.8 1.5E-07 1.7E-12 78.7 12.2 111 3-132 173-291 (291)
10 6TPI_A Murein hydrolase activa 98.8 3.6E-07 4.2E-12 70.8 11.5 110 3-131 274-386 (386)
11 6UE4_B ShyA endopeptidase; End 98.6 1.5E-06 1.7E-11 70.9 11.8 112 2-132 252-366 (399)
12 5J1L_A ToxR-activated gene (Ta 98.6 2.9E-06 3.3E-11 64.0 11.6 109 3-130 48-165 (216)
13 8I6O_E Membrane-bound metallop 98.5 3.4E-06 3.9E-11 67.7 12.1 108 6-132 296-408 (409)
14 4BH5_D MUREIN HYDROLASE ACTIVA 98.5 1.4E-05 1.6E-10 50.3 11.4 109 4-131 31-142 (142)
15 2GU1_A Zinc peptidase; Zinc Pe 98.5 3E-06 3.4E-11 67.5 10.2 119 8-129 223-345 (361)
16 6MUK_A Peptidase M23; Structur 98.5 3.3E-06 3.8E-11 70.1 10.5 101 14-133 264-366 (401)
17 6SMK_A Peptidase_M23 domain-co 98.4 3.6E-05 4.2E-10 50.3 12.2 113 3-133 15-134 (142)
18 4QP5_B Lysostaphin; Peptidase 98.3 7.3E-05 8.4E-10 47.5 12.0 101 14-132 31-139 (140)
19 5J1K_A ToxR-activated gene (Ta 98.3 5.6E-05 6.5E-10 56.8 11.9 111 1-130 49-165 (216)
20 5J1L_D ToxR-activated gene (Ta 98.0 0.00032 3.7E-09 49.3 11.3 107 5-130 34-146 (189)
21 4ZYB_D Glycyl-glycine endopept 98.0 0.0011 1.3E-08 41.1 12.4 111 4-132 17-134 (134)
22 6YJ1_A ORF007; zinc metallopep 98.0 0.00036 4.2E-09 49.5 10.8 91 13-104 58-155 (186)
23 5B0H_B Leukocyte cell-derived 98.0 0.00078 9E-09 42.7 11.0 93 2-99 24-125 (135)
24 7QRL_B DipM; LytM factor Autol 97.9 0.0011 1.3E-08 41.6 11.1 94 10-104 31-127 (143)
25 5KQB_A Peptidase M23; lysostap 97.8 0.003 3.4E-08 40.4 12.0 111 6-133 17-136 (145)
26 8AF1_A Peptidase M23; ELASTASE 97.8 0.00094 1.1E-08 49.3 10.9 95 2-104 18-131 (179)
27 3UZ0_B Stage II sporulation pr 97.8 0.001 1.2E-08 45.2 9.9 91 10-102 44-142 (152)
28 PF01551.26 ; Peptidase_M23 ; P 97.6 0.0057 6.6E-08 33.8 10.6 86 15-103 1-90 (95)
29 3IT5_G Protease lasA; metallop 97.6 0.0032 3.7E-08 46.0 10.3 83 14-103 30-129 (182)
30 3CSQ_D Morphogenesis protein 1 97.4 0.0031 3.6E-08 49.4 9.3 88 16-104 191-288 (334)
31 6IK4_A Elastinolytic metallopr 97.2 0.019 2.2E-07 41.5 10.4 83 14-103 28-127 (173)
32 5GT1_A Choline binding protein 97.2 0.032 3.7E-07 38.1 11.0 111 14-133 55-171 (174)
33 5KVP_A Zoocin A endopeptidase; 96.9 0.079 9.2E-07 36.7 10.9 90 12-103 29-129 (159)
34 2F3G_A GLUCOSE-SPECIFIC PHOSPH 96.4 0.045 5.1E-07 40.7 7.4 60 22-85 52-122 (168)
35 PF00358.24 ; PTS_EIIA_1 ; phos 96.3 0.049 5.7E-07 36.3 6.8 66 15-85 25-101 (125)
36 2GPR_A GLUCOSE-PERMEASE IIA CO 96.2 0.061 7.1E-07 38.3 7.0 66 15-85 34-110 (154)
37 1GPR_A GLUCOSE PERMEASE; PHOSP 95.9 0.092 1.1E-06 38.5 7.0 58 24-85 47-115 (162)
38 8H02_A DNA-directed RNA polyme 95.7 0.1 1.2E-06 33.2 5.9 66 23-90 1-84 (84)
39 1F3Z_A GLUCOSE-SPECIFIC PHOSPH 95.5 0.12 1.4E-06 37.7 6.5 58 24-85 47-115 (161)
40 PF01333.23 ; Apocytochr_F_C ; 93.5 0.47 5.4E-06 33.3 5.4 58 26-84 2-62 (118)
41 PF06898.15 ; YqfD ; Putative s 93.2 0.19 2.2E-06 43.6 3.6 37 23-82 174-212 (367)
42 6GAP_A Outer capsid protein si 91.9 0.26 3E-06 40.3 2.7 60 6-67 187-250 (261)
43 2LMC_B DNA-directed RNA polyme 91.7 1 1.2E-05 30.9 5.1 60 23-84 20-83 (84)
44 5C22_B Chromosomal hemolysin D 90.9 1 1.2E-05 34.7 4.8 45 27-99 235-279 (279)
45 5C22_B Chromosomal hemolysin D 89.5 0.6 6.9E-06 35.9 2.6 29 27-85 4-34 (279)
46 PF00529.24 ; CusB_dom_1 ; Cati 89.2 0.99 1.1E-05 36.5 3.7 35 21-85 24-61 (363)
47 PF13437.10 ; HlyD_3 ; HlyD fam 88.0 3.4 3.9E-05 25.9 4.9 39 28-100 1-41 (102)
48 7SGR_L Membrane fusion protein 87.1 1.4 1.6E-05 35.7 3.4 28 28-85 98-127 (356)
49 5NEN_B Lipase C; lipase, hydro 85.6 3.7 4.2E-05 35.0 5.2 44 26-100 271-315 (448)
50 3FPP_B Macrolide-specific effl 85.5 2 2.4E-05 34.5 3.5 28 28-85 33-62 (341)
51 3T53_C Cation efflux system pr 84.8 2.2 2.6E-05 35.0 3.5 30 28-85 46-76 (336)
52 4TKO_B EmrA; MFS, Multidrug re 84.6 1.9 2.2E-05 34.9 3.1 28 28-85 22-51 (358)
53 8DCK_D Membrane fusion protein 84.1 1.8 2.1E-05 36.8 2.8 29 27-85 97-127 (478)
54 4TKO_B EmrA; MFS, Multidrug re 83.7 5.4 6.2E-05 32.4 5.2 41 26-100 219-261 (358)
55 1Q90_A Apocytochrome f; MEMBRA 82.2 3.6 4.1E-05 36.6 3.9 74 9-82 151-228 (292)
56 3LNN_A Membrane fusion protein 82.2 3.1 3.6E-05 33.9 3.3 28 28-85 59-88 (359)
57 4EPI_A Pesticin, Lysozyme Chim 82.0 0.88 1E-05 39.1 0.2 77 56-132 21-137 (330)
58 2F1M_B Acriflavine resistance 81.9 3.2 3.7E-05 32.5 3.2 28 28-85 24-53 (277)
59 5NG5_B Multidrug efflux pump s 81.8 3.2 3.7E-05 34.2 3.3 28 28-85 43-72 (373)
60 1VF7_H Multidrug resistance pr 81.6 3.1 3.6E-05 34.4 3.2 29 27-85 44-74 (369)
61 PF16576.9 ; HlyD_D23 ; Barrel- 81.4 3.4 3.9E-05 30.9 3.1 28 28-85 21-51 (224)
62 2QJ8_A Mlr6093 protein; Struct 81.1 4 4.6E-05 33.9 3.6 29 27-85 258-287 (332)
63 4L8J_A Putative efflux transpo 80.8 4.6 5.3E-05 32.3 3.8 28 28-85 36-65 (328)
64 5NEN_B Lipase C; lipase, hydro 80.6 3.3 3.9E-05 35.2 3.1 28 28-85 44-73 (448)
65 PF12700.11 ; HlyD_2 ; HlyD fam 78.7 4.8 5.5E-05 33.6 3.4 27 29-85 67-94 (420)
66 1E2W_B CYTOCHROME F; ELECTRON 78.3 6.2 7.2E-05 34.2 4.0 74 9-82 151-228 (251)
67 PF07831.17 ; PYNP_C ; Pyrimidi 78.3 3.5 4E-05 26.6 2.0 15 71-85 38-53 (75)
68 PF16576.9 ; HlyD_D23 ; Barrel- 78.0 13 0.00015 27.9 5.2 39 28-100 120-160 (224)
69 4DK1_A Putative MacA, Multidru 77.4 6.3 7.2E-05 32.1 3.7 28 28-85 34-63 (341)
70 PF04952.18 ; AstE_AspA ; Succi 76.4 8.3 9.6E-05 30.1 4.0 29 27-85 206-235 (272)
71 8EIP_C Succinylglutamate desuc 76.3 6.7 7.7E-05 32.8 3.6 29 27-85 293-322 (370)
72 3NE5_C Cation efflux system pr 76.3 6.5 7.5E-05 34.0 3.7 30 28-85 123-153 (413)
73 7OGR_C PHIKZ071,DNA-directed R 74.6 14 0.00016 35.6 5.6 55 29-84 67-154 (700)
74 1UOU_A THYMIDINE PHOSPHORYLASE 74.1 2.1 2.5E-05 38.4 0.3 49 27-85 373-432 (474)
75 1HCZ_A CYTOCHROME F; ELECTRON 73.4 11 0.00012 32.8 4.2 73 9-82 151-227 (252)
76 PF00529.24 ; CusB_dom_1 ; Cati 72.6 8.8 0.0001 31.2 3.4 30 28-85 224-253 (363)
77 3CDX_C Succinylglutamatedesucc 69.7 13 0.00015 31.7 3.9 29 27-85 268-297 (354)
78 3FMC_D Putative succinylglutam 69.7 11 0.00012 32.2 3.4 28 28-85 292-320 (368)
79 8A1W_A Na(+)-translocating NAD 69.5 6 6.9E-05 35.4 2.0 14 71-84 67-81 (468)
80 2XHC_A TRANSCRIPTION ANTITERMI 69.1 25 0.00028 30.0 5.4 57 20-83 75-138 (352)
81 7S00_E DNA-directed RNA polyme 68.8 26 0.00029 33.4 5.9 55 29-84 74-146 (665)
82 5XU0_C Membrane-fusion protein 68.2 7.7 8.9E-05 30.8 2.2 15 71-85 31-46 (273)
83 3T53_C Cation efflux system pr 67.2 14 0.00016 30.5 3.4 30 27-85 131-161 (336)
84 7B9K_T Dihydrolipoyllysine-res 66.5 12 0.00014 34.0 3.3 28 28-85 45-74 (630)
85 6RQF_K Cytochrome f; Plastoqui 65.9 16 0.00018 32.4 3.8 73 9-82 151-227 (285)
86 PF05896.15 ; NQRA ; Na(+)-tran 65.7 8.4 9.7E-05 31.0 1.9 14 71-84 46-60 (258)
87 1CI3_M PROTEIN (CYTOCHROME F); 65.1 31 0.00036 30.4 5.3 72 7-82 152-227 (249)
88 2F1M_B Acriflavine resistance 64.8 28 0.00033 27.3 4.6 41 27-100 131-174 (277)
89 1YW4_A Succinylglutamate desuc 64.8 7.7 8.9E-05 33.0 1.6 18 69-86 277-295 (341)
90 7ZYV_C Cytochrome f; cytochrom 64.6 24 0.00028 32.0 4.7 73 9-82 186-262 (320)
91 5XU0_C Membrane-fusion protein 64.6 31 0.00035 27.5 4.8 41 26-100 139-182 (273)
92 PF12700.11 ; HlyD_2 ; HlyD fam 64.3 26 0.0003 29.4 4.6 40 28-100 203-271 (420)
93 4U9O_A Na(+)-translocating NAD 64.0 9.2 0.00011 32.8 2.0 14 71-84 48-62 (360)
94 4L8J_A Putative efflux transpo 63.9 37 0.00042 27.3 5.2 42 26-99 128-171 (328)
95 7ZC6_C RnfC; Rnf, flavin, iron 63.5 8.9 0.0001 33.7 1.8 14 71-84 49-63 (435)
96 7R0W_C Cytochrome f; Complex, 63.5 19 0.00022 32.9 3.8 70 9-82 196-270 (328)
97 3NH4_A Aspartoacylase-2; Merca 61.9 10 0.00012 31.5 1.9 23 63-85 249-272 (327)
98 8AHX_C Ion-translocating oxido 61.6 7.3 8.4E-05 35.0 1.0 14 71-84 51-65 (496)
99 6VEJ_Q Probable Resistance-Nod 61.5 28 0.00032 32.1 4.6 41 27-99 504-546 (695)
100 7SFR_W 50S ribosomal protein L 61.5 14 0.00016 26.6 2.2 28 10-37 39-67 (86)
101 5ZX3_C DNA-directed RNA polyme 61.4 31 0.00036 35.2 5.2 59 26-84 635-700 (1174)
102 2JXM_B Cytochrome f; Copper, E 61.0 17 0.0002 31.6 3.0 72 9-82 153-227 (249)
103 6VEJ_Q Probable Resistance-Nod 59.8 18 0.00021 33.2 3.2 29 27-85 39-69 (695)
104 PF21668.1 ; RPOC_hybrid ; DNA- 57.6 66 0.00076 25.6 5.3 55 28-84 9-78 (112)
105 4DK1_A Putative MacA, Multidru 56.2 42 0.00049 27.5 4.4 43 27-100 127-171 (341)
106 PF01016.23 ; Ribosomal_L27 ; R 55.8 25 0.00029 24.8 2.7 29 10-38 38-67 (79)
107 7S0S_Y 50S ribosomal protein L 55.6 24 0.00028 25.0 2.6 29 10-38 32-61 (79)
108 4Y4O_20 50S ribosomal protein 55.2 21 0.00025 25.6 2.3 28 10-37 39-67 (85)
109 4H44_C Apocytochrome f; Alpha 54.1 36 0.00041 30.6 3.9 74 9-82 152-231 (289)
110 6VEJ_Q Probable Resistance-Nod 53.7 31 0.00036 31.7 3.6 28 28-85 397-426 (695)
111 7ZXY_K Cytochrome f; cytochrom 53.7 28 0.00032 31.1 3.2 70 9-82 152-226 (284)
112 2Q4Z_A Aspartoacylase; Ensembl 53.0 14 0.00017 30.5 1.3 16 70-85 247-263 (312)
113 6VEJ_Q Probable Resistance-Nod 52.2 63 0.00073 29.8 5.3 41 27-100 147-188 (695)
114 8B0X_v 50S ribosomal protein L 51.9 24 0.00028 25.2 2.1 28 10-37 39-67 (85)
115 8A57_Z 50S ribosomal protein L 51.9 24 0.00028 25.9 2.2 28 10-37 47-75 (96)
116 1VF7_H Multidrug resistance pr 50.8 68 0.00078 26.8 4.8 40 27-100 138-181 (369)
117 8FN2_Y 50S ribosomal protein L 50.8 31 0.00036 24.2 2.5 29 10-38 32-61 (74)
118 2FTC_O Mitochondrial 39S ribos 50.7 23 0.00027 24.0 1.8 28 10-37 39-67 (69)
119 3NE5_C Cation efflux system pr 50.7 37 0.00043 29.5 3.4 31 26-85 207-238 (413)
120 8DCK_D Membrane fusion protein 50.3 1E+02 0.0012 26.5 6.0 51 27-77 328-387 (478)
121 7JIL_W 50S ribosomal protein L 49.8 26 0.0003 25.2 2.1 29 10-38 39-68 (86)
122 4EAD_A Thymidine phosphorylase 49.3 22 0.00026 31.7 2.0 15 71-85 387-402 (440)
123 3NA6_A Succinylglutamate desuc 49.0 22 0.00026 29.3 1.8 15 71-85 272-287 (331)
124 4V84_DW 50S ribosomal protein 48.9 29 0.00033 24.4 2.1 28 10-37 30-58 (76)
125 6S0Z_U 50S ribosomal protein L 47.8 30 0.00035 24.3 2.1 28 10-37 31-59 (77)
126 6XZ7_W 50S ribosomal protein L 47.8 28 0.00033 24.4 1.9 28 10-37 30-58 (76)
127 2DSJ_B Pyrimidine-nucleoside ( 47.5 25 0.00029 31.3 2.0 15 71-85 374-389 (423)
128 4KKU_C Membrane fusion protein 47.3 42 0.00048 27.5 3.1 28 28-85 54-83 (296)
129 2BCO_B Succinylglutamate desuc 47.1 23 0.00026 30.3 1.6 19 68-86 278-297 (350)
130 4GA4_A Putative thymidine phos 46.8 26 0.0003 31.4 2.0 14 72-85 373-386 (440)
131 7CNW_A Phosphatidylserine deca 46.7 54 0.00062 27.4 3.7 55 29-84 146-249 (253)
132 7YBU_B Propionyl-CoA carboxyla 46.7 40 0.00046 31.4 3.2 28 28-85 661-690 (728)
133 PF02666.19 ; PS_Dcarbxylase ; 46.3 24 0.00028 27.3 1.5 16 24-40 11-26 (162)
134 3D4R_C Domain of Unknown Funct 44.0 30 0.00034 28.8 1.8 22 64-85 106-131 (169)
135 PF00364.26 ; Biotin_lipoyl ; B 43.6 46 0.00053 18.7 2.1 14 72-85 23-36 (73)
136 PF09891.13 ; DUF2118 ; Unchara 43.6 30 0.00035 28.5 1.7 22 64-85 100-125 (162)
137 3FPP_B Macrolide-specific effl 41.6 97 0.0011 25.2 4.3 43 27-100 154-198 (341)
138 4U9O_A Na(+)-translocating NAD 41.5 57 0.00066 28.2 3.2 31 24-54 66-96 (360)
139 3FMC_D Putative succinylglutam 41.4 76 0.00088 27.2 3.9 39 19-87 321-363 (368)
140 5NG5_B Multidrug efflux pump s 40.2 69 0.00079 26.6 3.3 35 26-90 149-187 (373)
141 2JUB_A Internal protein I; IpI 40.1 69 0.0008 23.9 2.9 40 25-66 15-55 (76)
142 PF11634.12 ; IPI_T4 ; Nuclease 40.1 69 0.0008 23.9 2.9 40 25-66 15-55 (76)
143 8A1W_A Na(+)-translocating NAD 39.9 71 0.00083 28.8 3.6 34 24-57 85-118 (468)
144 PF10011.13 ; DUF2254 ; Predict 39.8 20 0.00024 31.6 0.3 43 23-85 193-245 (368)
145 PF02749.20 ; QRPTase_N ; Quino 39.5 53 0.00061 22.9 2.3 15 71-85 53-68 (90)
146 4OGQ_C Apocytochrome f; Electr 39.5 1.1E+02 0.0012 28.5 4.7 73 9-82 196-275 (333)
147 2XHA_B TRANSCRIPTION ANTITERMI 39.1 1.7E+02 0.0019 23.1 5.1 52 28-84 42-99 (193)
148 2A6H_M DNA-directed RNA polyme 38.9 79 0.00091 32.0 4.1 55 29-83 595-656 (1119)
149 4GA6_A Putative thymidine phos 38.1 41 0.00047 31.4 2.0 15 71-85 454-469 (513)
150 7P6Z_u 50S ribosomal protein L 38.1 49 0.00057 24.9 2.0 28 10-37 53-81 (104)
151 7M7K_B Pyrimidine-nucleoside p 37.9 40 0.00047 30.1 1.8 15 71-85 387-402 (438)
152 6ERI_AW 50S ribosomal protein 37.6 58 0.00066 25.2 2.4 28 10-37 36-64 (114)
153 4IQZ_E DNA-directed RNA polyme 37.5 1.9E+02 0.0022 23.2 5.4 51 23-84 57-108 (250)
154 8SYI_Z DNA-directed RNA polyme 37.4 1.5E+02 0.0017 31.9 5.8 69 15-85 342-428 (1318)
155 2KCC_A Acetyl-CoA carboxylase 37.1 64 0.00074 20.2 2.2 15 71-85 21-36 (84)
156 4KKU_C Membrane fusion protein 36.3 1.9E+02 0.0022 23.8 5.2 44 27-101 95-139 (296)
157 5OLN_A Pyrimidine-nucleoside p 36.1 44 0.00051 29.8 1.8 15 71-85 383-398 (434)
158 1DD2_A TRANSCARBOXYLASE 1.3S S 36.1 70 0.00081 18.7 2.2 14 72-85 26-39 (77)
159 3U9T_A Methylcrotonyl-CoA carb 35.8 2.4E+02 0.0028 26.2 6.3 65 19-85 525-613 (655)
160 5X8T_X protein L27; Cryo-EM, r 35.7 61 0.0007 26.0 2.3 28 10-37 38-66 (137)
161 PF16886.9 ; ATP-synt_ab_Xtn ; 35.6 62 0.00071 24.3 2.2 18 68-85 38-56 (121)
162 8DKC_C DNA-directed RNA polyme 35.3 1.2E+02 0.0014 31.3 4.8 44 26-84 677-752 (1269)
163 3LNN_A Membrane fusion protein 35.3 1.8E+02 0.0021 24.0 5.0 39 28-100 172-213 (359)
164 6XYW_Aw 50S ribosomal protein 34.2 1.2E+02 0.0014 24.9 3.7 45 10-55 84-129 (154)
165 5CSK_B Acetyl-CoA carboxylase; 34.0 73 0.00084 35.4 3.2 33 26-88 679-713 (2218)
166 1YW6_A Succinylglutamate desuc 33.2 42 0.00049 28.3 1.2 16 71-86 273-293 (335)
167 2AUJ_D DNA-directed RNA polyme 32.8 1.8E+02 0.0021 25.0 4.8 58 24-84 100-160 (309)
168 PF18298.5 ; NusG_add ; NusG ad 32.7 56 0.00065 25.8 1.6 45 28-84 4-61 (109)
169 7ZC6_C RnfC; Rnf, flavin, iron 32.3 1E+02 0.0012 27.3 3.4 33 24-57 67-103 (435)
170 8H3V_B DNA-directed RNA polyme 31.0 1.9E+02 0.0022 31.2 5.5 70 15-85 335-427 (1350)
171 7B9K_T Dihydrolipoyllysine-res 30.9 1.1E+02 0.0013 28.0 3.5 29 28-86 249-279 (630)
172 5CSA_A Acetyl-CoA carboxylase; 30.8 99 0.0011 30.5 3.3 34 25-88 131-166 (932)
173 2AUJ_D DNA-directed RNA polyme 30.7 2.6E+02 0.003 24.1 5.4 44 28-84 230-277 (309)
174 6G2I_B Acetyl-CoA carboxylase 30.4 1.1E+02 0.0012 34.6 3.7 35 24-88 749-785 (2346)
175 8A22_Au bL27m; mitoribosome, r 30.2 80 0.00092 25.6 2.2 28 10-37 28-56 (142)
176 2K33_A AcrA; glycoprotein, N-g 28.9 2.3E+02 0.0027 19.0 4.0 34 27-90 68-104 (116)
177 2K33_A AcrA; glycoprotein, N-g 28.2 1E+02 0.0012 20.6 2.2 15 71-85 17-32 (116)
178 5MMI_X plastid ribosomal prote 28.0 94 0.0011 26.7 2.3 28 10-37 95-123 (194)
179 8SGY_V propionyl-CoA carboxyla 27.9 1.8E+02 0.002 26.7 4.1 36 23-88 585-622 (657)
180 2XHA_B TRANSCRIPTION ANTITERMI 27.5 4.7E+02 0.0055 20.6 7.2 69 28-102 102-177 (193)
181 2DN8_A acetyl-CoA carboxylase 27.1 2E+02 0.0023 17.8 3.2 43 43-85 1-48 (100)
182 2AUK_A DNA-directed RNA polyme 26.9 89 0.001 23.7 1.9 15 71-85 66-81 (190)
183 4HR7_D Biotin carboxyl carrier 26.9 3.8E+02 0.0043 19.9 5.1 63 23-85 97-175 (176)
184 PF05896.15 ; NQRA ; Na(+)-tran 26.6 1.4E+02 0.0017 24.2 3.1 31 24-54 64-94 (258)
185 6L06_G Phosphatidylserine deca 26.3 67 0.00077 18.0 0.9 17 68-84 15-32 (36)
186 8SYI_Z DNA-directed RNA polyme 26.0 3.2E+02 0.0036 29.6 6.0 57 28-85 444-513 (1318)
187 8SYI_Z DNA-directed RNA polyme 25.7 1.6E+02 0.0018 31.7 3.8 48 29-85 932-981 (1318)
188 7CNW_B Phosphatidylserine deca 25.7 40 0.00046 21.1 -0.1 17 69-85 16-33 (42)
189 8F3D_H 3-methylcrotonyl-CoA ca 25.6 2.2E+02 0.0026 26.2 4.3 36 23-88 613-650 (687)
190 6NU2_W 39S ribosomal protein L 25.1 1.4E+02 0.0016 22.5 2.6 29 10-38 36-65 (115)
191 6HIX_A0 bl27m; mitoribosome, t 24.9 1.4E+02 0.0016 25.6 2.7 34 5-38 52-88 (185)
192 8GZH_Z DNA-directed RNA polyme 24.6 2.9E+02 0.0033 29.2 5.3 70 15-85 339-428 (1323)
193 5GUA_A 149aa long hypothetical 24.6 1.5E+02 0.0017 16.5 2.2 14 72-85 20-33 (71)
194 3BG3_C Pyruvate carboxylase, m 22.5 1.7E+02 0.0019 28.7 3.1 29 27-85 687-717 (718)
195 8H3V_B DNA-directed RNA polyme 22.3 1.9E+02 0.0022 31.2 3.7 53 29-85 932-997 (1350)
196 8I23_C DNA-directed RNA polyme 22.3 4.1E+02 0.0048 28.1 5.9 53 26-84 693-758 (1250)
197 7QH7_W 39S ribosomal protein L 22.2 1.5E+02 0.0017 21.7 2.2 29 10-38 21-50 (100)
198 7CNW_A Phosphatidylserine deca 21.9 1.1E+02 0.0013 25.7 1.6 12 29-40 85-96 (253)
199 5G51_A DWV-VP3-P-DOMAIN; VIRAL 21.9 72 0.00083 25.5 0.6 24 42-66 10-34 (157)
200 8GZH_Z DNA-directed RNA polyme 21.8 3.5E+02 0.004 28.7 5.3 57 24-83 1001-1061(1323)
201 2QF7_B Pyruvate carboxylase pr 21.8 1.7E+02 0.0019 30.7 3.2 28 28-85 1097-1126(1165)
202 8H3V_B DNA-directed RNA polyme 21.8 3.9E+02 0.0045 29.1 5.7 55 24-82 1023-1083(1350)
203 1C5E_C HEAD DECORATION PROTEIN 21.5 1.2E+02 0.0014 21.5 1.7 18 68-85 8-26 (95)
204 8GZH_Z DNA-directed RNA polyme 21.5 5E+02 0.0058 27.6 6.3 57 28-85 443-512 (1323)
205 5N9J_Y Mediator of RNA polymer 21.0 4E+02 0.0046 21.8 4.6 59 4-65 27-115 (193)
206 2AUJ_D DNA-directed RNA polyme 20.5 1.5E+02 0.0018 25.4 2.3 25 59-84 20-47 (309)
207 6Z1P_AA 50S ribosomal protein 20.4 1.5E+02 0.0017 26.5 2.1 28 10-37 68-96 (237)
No 1
>8TZL_E Peptidase M23; membrane protein, enzyme, TRANSPORT PROTEIN; HET: ADP;{Vibrio cholerae}
Probab=99.59 E-value=2.2e-14 Score=112.57 Aligned_cols=99 Identities=23% Similarity=0.266 Sum_probs=82.4 Template_Neff=11.700
Q ss_pred CCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCee
Q FD01845354_014 5 QFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQII 82 (133)
Q Consensus 5 ~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~I 82 (133)
.||....++-.|.|+|++.+.|++|+|+.+|+|+.. ..+....+.|.|+|+. +...|+.+.. ..+ .|+.|.+||+|
T Consensus 272 ~~g~~~~~~~~~~g~~~~~~~g~~v~a~~~G~v~~~-~~~~~~g~~v~i~~~~~~~~~y~~~~~-~~~~~g~~v~~g~~i 349 (382)
T 8TZL_E 272 NFGERQTGQIDWKGLVIDANYGQEVKAVYPGTIVFA-EYLRGYGLVVLLDHGKGDMTLYGFNQT-LLKKEGDKVTTGETI 349 (382)
T ss_dssp CTTCEEETTEECSSEEEECCTTCEEECSSCEEEEEC-SEETTTEEEEEEECSTTEEEEEEEEEE-ECSCTTCEECTTCEE
T ss_pred ccccccCCceeeccEEEECCCCCceecccCeEEEEE-EecCCccEEEEEEcCCCeEEEEeeecc-eecCCCCEEcCCCee
Confidence 466554444678999999999999999999999987 5555556789999998 9999999885 446 89999999999
Q ss_pred EEEEEcCC-CCcEEEEEEecCCCC
Q FD01845354_014 83 AKVGRLNS-GSSMLHLEIYTNGAS 105 (133)
Q Consensus 83 g~vG~l~~-~~~MLHfE~Y~g~~~ 105 (133)
+.+|.-.. .+..||||+..+...
T Consensus 350 g~~g~~~~~~~~~l~~e~~~~~~~ 373 (382)
T 8TZL_E 350 ALAGDTGGQSRPALYFEIRRNSRA 373 (382)
T ss_dssp EEEBCTTTCSSCEEEEEEEETTEE
T ss_pred EEccCCCCCCCCeeeEEEEeCCEE
Confidence 99998644 678999999987643
No 2
>6JMY_A Peptidase M23; Peptidoglycan, HYDROLASE; HET: CIT; 1.661A {Campylobacter jejuni}
Probab=99.33 E-value=3.2e-11 Score=93.21 Aligned_cols=97 Identities=30% Similarity=0.514 Sum_probs=83.2 Template_Neff=10.600
Q ss_pred ccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEEEEcCC-CC
Q FD01845354_014 16 HAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKVGRLNS-GS 92 (133)
Q Consensus 16 HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~l~~-~~ 92 (133)
+.|+++....++++.++.+|.|... ......|.+++++|+. ++..|.++.. +.+ .|+.|.+|+.|+.++..+. .+
T Consensus 149 ~~G~d~~~~~g~~v~a~~~G~v~~~-~~~~~~G~~i~i~~~~g~~~~y~~l~~-~~v~~g~~v~~G~~ig~~g~~g~~~g 226 (262)
T 6JMY_A 149 HSGTDFRAATGTPIYAANSGVVKIA-KDRYFAGNSVVIDHGFGIYSQYYHLSK-IDVKVGQKIKKGELIGLSGASGRVSG 226 (262)
T ss_dssp CCSEEECCCTTCEEECSSCEEEEEE-EEETTTEEEEEEECSTTCEEEEEEESE-ECCCTTCEECTTCEEEECBCCSSCSS
T ss_pred ccccceecccCCcEEecCCcEEEEE-eecCCCCeEEEEEeCCCEEEEEEecCC-CCCCCCCEECCCCEEEEccCCCCCCC
Confidence 6789999888999999999999887 6666678899999998 9999999988 778 9999999999999887765 67
Q ss_pred cEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhc
Q FD01845354_014 93 SMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNV 131 (133)
Q Consensus 93 ~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~ 131 (133)
+|+||+++.++.. .||..+|..
T Consensus 227 ~~lh~~~~~~g~~-----------------vdp~~~l~~ 248 (262)
T 6JMY_A 227 PHLHFGILAGGKQ-----------------VDPLDFVSK 248 (262)
T ss_dssp SBEEEEEEETTEE-----------------ECHHHHHHH
T ss_pred CEEEEEEEECCEE-----------------eCHHHHHHH
Confidence 8999999877655 677777754
No 3
>2HSI_B Putative peptidase M23; PEPTIDASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics, NYSGXRC; 1.9A {Pseudomonas aeruginosa PAO1}
Probab=99.27 E-value=1.4e-10 Score=91.27 Aligned_cols=97 Identities=27% Similarity=0.489 Sum_probs=64.5 Template_Neff=10.300
Q ss_pred cceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEEEEcCC-CCc
Q FD01845354_014 17 AGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKVGRLNS-GSS 93 (133)
Q Consensus 17 Ag~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~l~~-~~~ 93 (133)
.+.++....+..+.....+.+... ......+.++.+.+.. ....+.+... ... .+..+..++.++..+..+. .+.
T Consensus 181 ~Gid~~~~~g~~v~a~~~G~v~~~-~~~~~~G~~v~i~~~~g~~~~y~~l~~-~~v~~G~~v~~G~~ig~~g~~g~~~g~ 258 (282)
T 2HSI_B 181 SGLDFAVPAGTPIKAPAAGKVILI-GDYFFNGKTVFVDHGQGFISMFCHLSK-IDVKLGQQVPRGGVLGKVGATGRATGP 258 (282)
T ss_dssp CSEEECCCTTCEEECSSCEEEEEE-EEETTTEEEEEEEEETTEEEEEEEESE-ECSCTTCEECTTCEEEECCCTTTCSSC
T ss_pred ccccccCCCCCEEECCCCCEEEEE-EecCCCcEEEEEECCCeEEEEEEeecC-cCCCCCCEEcCCCEEEEeecCCCCCCC
Confidence 445555555556666666665544 3333445566665555 5555666555 556 7788899999998877776 778
Q ss_pred EEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 94 MLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 94 MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
++++.+...+.. ++|..+++.+
T Consensus 259 ~l~~~~~~~g~~-----------------~~P~~~l~~~ 280 (282)
T 2HSI_B 259 HMHWNVSLNDAR-----------------VDPAIFIGAF 280 (282)
T ss_dssp CEEEEEEETTEE-----------------ECHHHHHTCC
T ss_pred eEEEEEEECCEE-----------------eChHHHhccC
Confidence 999988776666 7888887654
No 4
>4RNZ_A Conserved hypothetical secreted protein; M23B metallopeptidase, metallopeptidase, peptidoglycan, Hydrolase; HET: GOL, PO4; 1.98A {Helicobacter pylori}
Probab=99.25 E-value=1.7e-10 Score=93.85 Aligned_cols=113 Identities=30% Similarity=0.348 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCCCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecC
Q FD01845354_014 2 GGRQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKK 78 (133)
Q Consensus 2 ~~r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~ 78 (133)
+...++.....++.|.|+|+..+.+++|+|+.+|+|+.. .........+.+ |+. +...|+.+.. ...+ .|+.|++
T Consensus 205 ~~~~~~~~~~~~~~~~G~d~~~~~g~~v~a~~~G~v~~~-~~~~~~G~~v~i-~~~g~~~~y~hl~~~~~~v~~g~~v~~ 282 (371)
T 4RNZ_A 205 SYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFM-GVKAGYGKVVEI-HLNELRLVYAHMSAFANGLKKGSFVKK 282 (371)
T ss_dssp BCCCCC------CCBSSEEEECCTTCEEECSSCEEEEEE-EEETTTEEEEEE-EETTEEEEEEEEEEECTTCCTTCEECT
T ss_pred cccccCcccceecCcccceEecCCCCEEEeCCCCEEEEe-eecCCCeeEEEE-EcCCEEEEEEEcccccCCCCCCCEEeC
Q ss_pred CCeeEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhccC
Q FD01845354_014 79 GQIIAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVWK 133 (133)
Q Consensus 79 GQ~Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~~ 133 (133)
||+|+.+|.... ...+||||++.+... .||..+|....
T Consensus 283 G~~ig~~g~~g~~~g~hlh~~~~~~~~~-----------------~~p~~~~~~~~ 321 (371)
T 4RNZ_A 283 GQIIGRVGSTGLSTGPHLHFGVYKNSRP-----------------INPLGYIRTAK 321 (371)
T ss_dssp TCEEEEECCCC----CEEEEEEEETTEE-----------------ECGGGGBCSSC
T ss_pred CCEEEEeccCCCCCCCEEEEEEEECCEE-----------------eCcHHHccccc
No 5
>6RK4_A Lysostaphin; Peptidoglycan Hydrolase, PEPTIDE BINDING PROTEIN; HET: K5T; 1.43A {Staphylococcus simulans}
Probab=99.20 E-value=1e-09 Score=89.39 Aligned_cols=113 Identities=27% Similarity=0.394 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCCCCCCCCCC--CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC--EEEEEEEecCCCCC-CCCee
Q FD01845354_014 2 GGRQFRAPRSGG--RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE--LILRYGEIANGSYT-GGSSV 76 (133)
Q Consensus 2 ~~r~FGa~R~gG--R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~--~i~RYGEi~~~~~v-~G~~V 76 (133)
....++.....+ +.|.|+|+....|++|+|+.+|+|+.....-+.+...+.|.+.. +..+|+.+. ...+ .|+.|
T Consensus 263 ~~~~~~~~~~~~~~~~~~g~d~~~~~g~~v~a~~~G~v~~~~~~~~~~g~~v~~~~~~~~~~~~y~~~~-~~~~~~g~~v 341 (493)
T 6RK4_A 263 KGYGYGPYPLGINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLS-KYNVKVGDYV 341 (493)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCccceEEEECCCCCEEEcCCCcEEEEEeeCCCCCceEEEEEECCCcEEEEEEEec-CCCCCCCCEE
Q ss_pred cCCCeeEEEEEcCC-CCcEEEEEEec----CCCCCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 77 KKGQIIAKVGRLNS-GSSMLHLEIYT----NGASSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 77 ~~GQ~Ig~vG~l~~-~~~MLHfE~Y~----g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
++||+|+.+|.... ...+||||++. .... .||..+|...
T Consensus 342 ~~g~~ig~~g~~g~~~~~~~h~~~~~~~~~~~~~-----------------~~p~~~~~~~ 385 (493)
T 6RK4_A 342 KAGQIIGWSGSTGYSTAPHLHFQRMVNSFSNSTA-----------------QDPMPFLKSA 385 (493)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCEEEEecCCCCCCCCeEEEEEEeCCCCCCCc-----------------CCchHHHhcc
No 6
>3TUF_B Stage II sporulation protein Q; Intercellular signalling, intercellular channel, sporulation, Cell engulfment and signalling, Intercellular Space, SIGNALING PROTEIN; 2.26A {Bacillus subtilis}
Probab=99.17 E-value=7.2e-10 Score=84.75 Aligned_cols=110 Identities=23% Similarity=0.330 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCCCCC-------------CCC-CcccceeccCCCCCe--EEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEec
Q FD01845354_014 4 RQFRAPR-------------SGG-RKHAGCDLKFPPGTP--IYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIA 66 (133)
Q Consensus 4 r~FGa~R-------------~gG-R~HAg~DLy~~~gt~--V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~ 66 (133)
..||..+ .++ +.|.|+|+..+.+++ |+|+.+|+|... .........+.|.|+. +...|+.+.
T Consensus 55 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~v~a~~~G~v~~~-~~~~~~G~~v~i~~~~g~~~~y~~~~ 133 (245)
T 3TUF_B 55 KKFYETDAAKEEKEAALVTYNNTYSLSKGIDLAEKDGKDFDVSASLSGTVVKA-EKDPVLGYVVEVEHADGLSTVYQSLS 133 (245)
T ss_dssp ECCCCTTSCHHHHHHTEEECSSEEEECCSEEEEETTCCCCEEECSSCEEEEEE-EEETTTEEEEEEECSTTEEEEEEEES
T ss_pred eecccCchhhhhHhcceEEecCccceeccEEEEcCCCCcceEEcCCCcEEEEE-EeCCCCceEEEEEeCCCeEEEEEEcc
Q ss_pred CCCCC-CCCeecCCCeeEEEEEcCC-C--CcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 67 NGSYT-GGSSVKKGQIIAKVGRLNS-G--SSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 67 ~~~~v-~G~~V~~GQ~Ig~vG~l~~-~--~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
...+ .|+.|++|+.|+.+|.... . ..+|||+++.+... +||..+|...
T Consensus 134 -~~~~~~G~~v~~G~~ig~~g~~g~~~~~g~hlh~~~~~~~~~-----------------~~p~~~~~~~ 185 (245)
T 3TUF_B 134 -EVSVEQGDKVKQNQVIGKSGKNLYSEDSGNHVHFEIRKDGVA-----------------MNPLNFMDKP 185 (245)
T ss_dssp -EESCCTTCEECTTCEEEECBCCSTTGGGCSBEEEEEEETTEE-----------------ECGGGTBTSB
T ss_pred -eeccCCCCEEeCCCEEEEEecCCCCCCCCCEEEEEEEECCEE-----------------cChHHhcCCC
No 7
>4LXC_D Lysostaphin; PEPTIDASE FAMILY M23, PEPTIDOGLYCAN HYDROLASE, METALLOPEPTIDASE, PEPTIDOGLYCAN, HYDROLASE; HET: SO4; 3.5A {Staphylococcus simulans}
Probab=99.08 E-value=7.9e-09 Score=77.17 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCCCCC-CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC--EEEEEEEecCCCCC-CCCeecCCCeeE
Q FD01845354_014 8 APRSGG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE--LILRYGEIANGSYT-GGSSVKKGQIIA 83 (133)
Q Consensus 8 a~R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~--~i~RYGEi~~~~~v-~G~~V~~GQ~Ig 83 (133)
.....+ +.|.|+|+..+.+++|+|+.+|+|+............+.+.+.. +...|+.+. ...+ .|+.|.+||.|+
T Consensus 24 ~~~~~~~~~~~g~d~~~~~g~~v~a~~~G~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~v~~g~~ig 102 (255)
T 4LXC_D 24 YPLGINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLS-KYNVKVGDYVKAGQIIG 102 (255)
T ss_dssp CSSCSSTTEECSEEEECCTTCEEECSSCEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEEE-EESCCTTCEECTTCEEE
T ss_pred CCCCCCCCceeeEEEECCCCCEEEcCCCCEEEEEEeCCCCCceEEEEEECCCcEEEEEEEec-CCCCCCCCEECCCCEEE
Q ss_pred EEEEcCC-CCcEEEEEEec----CCCCCccccCCCCCCCCHHHcCCcHHHHhc
Q FD01845354_014 84 KVGRLNS-GSSMLHLEIYT----NGASSASLTTRVGELRRRSDVTDPAPYLNV 131 (133)
Q Consensus 84 ~vG~l~~-~~~MLHfE~Y~----g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~ 131 (133)
.+|.... ...+||||++. .... .||..+|+.
T Consensus 103 ~~g~~g~~~~~~lh~~~~~~~~~~~~~-----------------~~p~~~~~~ 138 (255)
T 4LXC_D 103 WSGSTGYSTAPHLHFQRMVNSFSNSTA-----------------QDPMPFLKS 138 (255)
T ss_dssp EEBCCSSCSSSEEEEEEEESSSSSTTE-----------------ECCHHHHHH
T ss_pred EecCCCCCCCCeEEEEEEeCCCCCCcc-----------------CCchHHHhh
No 8
>3NYY_A Putative glycyl-glycine endopeptidase lytM; STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE; HET: 2PE, SO4, MSE; 1.6A {Ruminococcus gnavus}
Probab=99.07 E-value=4.6e-09 Score=80.93 Aligned_cols=107 Identities=27% Similarity=0.441 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCCCCCCC--CcccceeccCCCCC----eEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCe
Q FD01845354_014 5 QFRAPRSGG--RKHAGCDLKFPPGT----PIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSS 75 (133)
Q Consensus 5 ~FGa~R~gG--R~HAg~DLy~~~gt----~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~ 75 (133)
.|+..+..| +.|.|+|+..+.++ +|+|+.+|+|... ..-..+.+.+.|.|+. +...|+.+.. . .+ .|+.
T Consensus 112 ~~~~~~~~g~~~~~~g~d~~~~~~~~~~~~v~a~~~G~v~~~-~~~~~~G~~v~i~~~~g~~~~y~h~~~~~-~v~~g~~ 189 (252)
T 3NYY_A 112 SWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEK-GWLEKGGWRIGITAPTGAYFYYAHLDSYA-ELEKGDP 189 (252)
T ss_dssp CHHHHHTTCSCTTCCCEEEEESSCCTTCSEEECSSCEEEEEE-EEETTTEEEEEEECTTSCEEEEEEESEEC-SCCTTCE
T ss_pred CCceecCCCCCCceeeEEEECCCCCCCCcceecCCeEEEEEe-eeCCCCeEEEEEECCCCeEEEEEEecCCC-CCCCCCE
Q ss_pred ecCCCeeEEEEEcCCCCc--------EEEEEEecC----CCCCccccCCCCCCCCHHHcCCcHHHHh
Q FD01845354_014 76 VKKGQIIAKVGRLNSGSS--------MLHLEIYTN----GASSASLTTRVGELRRRSDVTDPAPYLN 130 (133)
Q Consensus 76 V~~GQ~Ig~vG~l~~~~~--------MLHfE~Y~g----~~~~g~Lt~~~~~y~RR~DL~DPt~~L~ 130 (133)
|++|+.|+.+|....... +|||+++.+ ... .||..+|+
T Consensus 190 v~~G~~ig~~g~~g~~~~~~~g~~~~hlh~~~~~~~~~~~~~-----------------~~p~~~l~ 239 (252)
T 3NYY_A 190 VKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEIS-----------------VNPYPVLR 239 (252)
T ss_dssp ECTTCEEEECBCCCSSSTTCCCSSCCEEEEEEEEEETTEEEE-----------------ECCHHHHH
T ss_pred ECCCCEEEEccCCCCCCCCCCCCCCcEEEEEEEecCCCCcEE-----------------ECCHHHHH
No 9
>1QWY_A peptidoglycan hydrolase; LytM lysostaphin metalloprotease asparagine switch, HYDROLASE; 1.3A {Staphylococcus aureus subsp. aureus NCTC 8325} SCOP: b.84.3.2
Probab=98.82 E-value=1.5e-07 Score=78.67 Aligned_cols=111 Identities=26% Similarity=0.468 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC--EEEEEEEecCCCCC-CCCeecCC
Q FD01845354_014 3 GRQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE--LILRYGEIANGSYT-GGSSVKKG 79 (133)
Q Consensus 3 ~r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~--~i~RYGEi~~~~~v-~G~~V~~G 79 (133)
...|+..+. ++.|.|+|+..+.+++|+|+.+|+|+......+..-..|.+.|.. +...|+.+. ...+ .|+.|++|
T Consensus 173 ~~~~g~~~~-~~~h~GvDi~~~~gt~V~a~~~G~V~~~g~~~~g~G~~V~i~~~~g~~~~~y~h~~-s~~v~~G~~V~~G 250 (291)
T 1QWY_A 173 LQPYGQYHG-GGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNN-RLTVSAGDKVKAG 250 (291)
T ss_dssp EECSEECTT-SSEECSEEEECCTTCEEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEES-EECCCTTCEECTT
T ss_pred eecccccCC-CCceeeEEEECCCCCcEEeCCCCeEEEeeccCCCCceEEEEEeCCCCeEEEEEecC-ccccCCCCEEcCC
Q ss_pred CeeEEEEEcCC-CCcEEEEEEecCCC----CCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 80 QIIAKVGRLNS-GSSMLHLEIYTNGA----SSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 80 Q~Ig~vG~l~~-~~~MLHfE~Y~g~~----~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
+.|+.+|.... ...+|||++..+.. . .||..+|...
T Consensus 251 ~~IG~~G~tG~~tg~hLhf~v~~~g~~~~~~-----------------vdP~~yl~~~ 291 (291)
T 1QWY_A 251 DQIAYSGSTGNSTAPHVHFQRMSGGIGNQYA-----------------VDPTSYLQSR 291 (291)
T ss_dssp CEEEECCCCSSCSSSEEEEEEEESEESGGGE-----------------ECCHHHHC--
T ss_pred CEEEEeccCCCCCCCeEEEEEEeCCccccee-----------------eChhHHcccC
No 10
>6TPI_A Murein hydrolase activator EnvC; Complex, PROTEIN BINDING; 2.1A {Escherichia coli (strain K12)}
Probab=98.75 E-value=3.6e-07 Score=70.81 Aligned_cols=110 Identities=27% Similarity=0.371 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred CCCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCC
Q FD01845354_014 3 GRQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQ 80 (133)
Q Consensus 3 ~r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ 80 (133)
...|+.....+..|.|+|++...+.+++++.+|.|+.. ..++.+...+.|.|+. +...|+.+.... + .|..|..|.
T Consensus 274 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~v~~~-~~~~~~g~~v~~~~~~g~~~~~~~~~~~~-~~~g~~~~~G~ 351 (386)
T 6TPI_A 274 LHRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILA-DWLQGYGLVVVVEHGKGDMSLYGYNQSAL-VSVGSQVRAGQ 351 (386)
T ss_dssp EECTTSEEETTEECSSEEEECCTTCEEECSSSEEEEEE-EEETTTEEEEEEEEETTEEEEEEEESEEC-SCTTCEECTTC
T ss_pred ccccCcccCCccceeeEEEeCCCCCEEEccCCeEEEEE-ecCCCceEEEEEEcCCeeEEEEEcCCCcc-CCCCCEEcCCC
Q ss_pred eeEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhc
Q FD01845354_014 81 IIAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNV 131 (133)
Q Consensus 81 ~Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~ 131 (133)
+|+.+|.... ....+||+++.+... .||..+++.
T Consensus 352 ~~~~~g~~g~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 386 (386)
T 6TPI_A 352 PIALVGSSGGQGRPSLYFEIRRQGQA-----------------VNPQPWLGR 386 (386)
T ss_dssp EEEECBCTTTCSSCEEEEEEEETTEE-----------------ECCGGGBCC
T ss_pred eEEEeecCCCCCCCeEEEEEEECCEE-----------------eCCHHHcCC
No 11
>6UE4_B ShyA endopeptidase; Endopeptidase M23, LytM, HYDROLASE; 2.08A {Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)}
Probab=98.61 E-value=1.5e-06 Score=70.94 Aligned_cols=112 Identities=26% Similarity=0.394 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCCCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCC
Q FD01845354_014 2 GGRQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKG 79 (133)
Q Consensus 2 ~~r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~G 79 (133)
+...+...-.....|.|.|+....+++++|+.+|+|... ..-......+.|.|+. +...|+.+. ...+ .|+.|+.|
T Consensus 252 ~~~~~~~~~~~~~~~~g~d~~~~~~~~v~a~~~G~v~~~-~~~~~~g~~v~i~~~~g~~~~y~~~~-~~~v~~g~~v~~G 329 (399)
T 6UE4_B 252 DPRRLHPVTKRVAPHNGTDFAMPIGTPVYTSGDGVVVMT-RNHPYAGNYVVIQHGNTYMTRYLHLS-KILVKKGQKVSRG 329 (399)
T ss_dssp EEEEEETTTTEEEEECSEEEECCTTCEEECSSSEEEEEE-EEETTTEEEEEEEETTTEEEEEEEES-EECCCTTCEECTT
T ss_pred CCCccCCCcCCccccCCEEEeCCCCCcEEeCCCcEEEEE-ecCCCCceEEEEEeCCcEEEEEEEcC-CccCCCCCEECCC
Q ss_pred CeeEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 80 QIIAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 80 Q~Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
|.|+.+|.... ....||||+..++.. +||..+....
T Consensus 330 ~~ig~~g~~g~~~~~~l~~~~~~~~~~-----------------~~p~~~~~~~ 366 (399)
T 6UE4_B 330 QRIGLSGNTGRVTGPHLHYELIVRGRP-----------------VNAMKANIPM 366 (399)
T ss_dssp CEEEECBCCSSCSSSEEEEEEEETTEE-----------------ECTTTSCCCC
T ss_pred CEEEEecCCCCCCCCEEEEEEEECCEE-----------------CCchhccCCc
No 12
>5J1L_A ToxR-activated gene (TagE); M23B family metallopeptidase, Heterodimer, HYDROLASE; 2.27A {Helicobacter pylori}
Probab=98.57 E-value=2.9e-06 Score=63.99 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCCCCCCCC---C-CcccceeccCCCCCeEEEecCeEEEECCCcccCCcc--EEEEEeCC-EEEEEEEecCCCCC-CCC
Q FD01845354_014 3 GRQFRAPRSG---G-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTS--AVEIRHGE-LILRYGEIANGSYT-GGS 74 (133)
Q Consensus 3 ~r~FGa~R~g---G-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~--ai~I~H~~-~i~RYGEi~~~~~v-~G~ 74 (133)
...|+..+.. . +.|.|+|+..+.+++++|+.+|+|... ..-+...+ .+.+.|+. +...|+.+. ...+ .|+
T Consensus 48 ~~~~g~~~~~~~~~~~~~~g~d~~~~~g~~v~a~~~G~v~~~-~~~~~~~~g~~~~~~~~~~~~~~y~~~~-~~~~~~g~ 125 (216)
T 5J1L_A 48 SAAFNKRIHPILHVLHNHTGLDLSTAINTPVYASASGVVGLA-SKGWNGGYGNLIKVFHPFGFKTYYAHLN-KIVVKTGE 125 (216)
T ss_dssp HC-----------CEECSSSEEEECCTTCEEECSSCEEEEEE-ECSCGGGTCEEEEEECGGGEEEEEEEES-EECCCTTC
T ss_pred ecccCCccccccCcccccceEEEeCCCCCeeEcCCCeEEEEE-eCCCCCCceEEEEEEcCCCeEEEEEeCC-cccCCCCC
Q ss_pred eecCCCeeEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHh
Q FD01845354_014 75 SVKKGQIIAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLN 130 (133)
Q Consensus 75 ~V~~GQ~Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~ 130 (133)
.|++|+.|+.+|.... ...+|||++...... .||..++.
T Consensus 126 ~v~~G~~ig~~g~~g~~~~~~l~~~~~~~~~~-----------------~~p~~~~~ 165 (216)
T 5J1L_A 126 FVKKGQLIGYSGNTGMSTGPHLHYEVRFLDQP-----------------INPMSFTK 165 (216)
T ss_dssp EECTTCEEEECCCCSSCSSSEEEEEEEETTEE-----------------ECTHHHHS
T ss_pred EEcCCCEEEEccCCCCCCCCEEEEEEEECCee-----------------eChhHhhc
No 13
>8I6O_E Membrane-bound metallopeptidase; Type VII ABC transporter, divisome, PG hydrolysis, MEMBRANE PROTEIN;{Pseudomonas aeruginosa}
Probab=98.55 E-value=3.4e-06 Score=67.71 Aligned_cols=108 Identities=25% Similarity=0.344 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCCCCCCC--CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCe
Q FD01845354_014 6 FRAPRSGG--RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQI 81 (133)
Q Consensus 6 FGa~R~gG--R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~ 81 (133)
|+.....+ +.|.|+|+..+.++++.++.+|.|+.. ......-..+.+.|+. +...|+.+.... + .|+.|..|+.
T Consensus 296 ~~~~~~~~~~~~~~g~d~~~~~g~~~~~~~~g~v~~~-~~~~~~g~~v~~~~~~~~~~~~~~~~~~~-v~~g~~~~~g~~ 373 (409)
T 8I6O_E 296 FGSQRGDDPRAKWDGVLISASAGSTVRAVHGGRVVFA-DWLRGAGLLVILDHGGGYLSLYGHNQSLL-KDAGDTVKAGDP 373 (409)
T ss_pred ccCCCCCCCCcccceEeeeCCCCCeEEeccCcEEEEE-EecCCceeEEEEEeCCcEEEEEEecCCCC-CCCCCEECCCCe
Q ss_pred eEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 82 IAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 82 Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
|+..|.... ....+||++|.+... .+|.++++.+
T Consensus 374 i~~~g~~g~~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~ 408 (409)
T 8I6O_E 374 IATVGTSGGQSSPAVYFAIRHQGRP-----------------ADPTTWCRAQ 408 (409)
T ss_pred EEEecCCCCCCCcEEEEEEEECCEE-----------------eChHHHHHhc
No 14
>4BH5_D MUREIN HYDROLASE ACTIVATOR ENVC; CELL CYCLE, AMIDASE ACTIVATOR, AUTOLYSIN, CYTOKINESIS, MORPHOGENESIS, SACCULUS, PEPTIDOGLYCAN; HET: IOD, GOL; 1.57A {ESCHERICHIA COLI}
Probab=98.49 E-value=1.4e-05 Score=50.28 Aligned_cols=109 Identities=28% Similarity=0.395 Sum_probs=0.0 Template_Neff=13.900
Q ss_pred CCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCe
Q FD01845354_014 4 RQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQI 81 (133)
Q Consensus 4 r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~ 81 (133)
..|+..+...+.|.++|+..+.++.+.++.+|.+... .........+.+.++. +...|+.+. ...+ .|+.+.+|+.
T Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~g~~ 108 (142)
T 4BH5_D 31 HRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILA-DWLQGYGLVVVVEHGKGDMSLYGYNQ-SALVSVGSQVRAGQP 108 (142)
T ss_dssp ECTTCEEETTEECSSEEEECCTTCEEECSSSEEEEEE-EECTTSCEEEEEEEETTEEEEEEEES-EESSCTTCEECTTCE
T ss_pred eccccccCCcceeceEEEecCCCCeEEeeeCcEEEEE-EecCCCCcEEEEEeCCcEEEEEEecC-ceeecCCCEECCCCc
Q ss_pred eEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhc
Q FD01845354_014 82 IAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNV 131 (133)
Q Consensus 82 Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~ 131 (133)
|+.++.... ...++|+++...... .+|..+++.
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 142 (142)
T 4BH5_D 109 IALVGSSGGQGRPSLYFEIRRQGQA-----------------VNPQPWLGR 142 (142)
T ss_dssp EEECCCTTSCSSCEEEEEEEETTEE-----------------ECCGGGBCC
T ss_pred EEEeecCCCCCCceEEEEEEECCEE-----------------eCCHHHcCC
No 15
>2GU1_A Zinc peptidase; Zinc Peptidase, alpha/beta, beta barrel, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research Center; 1.9A {Vibrio cholerae}
Probab=98.49 E-value=3e-06 Score=67.54 Aligned_cols=119 Identities=23% Similarity=0.352 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CCCCCC-CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEE
Q FD01845354_014 8 APRSGG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 8 a~R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~ 84 (133)
....++ +.|.|+|+..+.+++|.++.+|.|+.. ..-......+.|.|+. +...|+.+. ...+ .|+.|.+||.|+.
T Consensus 223 ~~~~~~~~~~~g~~~~~~~~~~v~~~~~G~v~~~-~~~~~~g~~v~i~~~~g~~~~~~~~~-~~~v~~g~~v~~g~~ig~ 300 (361)
T 2GU1_A 223 HPVTGRVVPHNGTDFATPIGAPVYSTGDGKVIVV-RKHPYAGNYLVIEHNSVYKTRYLHLD-KILVKKGQLVKRGQKIAL 300 (361)
T ss_dssp CTTTCCBCCBCSEEECCCTTCEEECSSSEEEEEE-EEETTTEEEEEEECSSSEEEEEEEES-EECCCTTCEECTTCEEEE
T ss_pred CCCCcceecCCCcceecCCCCeEEecCCcEEEEE-EecCCCCcEEEEEcCceeEEEEeecc-hhhccCCCEEeCCCEEEE
Q ss_pred EEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHH
Q FD01845354_014 85 VGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYL 129 (133)
Q Consensus 85 vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L 129 (133)
+|.... ....|||++...... .+......+..++-=..+++.+|
T Consensus 301 ~g~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 345 (361)
T 2GU1_A 301 AGATGRLTGPHLHFEVLVRNRP-VDAMKADLPIAKSLSSNQKTSFL 345 (361)
T ss_dssp CCCCSSCSSCCEEEEEEETTEE-ECTTCSSCC--------------
T ss_pred cccCCCCCCCEEEEEEEECCEE-cCchhcCCChhhcCChhHHHHHH
No 16
>6MUK_A Peptidase M23; Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, Peptidase M23, HYDROLASE; 1.93A {Neisseria gonorrhoeae}
Probab=98.47 E-value=3.3e-06 Score=70.12 Aligned_cols=101 Identities=32% Similarity=0.400 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCCCCCeecCCCeeEEEEEcCC-C
Q FD01845354_014 14 RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYTGGSSVKKGQIIAKVGRLNS-G 91 (133)
Q Consensus 14 R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v~G~~V~~GQ~Ig~vG~l~~-~ 91 (133)
+.|.|+|+..+.+++|.|+.+|+|+.. ..-+.....+.|+|+. +...|+.+.......|+ |++||+|+.+|.... .
T Consensus 264 ~~~~gid~~~~~g~~v~a~~~G~v~~~-~~~~~~G~~v~i~~~~g~~~~y~~~~~~~~~~~~-v~~G~~ig~~g~~g~~~ 341 (401)
T 6MUK_A 264 RLHTGIDYAAPQGTPVRASADGVITFK-GRKGGYGNAVMIRHANGVETLYAHLSAFSQAQGN-VRGGEVIGFVGSTGRST 341 (401)
T ss_dssp EEECSEEEECCTTCEEECSSSEEEEEE-EECGGGCEEEEEECSTTEEEEEEEESEECSCCSE-ECTTCEEEECBCCSSCS
T ss_pred eeeeeEEEeCCCCCcEEecCCCEEEEE-ccCCCceEEEEEEeCCcEEEEEEEccccccCCCe-EeCCCEEEEEecCCCCC
Q ss_pred CcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhccC
Q FD01845354_014 92 SSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVWK 133 (133)
Q Consensus 92 ~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~~ 133 (133)
..+||||+..+... .||..++....
T Consensus 342 g~~l~~~v~~~~~~-----------------~~p~~~~~~~~ 366 (401)
T 6MUK_A 342 GPHLHYEARINGQP-----------------VNPVSVALPTP 366 (401)
T ss_dssp SCEEEEEEEETTEE-----------------ECCTTTSSCCC
T ss_pred CCeEEEEEEECCEE-----------------eChHHhcCCCC
No 17
>6SMK_A Peptidase_M23 domain-containing protein; M23 family, prophage protein, peptidoglycan hydrolase, ANTIMICROBIAL PROTEIN, zinc metallopeptidase; 2.997A {Enterococcus faecalis (strain ATCC 700802 / V583)}
Probab=98.41 E-value=3.6e-05 Score=50.26 Aligned_cols=113 Identities=27% Similarity=0.325 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred CCCCCCCCCCC-CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCC
Q FD01845354_014 3 GRQFRAPRSGG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKG 79 (133)
Q Consensus 3 ~r~FGa~R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~G 79 (133)
...|+..+... ..+.++|+....++.+.++.+|+|......-......+.+.++. +...|..+.. ..+ .|+.+..|
T Consensus 15 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~g 93 (142)
T 6SMK_A 15 TSDYGKRPGLYGDFHTGIDYAAPTGTPIPAQYPGLVDWVQSSSIGLGEHVGIKVADNLWAMYGHMSR-IRAKMGDKVKAG 93 (142)
T ss_dssp EECSEECSSSSSCEECSEEEECCTTCEEECSSCEEEEEEEEESSTTCSEEEEEEETTEEEEEESEEE-ECCCTTCEECTT
T ss_pred cCCCCCCCCccCCcccceeeeCCCCCeeccccCeEEEEEeCCCCCCccEEEEEeCCCEEEEEEeccc-ccCCCCCEECCC
Q ss_pred CeeEEEEEcCC-CCcEEEEEEec---CCCCCccccCCCCCCCCHHHcCCcHHHHhccC
Q FD01845354_014 80 QIIAKVGRLNS-GSSMLHLEIYT---NGASSASLTTRVGELRRRSDVTDPAPYLNVWK 133 (133)
Q Consensus 80 Q~Ig~vG~l~~-~~~MLHfE~Y~---g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~~ 133 (133)
+.|+..+.... ....+|++++. .... .+|..+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 134 (142)
T 6SMK_A 94 QIVGDVGSSGWSTGPAVHYELRKGGPNGQH-----------------VNPDTYGGAAG 134 (142)
T ss_dssp CEEEEEBCTTTCSSSEEEEEEEESSTTSEE-----------------ECTTTTTC---
T ss_pred CEEEEecCCCCCCCCeEEEEEEEcCCCCcE-----------------eChhHhccCCC
No 18
>4QP5_B Lysostaphin; Peptidase family M23, Peptidoglycan amidase, Metallopeptidase, Peptidoglycan, Hydrolase, Extracellular; HET: PO4, GOL; 1.26A {Staphylococcus simulans bv. staphylolyticus}
Probab=98.34 E-value=7.3e-05 Score=47.53 Aligned_cols=101 Identities=28% Similarity=0.437 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC--EEEEEEEecCCCCC-CCCeecCCCeeEEEEEcCC
Q FD01845354_014 14 RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE--LILRYGEIANGSYT-GGSSVKKGQIIAKVGRLNS 90 (133)
Q Consensus 14 R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~--~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~l~~ 90 (133)
..|.++|+..+.++++.++.+|+|......-+.....+.+.... +...|+.+.... + .|+.|.+|+.|+.++....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~g~~~~~~~~~~~ 109 (140)
T 4QP5_B 31 GMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKYN-VKVGDYVKAGQIIGWSGSTGY 109 (140)
T ss_dssp GEECSEEEECCTTCEEECSBCEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEESEES-CCTTCEECTTCEEEECBCCSS
T ss_pred CccceEeeecCCCCeEEccCCCEEEEecccCCCCceeEEEEECCCCEEEEEEEeCCCC-CCCCCEECCCCEEEECcCCCC
Q ss_pred -CCcEEEEEEec----CCCCCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 91 -GSSMLHLEIYT----NGASSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 91 -~~~MLHfE~Y~----g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
....+|||++. .... .||..+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~~~~ 139 (140)
T 4QP5_B 110 STAPHLHFQRMVNSFSNSTA-----------------QDPMPFLKSA 139 (140)
T ss_dssp CSSCEEEEEEEESSSSSTTE-----------------ECCHHHHTC-
T ss_pred CCCceEEEEEEeCCCCCCCc-----------------cCchHHHhhc
No 19
>5J1K_A ToxR-activated gene (TagE); M23B family metallopeptidase, Homodimer, HYDROLASE; HET: GOL; 1.81A {Helicobacter pylori}
Probab=98.26 E-value=5.6e-05 Score=56.79 Aligned_cols=111 Identities=25% Similarity=0.307 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCCCCCCCCCCCC-CcccceeccCCCCCeEEEecCeEEEECCCcccCCcc--EEEEEeCC-EEEEEEEecCCCCC-CCCe
Q FD01845354_014 1 NGGRQFRAPRSGG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTS--AVEIRHGE-LILRYGEIANGSYT-GGSS 75 (133)
Q Consensus 1 ~~~r~FGa~R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~--ai~I~H~~-~i~RYGEi~~~~~v-~G~~ 75 (133)
.....+.....+. ..|.|+|+..+.+++++|+.+|+|... ...+...+ .+.+.++. +...|+.+. ...+ .|+.
T Consensus 49 ~~~g~~~~~~~~~~~~~~g~d~~~~~g~~v~~~~~g~v~~~-~~~~~~~~g~~v~i~~~~g~~~~~~~~~-~~~~~~g~~ 126 (216)
T 5J1K_A 49 KPTKERNHPIKKIKGVESGIDFIAPLNTPVYASADGIVDFV-KTNSNVGYGNLVRIEHAFGFSSIYTHLD-HVNVQPKSF 126 (216)
T ss_dssp EEGGGSCCTTTCSSCCCCCEEEECCTTCEEECSSSEEEEEE-ESSCCSTTCEEEEEECGGGEEEEEEEES-EECCCTTCE
T ss_pred cCCCCCCCCCCCCCcceeeEEEECCCCCeEECCCCcEEEEE-ECCCCCCceEEEEEEeCCCEEEEEEECc-cCCCCCCCe
Q ss_pred ecCCCeeEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHh
Q FD01845354_014 76 VKKGQIIAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLN 130 (133)
Q Consensus 76 V~~GQ~Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~ 130 (133)
|+.|+.|+.+|.... ....+|||++..... .+|..++.
T Consensus 127 v~~G~~ig~~g~~g~~~g~~~~~~~~~~~~~-----------------~~p~~~~~ 165 (216)
T 5J1K_A 127 IQKGQLIGYSGKSGNSGGEKLHYEVRFLGKI-----------------LDAQKFLA 165 (216)
T ss_dssp ECTTCEEEECBCCSSCSSSEEEEEEEETTEE-----------------CCHHHHHT
T ss_pred eCCCCeEEEecCCCCCCCceEEEEEEECCEE-----------------eChHHHhc
No 20
>5J1L_D ToxR-activated gene (TagE); M23B family metallopeptidase, Heterodimer, HYDROLASE; 2.27A {Helicobacter pylori}
Probab=98.04 E-value=0.00032 Score=49.31 Aligned_cols=107 Identities=26% Similarity=0.330 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred CCCCCCCCC-CcccceeccCCCCCeEEEecCeEEEECCCcccC--CccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCC
Q FD01845354_014 5 QFRAPRSGG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYS--GTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKG 79 (133)
Q Consensus 5 ~FGa~R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~--gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~G 79 (133)
.+.....+. ..|.|+|+....+.++.++.+|.+... ..-+. ....+.+.++. ....|+.+ ....+ .|+.+.+|
T Consensus 34 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~g 111 (189)
T 5J1L_D 34 ERNHPIKKIKGVESGIDFIAPLNTPVYASADGIVDFV-KTNSNVGYGNLVRIEHAFGFSSIYTHL-DHVNVQPKSFIQKG 111 (189)
T ss_dssp GSCCTTTCCTTCCCCEEEECCTTCEEECSSSEEEEEE-ECSCCSTTCEEEEEECGGGEEEEEEEE-SEECCCTTCEECTT
T ss_pred CCCCcCCccCcceeEEEEECCCCCcEECCCCeEEEEE-eCCCCCCcceEEEEEeCCCEEEEEEeC-CcCCCCCCCeecCC
Q ss_pred CeeEEEEEcCC-CCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHh
Q FD01845354_014 80 QIIAKVGRLNS-GSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLN 130 (133)
Q Consensus 80 Q~Ig~vG~l~~-~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~ 130 (133)
+.|+.+|.... ...++|||+...... .+|..++.
T Consensus 112 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 146 (189)
T 5J1L_D 112 QLIGYSGKSGNSGGEKLHYEVRFLGKI-----------------LDAQKFLA 146 (189)
T ss_dssp CEEEECBCTTTCSSSEEEEEEEETTEE-----------------CCHHHHHT
T ss_pred CEEEEcccCCCCCCceEEEEEEECCEE-----------------EChHHHhh
No 21
>4ZYB_D Glycyl-glycine endopeptidase LytM; LYTM, LYSOSTAPHIN, PEPTIDOGLYCAN AMIDASE, PEPTIDASE, HYDROLASE, TETRAGLYCINE PHOSPHINATE, TRANSITION STATE ANALOGUE, COMPLEX; HET: 4SQ, EPE; 1.5A {Staphylococcus aureus subsp. aureus NCTC 8325}
Probab=98.03 E-value=0.0011 Score=41.08 Aligned_cols=111 Identities=26% Similarity=0.490 Sum_probs=0.0 Template_Neff=14.000
Q ss_pred CCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC--EEEEEEEecCCCCCCCCeecCCCe
Q FD01845354_014 4 RQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE--LILRYGEIANGSYTGGSSVKKGQI 81 (133)
Q Consensus 4 r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~--~i~RYGEi~~~~~v~G~~V~~GQ~ 81 (133)
..|+..+.. ..|.++|+..+.++.+.++.+|.+......-...-..+.+.+.. +...|+.+.......|+.+..|+.
T Consensus 17 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 95 (134)
T 4ZYB_D 17 QPYGQYHGG-GAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQ 95 (134)
T ss_dssp ECSEECTTS-SEECSEEEECCTTCEEECSSSEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEESSBSCCTTCEECTTCE
T ss_pred ccccccCCC-ceEEeEEeeCCCCCCeecCCCcEEEEeCCCCCCCceEEEEEeCCCCeEEEEEEeCeeecCCCCEECCCCE
Q ss_pred eEEEEEcCC-CCcEEEEEEecCCC----CCccccCCCCCCCCHHHcCCcHHHHhcc
Q FD01845354_014 82 IAKVGRLNS-GSSMLHLEIYTNGA----SSASLTTRVGELRRRSDVTDPAPYLNVW 132 (133)
Q Consensus 82 Ig~vG~l~~-~~~MLHfE~Y~g~~----~~g~Lt~~~~~y~RR~DL~DPt~~L~~~ 132 (133)
|+.++.... ....+||+++.... . .+|..++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 134 (134)
T 4ZYB_D 96 IAYSGSTGNSTAPHVHFQRMSGGIGNQYA-----------------VDPTSYLQSR 134 (134)
T ss_dssp EEECCCCSSCSSSEEEEEEEESSSSGGGE-----------------ECCHHHHHTC
T ss_pred EEEecCCCCCCCCeEEEEEecCCCCCccc-----------------cChhHHhccC
No 22
>6YJ1_A ORF007; zinc metallopeptidase, bacteriophage, endolysin, M23 peptidase, VIRAL PROTEIN; 2.3A {Staphylococcus phage 2638A}
Probab=97.98 E-value=0.00036 Score=49.47 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecCCCeeEEEEEcC
Q FD01845354_014 13 GRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKKGQIIAKVGRLN 89 (133)
Q Consensus 13 GR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~vG~l~ 89 (133)
++.|.|+|+....++++.++.+|.+... ..-......+.+.++. ....|..+.. ...+ .|+.+.+|+.|+.++...
T Consensus 58 ~~~~~g~d~~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ig~~g~~g 136 (186)
T 6YJ1_A 58 GGYHRAFDVYSNETNDVPAVTSGTVIEA-NDYGNFGGTFVIRDANDNDWIYGHLQRGSMRFVVGDKVNQGDIIGLQGNSN 136 (186)
T ss_dssp TTBCCEEEEECSSCCEEECSSCEEEEEE-EEEETTEEEEEEECTTSCEEEEEEECTTCCCCCTTCEECTTCEEEEBBCCC
T ss_pred CCceecEEEECCCCCEEeCCCCEEEEEE-cCCCCcccEEEEEeCCCcEEEEEeccCCCcccCCCCEEcCCCEEEEccCCC
Q ss_pred C-CCc---EEEEEEecCCC
Q FD01845354_014 90 S-GSS---MLHLEIYTNGA 104 (133)
Q Consensus 90 ~-~~~---MLHfE~Y~g~~ 104 (133)
. ... ++|+++..+..
T Consensus 137 ~~~g~~~~~~~~~~~~~~~ 155 (186)
T 6YJ1_A 137 YYDNPMSVHLHLQLRPKDA 155 (186)
T ss_dssp TTCCCCCSBEEEEEECTTC
T ss_pred CCCCCCccEEEEEEEECCC
No 23
>5B0H_B Leukocyte cell-derived chemotaxin-2; CHEMOKINE, M23 METALLOPEPTIDASE FOLD, METAL BINDING PROTEIN; 1.94A {Homo sapiens}
Probab=97.96 E-value=0.00078 Score=42.73 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=0.0 Template_Neff=13.500
Q ss_pred CCCCCCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCc----cEEEEEeCCEEEEEEEecCCCCC-CCCee
Q FD01845354_014 2 GGRQFRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGT----SAVEIRHGELILRYGEIANGSYT-GGSSV 76 (133)
Q Consensus 2 ~~r~FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT----~ai~I~H~~~i~RYGEi~~~~~v-~G~~V 76 (133)
+...|+..+ .++.|.++|+..+.++.+.++.+|.+... ....... ..+.+.+..+...|..+.. + .|+.+
T Consensus 24 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~ 98 (135)
T 5B0H_B 24 GCGQYSAQR-SQRPHQGVDVLCSAGSTVYAPFTGMIVGQ-EKPYQNKNAINNGVRISGRGFCVKMFYIKP---IKYKGPI 98 (135)
T ss_dssp BCCSTTCCC-SSSCCCSEEEECCTTCEEECSSSEEEEEE-CCSCSSCCTTCCEEEEEETTEEEEEESEEE---SCSEEEE
T ss_pred CCCccCCCC-CCCCeeeEEEEcCCCCeEEcCcceEEEEe-ecCCCCCccccceEEEECCcEEEEEEEeee---cccCCee
Q ss_pred cCCCeeEEEEEcC----CCCcEEEEEE
Q FD01845354_014 77 KKGQIIAKVGRLN----SGSSMLHLEI 99 (133)
Q Consensus 77 ~~GQ~Ig~vG~l~----~~~~MLHfE~ 99 (133)
.+|+.|+..+... .....+|+++
T Consensus 99 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 125 (135)
T 5B0H_B 99 KKGEKLGTLLPLQKVYPGIQSHVHIEN 125 (135)
T ss_dssp CTTSEEEEECCHHHHSTTSCCEEEEEE
T ss_pred cCCCeeEEEecccccCCCCCceEEEEc
No 24
>7QRL_B DipM; LytM factor Autolysin activator, CELL CYCLE; 2.25A {Caulobacter vibrioides}
Probab=97.93 E-value=0.0011 Score=41.58 Aligned_cols=94 Identities=21% Similarity=0.420 Sum_probs=0.0 Template_Neff=14.000
Q ss_pred CCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEEEE
Q FD01845354_014 10 RSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKVGR 87 (133)
Q Consensus 10 R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~ 87 (133)
+..+..|.++|+....+..+.++.+|.+..........-..+.+.+.. +...|+.+. ...+ .|+.+..|+.++..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~ 109 (143)
T 7QRL_B 31 KGTGQRNDGLNIRAPQGTPVLSSADGEIAYAGNQVPTFGNLVLVKHADGWVTAYAHLS-STNVKMRQQVKQGEQLGTVGA 109 (143)
T ss_dssp CSSSCEESSEEEECCTTCEEECSSSEEEEEEESCSTTCCEEEEEECGGGEEEEEEEES-EECCCTTCEECTTCEEEECBC
T ss_pred CCCCcceeeEEEECCCCCcEEcCCCeEEEEEcCCCCCceEEEEEEcCCCEEEEEEecc-cCCCCCCCeEeCCCEEEEccc
Q ss_pred cCC-CCcEEEEEEecCCC
Q FD01845354_014 88 LNS-GSSMLHLEIYTNGA 104 (133)
Q Consensus 88 l~~-~~~MLHfE~Y~g~~ 104 (133)
... ...++|+++.....
T Consensus 110 ~~~~~~~~~~~~~~~~~~ 127 (143)
T 7QRL_B 110 TGGVNEPQLHFEMRYAPT 127 (143)
T ss_dssp CSSCSSCEEEEEEEECSS
T ss_pred CCCCCCCeEEEEEEeCCC
No 25
>5KQB_A Peptidase M23; lysostaphin, LytU, peptidoglycan, zinc, hydrolase; HET: ZN; NMR {Staphylococcus aureus}
Probab=97.82 E-value=0.003 Score=40.40 Aligned_cols=111 Identities=26% Similarity=0.379 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred CCCCCCCC--CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCCCCCeecCCCee
Q FD01845354_014 6 FRAPRSGG--RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYTGGSSVKKGQII 82 (133)
Q Consensus 6 FGa~R~gG--R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v~G~~V~~GQ~I 82 (133)
|+..+... ..|.++|+....+.++.++.+|.+.........+...+...... +...|..+.......|+.+.+|+.|
T Consensus 17 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 96 (145)
T 5KQB_A 17 FGKYQHSPFDGKHYGIDFALPKGTPIKAPTNGKVTRIFNNELGGKVLQIAEDNGEYHQWYLHLDKYNVKVGDRVKAGDII 96 (145)
T ss_dssp SEESSSSSSSCEECSEEEECCTTCEEECSSSEEEEEEEEETTTEEEEEEEETTSSEEEEEEEEEEESCCTTCEECTTCEE
T ss_pred CCcccCCCCCCCcceEEEeCCCCCEEECCCCeEEEEEEcCCCCceEEEEEeCCCcEEEEEecccccccCCCCEECCCCEE
Q ss_pred EEEEEcC-C-CCcEEEEEEecCCC----CCccccCCCCCCCCHHHcCCcHHHHhccC
Q FD01845354_014 83 AKVGRLN-S-GSSMLHLEIYTNGA----SSASLTTRVGELRRRSDVTDPAPYLNVWK 133 (133)
Q Consensus 83 g~vG~l~-~-~~~MLHfE~Y~g~~----~~g~Lt~~~~~y~RR~DL~DPt~~L~~~~ 133 (133)
+..+... . ....+|+|+..+.. . .+|..+++...
T Consensus 97 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 136 (145)
T 5KQB_A 97 AYSGNTGIQTTGAHLHFQRMKGGVGNAYA-----------------EDPKPFIDQLP 136 (145)
T ss_dssp EEECCCSCSSSCCEEEEEEEESSCSGGGB-----------------CCSHHHHTTST
T ss_pred EEccCCCCCCCCCeEEEEEEeCCCCCCcc-----------------cCchHHHhhCC
No 26
>8AF1_A Peptidase M23; ELASTASE, PEPTIDOGLYCAN, HYDROLASE, Beta-lytic protease antimicrobial activity Lysobacter, Metalloprotease; HET: GOL; 1.57A {Lysobacter capsici}
Probab=97.82 E-value=0.00094 Score=49.28 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCCCCCCCCCCCcccceeccCCCC--------CeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-
Q FD01845354_014 2 GGRQFRAPRSGGRKHAGCDLKFPPG--------TPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT- 71 (133)
Q Consensus 2 ~~r~FGa~R~gGR~HAg~DLy~~~g--------t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v- 71 (133)
....+++.+.+...|.++|+..+.+ ..+.|+ +|.+... . ...+.+.++. +...|..+. ...+
T Consensus 18 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~-----g~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (179)
T 8AF1_A 18 VGGAHTNTGSGNYPMSSLDMSLGGGWGSNQSGTWVSASA-AGSFKRH-S-----SCFAEVVHSGGWSTTYYHLM-NIQYN 89 (179)
T ss_dssp ECCCBCTTSCSSSCCCEEEEECSCCTTSCCTTCCEECSS-SEEEEEE-E-----TTEEEEECGGGEEEEEESEE-SCCCC
T ss_pred ecCccCCCCCCCCccceEEcccCCCCcccccCCceeecC-CeEEEEE-c-----CcEEEEEcCCcEEEEEEeee-cccCC
Q ss_pred CCCeecCCCeeEEEEEc--------CC-CCcEEEEEEecCCC
Q FD01845354_014 72 GGSSVKKGQIIAKVGRL--------NS-GSSMLHLEIYTNGA 104 (133)
Q Consensus 72 ~G~~V~~GQ~Ig~vG~l--------~~-~~~MLHfE~Y~g~~ 104 (133)
.|+.+.+||.|+.++.. .. ...+|||++.....
T Consensus 90 ~g~~~~~g~~ig~~g~~~~~~~~~~g~~~g~~l~~~~~~~~~ 131 (179)
T 8AF1_A 90 TGANVSMNTAIANPANTQAQALCNGGSSTGPHEHWSLKQNGS 131 (179)
T ss_dssp TTCEECTTCEEEEECSSHHHHTTTSCCCSSSCEEEEEEETTE
T ss_pred CCCeeeCCCeeeecccCccccccCCCCCCCCeEEEEEEECCE
No 27
>3UZ0_B Stage II sporulation protein Q; Transport Protein, Hybrid Transporter, Sporulation, Membrane; HET: SO4, MSE; 2.82A {Bacillus subtilis}
Probab=97.78 E-value=0.001 Score=45.16 Aligned_cols=91 Identities=24% Similarity=0.302 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred CCCC-CcccceeccCCCCCe--EEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTP--IYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~--V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~ 84 (133)
..+. +.|.++|+....++. +.++.+|.+... ...+.....+.+.+.. +...|+.+.. ..+ .|+.+.+|+.|+.
T Consensus 44 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~g~~ig~ 121 (152)
T 3UZ0_B 44 YNNTYSLSKGIDLAEKDGKDFDVSASLSGTVVKA-EKDPVLGYVVEVEHADGLSTVYQSLSE-VSVEQGDKVKQNQVIGK 121 (152)
T ss_dssp ETTEEEECCSEEEEETTCCCCEEECSSCEEEEEE-EEETTTEEEEEEECGGGEEEEEEEESC-CSCCTTCEECTTCEEEE
T ss_pred eCCcccccCCeEEeccCCCccEEEeCCCeEEEEE-EECCCceEEEEEEcCCCEEEEEEecce-eecCCCCEEcCCCEEEE
Q ss_pred EEEcCCC---CcEEEEEEecC
Q FD01845354_014 85 VGRLNSG---SSMLHLEIYTN 102 (133)
Q Consensus 85 vG~l~~~---~~MLHfE~Y~g 102 (133)
+|..... ..++|++++..
T Consensus 122 ~g~~g~~~~~~~~~~~~~~~~ 142 (152)
T 3UZ0_B 122 SGKNLYSEDSGNHVHFEIRKD 142 (152)
T ss_dssp BBCCTTCCTTCCBEEEEEEET
T ss_pred EcCCCcCCCCCCeEEEEEEEC
No 28
>PF01551.26 ; Peptidase_M23 ; Peptidase family M23
Probab=97.55 E-value=0.0057 Score=33.85 Aligned_cols=86 Identities=31% Similarity=0.447 Sum_probs=0.0 Template_Neff=15.000
Q ss_pred cccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecCCCeeEEEEEcCC-
Q FD01845354_014 15 KHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKKGQIIAKVGRLNS- 90 (133)
Q Consensus 15 ~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~vG~l~~- 90 (133)
.+.++|+....++.+.++.+|.+... ..-......+.+.++. +...|..+.. . . .|+.+..|+.++.++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~ 77 (95)
T Q8F3M4_LEPIN/2 1 FHTGLDFAGAQGAPILASADGVVSFA-GVNGGYGNTVIIDHDNGYKTMYAHCSKIT--IEQGTRVNTGTVIGAIGRTGSA 77 (95)
T ss_pred CCcceeccCCCCCceeecCCeEEEEE-eecCCceeEEEEECCCCEEEEEEEcccee--eCCCCEECCCCeEEEeecCCCC
Q ss_pred CCcEEEEEEecCC
Q FD01845354_014 91 GSSMLHLEIYTNG 103 (133)
Q Consensus 91 ~~~MLHfE~Y~g~ 103 (133)
....+|+++....
T Consensus 78 ~~~~~~~~~~~~~ 90 (95)
T Q8F3M4_LEPIN/2 78 TGPHLHFEVFLNG 90 (95)
T ss_pred CCcEEEEEEEECC
No 29
>3IT5_G Protease lasA; metallopeptidase, M23, beta-protein, Cell membrane, Cell outer membrane, Hydrolase, Membrane, Metal-binding, Metalloprotease, Protease, Zymogen; 2.0A {Pseudomonas aeruginosa}
Probab=97.55 E-value=0.0032 Score=46.02 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CcccceeccCC------CCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 14 RKHAGCDLKFP------PGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 14 R~HAg~DLy~~------~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
+.|.++|+... .++.+.++.+|.+.... -..+.+.|+. +...|..+ ....+ .|+.|.+|+.|+.+
T Consensus 30 ~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~------g~~v~~~~~~~~~~~~~~~-~~~~~~~g~~~~~g~~~g~~ 102 (182)
T 3IT5_G 30 YPYSSFDASYDWPRWGSATYSVVAAHAGTVRVLS------RCQVRVTHPSGWATNYYHM-DQIQVSNGQQVSADTKLGVY 102 (182)
T ss_dssp SSCCEEEEESSCCCTTSCCCEEECSSSEEEEEEE------TTEEEEECTTSEEEEEESE-ESCCCCTTCEECTTCEEEEE
T ss_pred CcccceeecCCCcccccCCCcEEcCCCeEEEEEe------CcEEEEECCCCeEEEEEec-CCCccCCCCEEcCCCeeeEe
Q ss_pred EEc--------CC-CCcEEEEEEecCC
Q FD01845354_014 86 GRL--------NS-GSSMLHLEIYTNG 103 (133)
Q Consensus 86 G~l--------~~-~~~MLHfE~Y~g~ 103 (133)
|.. .. ....+|+++....
T Consensus 103 g~~~~~~~~~~g~~~g~~~~~~~~~~~ 129 (182)
T 3IT5_G 103 AGNINTALCEGGSSTGPHLHFSLLYNG 129 (182)
T ss_dssp CSSHHHHTSSSCCCSSSCEEEEEEETT
T ss_pred cCCccccccccCCCCCCEEEEEEEECC
No 30
>3CSQ_D Morphogenesis protein 1; hydrolase, infection, phi29, Late protein; 1.8A {Bacteriophage phi-29}
Probab=97.42 E-value=0.0031 Score=49.43 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred ccceeccCC-CCCeEEEecCeEEEECCCcccCC---ccEEEEEeCC-EEEEEEEecC---CCCC-CCCeecCCCeeEEEE
Q FD01845354_014 16 HAGCDLKFP-PGTPIYAVADGVLVRNPYSFYSG---TSAVEIRHGE-LILRYGEIAN---GSYT-GGSSVKKGQIIAKVG 86 (133)
Q Consensus 16 HAg~DLy~~-~gt~V~Ai~dG~V~~~~~~FY~g---T~ai~I~H~~-~i~RYGEi~~---~~~v-~G~~V~~GQ~Ig~vG 86 (133)
|.++|+... .++.+.++.+|.|+.. ..-... ...+.++|.. ....|-.+.. ...+ .|+.|+.|+.|+.+|
T Consensus 191 ~~~~d~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~g~~~g~~g 269 (334)
T 3CSQ_D 191 TLCIDFVGKTEKYPYYAPCDCTCVWR-GDASAYLAWTSDKEVMCADGSVRYITWVNVHESPLPFDVGKKLKKGDLMGHTG 269 (334)
T ss_dssp SCCEEECCSSSSCEEECSSSEEEEEE-ETTTTEEEEEESSCEECTTSCEECEEEEEECCSSCCCCTTCEECTTSEEEECB
T ss_pred ceeecccCCCCCCceecCcceEEEEe-cCccccccccCeeEEEcCCCceEEEEEEecCCCCCcccCCCEEeCCCeeeecC
Q ss_pred EcCC-CCcEEEEEEecCCC
Q FD01845354_014 87 RLNS-GSSMLHLEIYTNGA 104 (133)
Q Consensus 87 ~l~~-~~~MLHfE~Y~g~~ 104 (133)
.... ....|||+++....
T Consensus 270 ~~g~~~g~~~~~~~~~~~~ 288 (334)
T 3CSQ_D 270 IGGNVTGDHWHFNVIDGKE 288 (334)
T ss_dssp CCC---CCBEEEEEEESSC
T ss_pred CCCccccCEEEEEEecCce
No 31
>6IK4_A Elastinolytic metalloprotease; M23 family, elastase, peptidoglycan, HYDROLASE; 1.9A {Pseudoalteromonas sp. CF6-2}
Probab=97.17 E-value=0.019 Score=41.46 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CcccceeccCCC------CCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 14 RKHAGCDLKFPP------GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 14 R~HAg~DLy~~~------gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
+.|.++|+.... ++.+.++.+|.+... . ...+.+.++. +...|.++. ...+ .|+.|.+|+.|+.+
T Consensus 28 ~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~-----g~~~~~~~~~g~~~~~~~~~-~~~~~~g~~v~~g~~ig~~ 100 (173)
T 6IK4_A 28 YPYSSLDFNNGSGGWGSNTPWVQAAHGGVITRF-S-----SCNIRVTHSSGFATNYYHMS-NLQYNNGDTVQPGTLLGRY 100 (173)
T ss_dssp SCCCEEEEECSCCSTTSCCCEEECSSCEEEEEE-E-----TTEEEEECTTSEEEEEESEE-SCCCCTTCEECTTCEEEEE
T ss_pred CccceEeecCCCCCCCCCCCcEecCCCeEEEEE-e-----CCEEEEEcCCCeEEEEEecC-CccCCCCCEECCCCEEEEe
Q ss_pred EEc--------CC-CCcEEEEEEecCC
Q FD01845354_014 86 GRL--------NS-GSSMLHLEIYTNG 103 (133)
Q Consensus 86 G~l--------~~-~~~MLHfE~Y~g~ 103 (133)
+.. .. ....||+++....
T Consensus 101 g~~~~~~~~~~g~~~g~~~~~~~~~~~ 127 (173)
T 6IK4_A 101 ANSYNQALCEGGQSSGPHVHFTLLQNG 127 (173)
T ss_dssp CSSHHHHTTTCCCCSSSCEEEEEEETT
T ss_pred eCCCccccccCCCCCCCeEEEEEEECC
No 32
>5GT1_A Choline binding protein A; S-layer proteins, Probiotics, CHOLINE-BINDING PROTEIN; 1.85A {Lactobacillus salivarius str. Ren}
Probab=97.17 E-value=0.032 Score=38.06 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred CcccceeccC--CCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecC---CCCC-CCCeecCCCeeEEEEE
Q FD01845354_014 14 RKHAGCDLKF--PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIAN---GSYT-GGSSVKKGQIIAKVGR 87 (133)
Q Consensus 14 R~HAg~DLy~--~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~---~~~v-~G~~V~~GQ~Ig~vG~ 87 (133)
..|.++|+.. ..+..+.++.+|.+... ..-......+.+.+......+..... ...+ .|+.+.+|+.++.++
T Consensus 55 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~- 132 (174)
T 5GT1_A 55 GFHDGLDFGSIDHPGSAVHAVHSGVVTQI-GYIAGLENYVVVRSDEYTFVYQEAFSNKGNISVKVGQQINTGDVIGYRD- 132 (174)
T ss_dssp GEECSEEEETTTSCCSEEECSBCEEEEEE-EEETTTEEEEEEECSSCEEEEEEEESSGGGBCCCTTCEECTTCEEEECC-
T ss_pred CceeeEeEeCCCCCCCEEEcCCCeEEEEE-EeCCCCeeEEEEEeCCCeEEEEEEeccCCCCCCCCCCEEcCCCEEEEeC-
Q ss_pred cCCCCcEEEEEEecCCCCCccccCCCCCCCCHHHcCCcHHHHhccC
Q FD01845354_014 88 LNSGSSMLHLEIYTNGASSASLTTRVGELRRRSDVTDPAPYLNVWK 133 (133)
Q Consensus 88 l~~~~~MLHfE~Y~g~~~~g~Lt~~~~~y~RR~DL~DPt~~L~~~~ 133 (133)
..++|+++.........+... +.......+|..+++.+.
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 171 (174)
T 5GT1_A 133 ----TSHLHLGITRETNVMKAIANS---FNNNGTWLDPRALIKNGI 171 (174)
T ss_dssp ----SSEEEEEEESCSCHHHHHHTT---TCCSSSEECHHHHHHHHH
T ss_pred ----CCEEEEEEEecCcccccccCc---cCCCCceeCHHHHhccCc
No 33
>5KVP_A Zoocin A endopeptidase; hydrolase, exoenzyme, anti-microbial, endopeptidase; HET: ZN, UNL; NMR {Streptococcus equi subsp. zooepidemicus}
Probab=96.86 E-value=0.079 Score=36.68 Aligned_cols=90 Identities=32% Similarity=0.460 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred CC-CcccceeccCCCCCeEEEecCeEEEECCCcccCC-------ccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCe
Q FD01845354_014 12 GG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSG-------TSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQI 81 (133)
Q Consensus 12 gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~g-------T~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~ 81 (133)
++ +.+.++|+....++.+.++.+|.+... ..-... ...+.+.+.. +...|+.+.... + .|+.+.+|+.
T Consensus 29 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~g~~ 106 (159)
T 5KVP_A 29 NGYPGHVGVDYAVPVGTPVRAVANGTVKFA-GNGANHPWMLWMAGNAVLIQHADGMHTGYAHLSKIS-VSTDSTVKQGQI 106 (159)
T ss_dssp SSCTTCSSEEEECCTTCEEECSSCEEEEEE-ECTTSCCSSSCSSCEEEEEECTTSCEEEEEEEEEES-CCTTCEECTTCE
T ss_pred CCCCCccEEEEeCCCCCEEEcCCCeEEEEe-eCCCCCcccccceeeEEEEEcCCCeEEEEEEecccc-CCCCCeECCCCe
Q ss_pred eEEEEEcCC-CCcEEEEEEecCC
Q FD01845354_014 82 IAKVGRLNS-GSSMLHLEIYTNG 103 (133)
Q Consensus 82 Ig~vG~l~~-~~~MLHfE~Y~g~ 103 (133)
|+.++.... ....+|+++....
T Consensus 107 ~g~~~~~g~~~~~~~~~~~~~~~ 129 (159)
T 5KVP_A 107 IGYTGATGQVTGPHLHFEMLPAN 129 (159)
T ss_dssp EEEEBCCSSSSCCEEEEEEECSS
T ss_pred eEeccCCCCCCCCEEEEEEeeCC
No 34
>2F3G_A GLUCOSE-SPECIFIC PHOSPHOCARRIER; PHOSPHOTRANSFERASE, SIGNAL TRANSDUCTION, PHOSPHOCARRIER; 2.13A {Escherichia coli} SCOP: b.84.3.1
Probab=96.35 E-value=0.045 Score=40.71 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred cCCCCCeEEEecCeEEEECCCcccCCccEEEEEe--CC-EEEEEEE----ecC---CCCC-CCCeecCCCeeEEE
Q FD01845354_014 22 KFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRH--GE-LILRYGE----IAN---GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 22 y~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H--~~-~i~RYGE----i~~---~~~v-~G~~V~~GQ~Ig~v 85 (133)
..+.+..++||.+|+|... ....+++.|++ |. +++..|. +.. ...+ .||.|++||+|+.+
T Consensus 52 i~~~~~~i~aP~~g~v~~~----~~~~~~i~i~~~~g~~~~~~i~~~~~~l~~~~~~~~v~~g~~v~~g~~l~~~ 122 (168)
T 2F3G_A 52 IKPTGNKMVAPVDGTIGKI----FETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEF 122 (168)
T ss_dssp EEECSSEEECSSSEEEEEE----CTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEE
T ss_pred EcCCCCeEEeCcceEEEEE----CCCCCEEEEEeCCccEEEEEEecChhhcCCCceeEeeCCCCEEcCCCEEEEe
No 35
>PF00358.24 ; PTS_EIIA_1 ; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Probab=96.32 E-value=0.049 Score=36.29 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred cccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEe--CC-EEEEEEEecC-------CCCC-CCCeecCCCeeE
Q FD01845354_014 15 KHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRH--GE-LILRYGEIAN-------GSYT-GGSSVKKGQIIA 83 (133)
Q Consensus 15 ~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H--~~-~i~RYGEi~~-------~~~v-~G~~V~~GQ~Ig 83 (133)
.+.|+++... +..++||.+|+|... ......+.+.+ +. ..+-.+--.. ...+ .||.|++||.|+
T Consensus 25 ~~~~~~~~~~-~~~~~ap~~G~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~g~~l~ 99 (125)
T C4L0E1_EXISA/4 25 MGKGIAIMPS-EGAVYAPFDGEIVTV----YPSKHAIGLRSDTGVEVLIHIGLDTVKLNGQYFETVVTDGQKVVEGELLV 99 (125)
T ss_pred CCCcEEEecc-CCeEECCcceEEEEE----cCCCCEEEEEcCCCCEEEEEEECCHHHhCCCceeEecCCCCEEcCCCEEE
Q ss_pred EE
Q FD01845354_014 84 KV 85 (133)
Q Consensus 84 ~v 85 (133)
.+
T Consensus 100 ~~ 101 (125)
T C4L0E1_EXISA/4 100 RF 101 (125)
T ss_pred Ee
No 36
>2GPR_A GLUCOSE-PERMEASE IIA COMPONENT; PHOSPHOTRANSFERASE, GLUCOSE PERMEASE, ENZYME IIA, MYCOPLASMA; 2.5A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=96.16 E-value=0.061 Score=38.33 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred cccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEe--CC-EEEEEEEecC-------CCCC-CCCeecCCCeeE
Q FD01845354_014 15 KHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRH--GE-LILRYGEIAN-------GSYT-GGSSVKKGQIIA 83 (133)
Q Consensus 15 ~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H--~~-~i~RYGEi~~-------~~~v-~G~~V~~GQ~Ig 83 (133)
...|+.+....+ .++||.+|+|... +....++.+.+ +. ..+..+.-.. ...+ .||.|++||+|+
T Consensus 34 ~~~g~~i~~~~~-~l~ap~~G~v~~~----~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~g~~l~ 108 (154)
T 2GPR_A 34 LGDGFAINPKSN-DFHAPVSGKLVTA----FPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLV 108 (154)
T ss_dssp SCEEEEEEESSS-EEECSSCEEEEEC----CTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEE
T ss_pred cCeEEEEeCCCC-eEECCceEEEEEe----CCCCCEEEEEeCCCcEEEEEeecCccccCCCCeEEEeCCCCEECCCCEEE
Q ss_pred EE
Q FD01845354_014 84 KV 85 (133)
Q Consensus 84 ~v 85 (133)
.+
T Consensus 109 ~~ 110 (154)
T 2GPR_A 109 TV 110 (154)
T ss_dssp EE
T ss_pred Ee
No 37
>1GPR_A GLUCOSE PERMEASE; PHOSPHOTRANSFERASE; 1.9A {Bacillus subtilis} SCOP: b.84.3.1
Probab=95.88 E-value=0.092 Score=38.48 Aligned_cols=58 Identities=19% Similarity=0.493 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEEe--CC-EEEEEE----EecC---CCCC-CCCeecCCCeeEEE
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRH--GE-LILRYG----EIAN---GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H--~~-~i~RYG----Ei~~---~~~v-~G~~V~~GQ~Ig~v 85 (133)
+.+..++||.+|+|... .....++.+.+ |. +.+..| ++.. ...+ .|+.|++||+|+.+
T Consensus 47 ~~~~~~~aP~~G~v~~~----~~~~~~i~i~~~~g~~~~~~i~~~~~~~~~~~~~~~v~~g~~v~~g~~l~~i 115 (162)
T 1GPR_A 47 PSEGIVVSPVRGKILNV----FPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEV 115 (162)
T ss_dssp ESSCEEECSSSEEEEEE----CTTSSEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEE
T ss_pred cCCCeEEcCCccEEEEE----CCCCcEEEEEcCCCCEEEEEeecCccccCCCCeeEeeCCCCEECCCCEEEEE
No 38
>8H02_A DNA-directed RNA polymerase subunit beta'; RNA polymerase, SI3, TRANSCRIPTION; 1.552A {Synechococcus elongatus (strain PCC 7942 / FACHB-805)}
Probab=95.69 E-value=0.1 Score=33.22 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CCCCCeEEEecCeEEEECCCcc----------------cCCccEEEEEeCCEEEEEEEecC-CCCC-CCCeecCCCeeEE
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSF----------------YSGTSAVEIRHGELILRYGEIAN-GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~F----------------Y~gT~ai~I~H~~~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~ 84 (133)
...+++|+|+.+|+|.-. ... -.+...+.+.| ....+|-.-.. ...+ .|+.|++||+|+.
T Consensus 1 g~~~~~i~a~~~G~v~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~v~~g~~v~~g~~i~~ 78 (84)
T 8H02_A 1 GETARLLRAPVAGTIKLG-KKARTRPYRTRHGEEALLAEANFDLVLEGK-GRKETFAILQGSTIFVQDGDKVAAEAILAE 78 (84)
T ss_pred CcccceEEcCCCcEEEcC-CCccceeEEcCCCcEEEEEccCeEEEEecC-CeeEEEEECCCCEEEEcCCCEEeCCcEEEE
Q ss_pred EEEcCC
Q FD01845354_014 85 VGRLNS 90 (133)
Q Consensus 85 vG~l~~ 90 (133)
++..+.
T Consensus 79 ~~~~~~ 84 (84)
T 8H02_A 79 VPVSGR 84 (84)
T ss_pred ccCCCC
No 39
>1F3Z_A GLUCOSE-SPECIFIC PHOSPHOCARRIER; PHOSPHOTRANSFERASE, SIGNAL TRANSDUCTION, SUGAR TRANSPORT; 1.98A {Escherichia coli} SCOP: b.84.3.1
Probab=95.51 E-value=0.12 Score=37.70 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEEe--CC-EEEEEEEecC-------CCCC-CCCeecCCCeeEEE
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRH--GE-LILRYGEIAN-------GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H--~~-~i~RYGEi~~-------~~~v-~G~~V~~GQ~Ig~v 85 (133)
+.+..++||.+|+|... ....+++.+.+ |. +.+..+.-.. ...+ .||.|++||+|+.+
T Consensus 47 ~~~~~i~ap~~G~v~~~----~~~~~~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~~v~~g~~v~~g~~l~~~ 115 (161)
T 1F3Z_A 47 PTGNKMVAPVDGTIGKI----FETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEF 115 (161)
T ss_dssp ECSSEEECSSSEEEEEE----CTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEE
T ss_pred cCCCeEEcCcceEEEEE----cCCCCEEEEEeCCCcEEEEEeeccHHHhCCCcceeeecCCCeecCCCEEEEe
No 40
>PF01333.23 ; Apocytochr_F_C ; Apocytochrome F, C-terminal
Probab=93.54 E-value=0.47 Score=33.27 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecCCCeeEE
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~ 84 (133)
+..++|..+|+|... ..-......|.|.+.. ....|---.. ...+ .|+.|++||+|+.
T Consensus 2 ~~~v~a~~~G~v~~~-~~~~~~~~~i~i~~~~g~~~~~~i~~~~~l~V~~g~~V~~G~~l~~ 62 (118)
T K9S593_9CYAN/2 2 NAVYNASAAGTISKI-AKTDLGGAEVTIATEDGKTVVDTVPAGPQLAVSEGQTVAAGAALTN 62 (118)
T ss_pred CceeecCCCEEEEEE-EECCCCCcEEEEEcCCCcEEEEEeCCCCeEEeCCCCEEccCccccc
No 41
>PF06898.15 ; YqfD ; Putative stage IV sporulation protein YqfD
Probab=93.17 E-value=0.19 Score=43.64 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecC-CCCC-CCCeecCCCee
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIAN-GSYT-GGSSVKKGQII 82 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~-~~~v-~G~~V~~GQ~I 82 (133)
.....+++|..||+|.+. ++.. ...+ +||.|+|||+|
T Consensus 174 ~~~~~~ivA~~dGvI~~i-----------------------~v~~G~~~V~~Gd~V~kGdvL 212 (367)
T Q3AEZ9_CARHZ/5 174 KYKKADIVAKRDGIIKEI-----------------------LVFRGSLRVKPGQKVTAGEVL 212 (367)
T ss_pred CCCcccEEECCCeEEEEE-----------------------EEEeCeEeeCCCCeeCCCCEE
No 42
>6GAP_A Outer capsid protein sigma-1; cell attachment protein, reovirus sigma1, coiled coil, beta-spiral repeat, VIRAL PROTEIN; 2.15A {Mammalian orthoreovirus 3 Dearing}
Probab=91.90 E-value=0.26 Score=40.34 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CCCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCC--ccEEEEEeC-C-EEEEEEEecC
Q FD01845354_014 6 FRAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSG--TSAVEIRHG-E-LILRYGEIAN 67 (133)
Q Consensus 6 FGa~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~g--T~ai~I~H~-~-~i~RYGEi~~ 67 (133)
||.+-.++..|-|+||=.+.|++|+ .+|+|+....+.+.= +..+.|.|| . +--+||.+..
T Consensus 187 ~g~~~~~~~~~~~~di~~~~G~~~~--~~g~v~~~~t~~~~y~~g~~~~~~~~~~g~~t~~~h~~~ 250 (261)
T 6GAP_A 187 LNDGLTLSGNNLAIRLPGNTGLNIQ--NGGLQFRFNTDQFQIVNNNLTLKTTVFDSINSRIGATEQ 250 (261)
T ss_dssp BCTTEEEETTEEEECCCSCSSEEEE--TTEEEECBCTTTEEEETTEEEECTTTTHHHHC-------
T ss_pred ecCCeeeeCceeeeecCCCceeeEe--cCceEEEEeCceeeEECCEEEEeceeecCCcCceehhhh
No 43
>2LMC_B DNA-directed RNA polymerase subunit beta; TRANSFERASE, TRANSCRIPTION; NMR {Enterobacteria phage T7}
Probab=91.68 E-value=1 Score=30.88 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCE-EEEEEEecC--CCCC-CCCeecCCCeeEE
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGEL-ILRYGEIAN--GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~-i~RYGEi~~--~~~v-~G~~V~~GQ~Ig~ 84 (133)
.+.+..++|..+|+|. . ..=..+...+.|.-..- ..+--+|.. ...+ .|+.|++||+|..
T Consensus 20 ~~~~~avia~~~G~v~-i-~~~~~~~~~i~i~~~~~~~~~~y~ip~~~~l~V~~G~~V~~Gd~Lt~ 83 (84)
T 2LMC_B 20 HMKEPAILAEISGIVS-F-GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 83 (84)
T ss_dssp ----CCBSBSSSEEEE-E-ECCSSSCCEEEEEESSSSCCEEEECCTTSCCSSCTTEEECBSCSSBC
T ss_pred CCCCCceEeccCeEEE-E-eeccCCeEEEEEEcCCCCcceEEecCCCCceEECCCCEECCCCcccc
No 44
>5C22_B Chromosomal hemolysin D; HlyD, type I secretion system, Zn SAD, multicrystal averaging, PROTEIN TRANSPORT; 2.302A {Escherichia coli}
Probab=90.94 E-value=1 Score=34.70 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCCCCCeecCCCeeEEEEEcCCCCcEEEEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYTGGSSVKKGQIIAKVGRLNSGSSMLHLEI 99 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~ 99 (133)
..|+||.||+|... .....|+.|.+|++|+.|-.... ..++.+.+
T Consensus 235 ~~i~Ap~~G~V~~~---------------------------~~~~~G~~v~~g~~l~~i~~~~~-~~~v~~~V 279 (279)
T 5C22_B 235 SVIRAPVSGKVQQL---------------------------KVHTEGGVVTTAETLMVIVPEDD-TLEVTALV 279 (279)
T ss_dssp EEEECSSCEEEECC---------------------------CCCCTTCEECTTCCCEEEEC------------
T ss_pred ceEEcCCCceEEEE---------------------------eeCCCcceecCCCeeEEEecCCC-ceEEEEeC
No 45
>5C22_B Chromosomal hemolysin D; HlyD, type I secretion system, Zn SAD, multicrystal averaging, PROTEIN TRANSPORT; 2.302A {Escherichia coli}
Probab=89.46 E-value=0.6 Score=35.88 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
..|.|+.+|+|... . .|+.|++||+|+.+
T Consensus 4 ~~i~~~~~G~I~~i------------------------------~v~~G~~V~~G~~L~~l 34 (279)
T 5C22_B 4 KEIKPIENSIVKEI------------------------------IVKEGESVRKGDVLLKL 34 (279)
T ss_dssp EEECCSSCEEEEEE------------------------------CCCTTCEECTTCEEEEE
T ss_pred ccccCcCCcEEEEE------------------------------EeeCCCeecCCCEEEEe
No 46
>PF00529.24 ; CusB_dom_1 ; Cation efflux system protein CusB domain 1
Probab=89.22 E-value=0.99 Score=36.51 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred ccCCCCCe-EEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 21 LKFPPGTP-IYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 21 Ly~~~gt~-V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
+....... |.|+.+|+|... . .|+.|++||+|+.+
T Consensus 24 v~~~~~~~~i~a~~~G~v~~i------------------------------~v~~G~~V~~Gd~L~~l 61 (363)
T Q46972_ECOLX/2 24 ITTWPRPVNVYSGVQGVVIKQ------------------------------FVTEGQRIKKGDPIYLI 61 (363)
T ss_pred EEeCCCcEEEEcCCCcEEEEE------------------------------EEcCCCEEcCCCeEEEE
No 47
>PF13437.10 ; HlyD_3 ; HlyD family secretion protein
Probab=88.00 E-value=3.4 Score=25.89 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
.|.||.||+|... . .|+.|.+|+.++++-. ..++.++++
T Consensus 1 ~i~ap~~G~v~~~------------------------------~~~~g~~~~~~~~~~~~~~----~~~~~v~~~ 41 (102)
T E0TIK4_PARBH/1 1 AVRAPIGGTIASY------------------------------SVGPGQSVKAGDPLFRMVD----TDRLIVRVA 41 (102)
T ss_pred CeecCCceEEEEe------------------------------eeCCCCeecCCCeeEEEee----CCcEEEEEE
No 48
>7SGR_L Membrane fusion protein (MFP) family protein,Hemolysin secretion protein D, chromosomal; hydrolase, transport, MEMBRANE PROTEIN; HET: 6OU; 2.9A {Escherichia coli CFT073}
Probab=87.09 E-value=1.4 Score=35.66 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .||.|++||+|+++
T Consensus 98 ~i~~~~~G~v~~i------------------------------~v~~G~~V~~G~~L~~l 127 (356)
T 7SGR_L 98 EIKPIENSIVKEI------------------------------IVKEGESVRKGDVLLKL 127 (356)
T ss_dssp ------------------------------------------------------------
T ss_pred EEecCCCceEEEE------------------------------EecCCCEECCCCEEEEE
No 49
>5NEN_B Lipase C; lipase, hydrolase; 2.901A {Serratia marcescens}
Probab=85.55 E-value=3.7 Score=34.99 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
...|+||.||+|... ... .|+.|.+|++|+.|... ...+.++++
T Consensus 271 ~~~i~AP~~G~V~~~----------------------------~~~~~G~~v~~g~~l~~I~~~---~~~~~v~~~ 315 (448)
T 5NEN_B 271 NTAITSPVDGTVVGL----------------------------NIFTQGGVVGAGDHLMDVVPS---QATLVVDSR 315 (448)
T ss_dssp CC-CCSSSCC------------------------------------------------------------------
T ss_pred ccEEECCCCeEEEec----------------------------eeccCCceecCCCeeEEEecC---CCceEEEEE
No 50
>3FPP_B Macrolide-specific efflux protein macA; Hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein, Antibiotic resistance, Cell inner membrane, Cell; 2.99A {Escherichia coli}
Probab=85.46 E-value=2 Score=34.52 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|++|++||+|+.+
T Consensus 33 ~i~~~~~g~i~~~------------------------------~v~~G~~V~~G~~l~~l 62 (341)
T 3FPP_B 33 DVGAQVSGQLKTL------------------------------SVAIGDKVKKDQLLGVI 62 (341)
T ss_dssp EECCSSCEECCEE------------------------------CCCTTCBCCTTCEEEEC
T ss_pred EEEeccCeEEEEE------------------------------EeCCCCEEeCCCEEEEE
No 51
>3T53_C Cation efflux system protein CusB; transmembrane helix, heavy metal efflux, TRANSPORT PROTEIN; 3.37A {Escherichia coli}
Probab=84.81 E-value=2.2 Score=34.98 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... .. + .|+.|++||+|+.+
T Consensus 46 ~i~a~~~G~v~~i---------------------------~~-v~~G~~V~~G~~l~~i 76 (336)
T 3T53_C 46 IVQARAAGFIDKV---------------------------YP-LTVGDKVQKGTPLLDL 76 (336)
T ss_dssp EEECSSCEEEEEE---------------------------CS-CCTTCEECTTCEEEEE
T ss_pred EEEecCCeeEEEe---------------------------eE-cCCCCeecCCCeeEEe
No 52
>4TKO_B EmrA; MFS, Multidrug resistance, periplasmic adaptor, MEMBRANE PROTEIN; HET: IPA; 2.85A {Aquifex aeolicus}
Probab=84.64 E-value=1.9 Score=34.91 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.||.+|+|... . .|+.|++||+|+.+
T Consensus 22 ~v~~~~~g~v~~i------------------------------~v~~G~~V~~Gd~L~~l 51 (358)
T 4TKO_B 22 YLSFRVSGKVIEV------------------------------YKDLGDYVKRGEALAKL 51 (358)
T ss_dssp EEECSSCEEEEEE------------------------------CCCTTCEECTTCEEEEE
T ss_pred eeccccceEEEEE------------------------------EecCCCEEeCCcEEEEe
No 53
>8DCK_D Membrane fusion protein (MFP) family protein; hydrolase, transport, MEMBRANE PROTEIN; HET: ATP; 3.4A {Escherichia coli CFT073}
Probab=84.08 E-value=1.8 Score=36.76 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
..|.|+.+|+|... . .||.|++||+|+.+
T Consensus 97 ~~i~~~~~G~V~~i------------------------------~v~~G~~V~~Gd~L~~l 127 (478)
T 8DCK_D 97 KEIKPIENSIVKEI------------------------------IVKEGESVRKGDVLLKL 127 (478)
T ss_dssp -------------------------------------------------------------
T ss_pred EEeccCCCcEEEEE------------------------------EecCCCEEcCCCEEEEE
No 54
>4TKO_B EmrA; MFS, Multidrug resistance, periplasmic adaptor, MEMBRANE PROTEIN; HET: IPA; 2.85A {Aquifex aeolicus}
Probab=83.72 E-value=5.4 Score=32.43 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
...|.||.||+|... . .|+.|.+|++|+.|... .. +.++++
T Consensus 219 ~~~i~Ap~~G~V~~~------------------------------~~~~G~~v~~g~~l~~i~~~---~~-~~v~~~ 261 (358)
T 4TKO_B 219 DTVLIAPFDGVVAKR------------------------------FISRGDVVRAGQPAFALVNP---ES-FYVEVL 261 (358)
T ss_dssp TTEEECSSSEEEEEE------------------------------CCCTTCEECTTCEEEEEECG---GG-EEEEEE
T ss_pred cCEEEccCCeEEEEe------------------------------ecCCCCeeccCceeEEEeCC---Cc-eEEEEE
No 55
>1Q90_A Apocytochrome f; MEMBRANE PROTEIN COMPLEX, PHOTOSYNTHESIS, ELECTRON TRANSFER, OXYDOREDUCTASE, CHLOROPHYLL, BETA-CAROTENE, STIGMATELLIN, SULFOQUINOVOSYLDIACYLGLYCEROL, MONOGALACTOSYLDIACYLGLYCEROL; HET: TDS, LMG, CLA, SQD, BCR, LFA, HEC; 3.1A {Chlamydomonas reinhardtii} SCOP: b.2.6.1, l.1.1.1, b.84.2.2, f.23.23.1
Probab=82.18 E-value=3.6 Score=36.57 Aligned_cols=74 Identities=22% Similarity=0.109 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcc-cCCccEEEEEeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSF-YSGTSAVEIRHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~F-Y~gT~ai~I~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.||---.-++-...+.+.-|.++|+|......= |.|.|.|+|++.+--.-.-.|.+ ...+ .||.|+.+|+|
T Consensus 151 ~rnrgRgql~~~g~~snn~~~~a~~~g~i~~i~~~~~~~~~~~i~i~~~~g~~~~~~ip~g~~l~v~~g~~v~~~q~l 228 (292)
T 1Q90_A 151 GGNRGRGQVYPDGKKSNNTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPL 228 (292)
T ss_dssp EEEESCCSCCTTSCCCTTSCCBCSSSEEEEEEEECCTTTCCEEEEEECSSSCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred chhhHHHhHhhcchhcCCccccccccceeEEeeeccccCCceEEEEecCCCcEEEEEeCCCCeeEecCCCeEecCCcc
No 56
>3LNN_A Membrane fusion protein (MFP) heavy metal cation efflux ZneB (CzcB-like); membrane fusion protein, Structural Genomics, PSI-2, Protein Structure Initiative, Center for Structures of Membrane Proteins, CSMP; 2.796A {Cupriavidus metallidurans}
Probab=82.15 E-value=3.1 Score=33.88 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+++
T Consensus 59 ~v~a~~~G~v~~i------------------------------~v~~G~~V~~G~~l~~l 88 (359)
T 3LNN_A 59 KVLPPLAGRIVSL------------------------------NKQLGDEVKAGDVLFTI 88 (359)
T ss_dssp EECCSSCEEEEEC------------------------------CSCTTCEECTTCEEEEE
T ss_pred EEeCCCceEEEEE------------------------------ecCCCCeecCCCEEEEE
No 57
>4EPI_A Pesticin, Lysozyme Chimera; bacterial toxin, TOXIN, HYDROLASE; 1.74A {Yersinia pestis}
Probab=81.96 E-value=0.88 Score=39.13 Aligned_cols=77 Identities=12% Similarity=0.002 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CC-EEEEEEEecC-CCCC-CCCee-----cCCCeeEEEEEcCC---------------------CCcEEEEEEecCCCCC
Q FD01845354_014 56 GE-LILRYGEIAN-GSYT-GGSSV-----KKGQIIAKVGRLNS---------------------GSSMLHLEIYTNGASS 106 (133)
Q Consensus 56 ~~-~i~RYGEi~~-~~~v-~G~~V-----~~GQ~Ig~vG~l~~---------------------~~~MLHfE~Y~g~~~~ 106 (133)
+. |..||||+.+ ++.+ .++.| ..|.+|...|.+.. ...|+|+|-|...+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (330)
T 4EPI_A 21 GSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETG 100 (330)
T ss_dssp SCCEESCCCCCC-CGGGTTSCEEEECTTCSSCEEEEETTEEEEEEESSCCSSSBCCCCBCCSCTTTCCCCTTSCEEEEEE
T ss_pred CcccccCCCCccccceeecCCeeecCCCCCCceEEEEeccccCchHhcCCccccccccccccCCCcceeehhheEEEeec
Q ss_pred -c-------cccCCCCCCCCHHHcCCcHH---HHhcc
Q FD01845354_014 107 -A-------SLTTRVGELRRRSDVTDPAP---YLNVW 132 (133)
Q Consensus 107 -g-------~Lt~~~~~y~RR~DL~DPt~---~L~~~ 132 (133)
. .+.....++.++-|++|+.. +|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (330)
T 4EPI_A 101 QEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNN 137 (330)
T ss_dssp EEETTEEEEEEEEEEECHHHHHHHHTCGGGHHHHHTS
T ss_pred cCCCCeeEEEeeechhhHHHHHHhcccccCHHHHhhc
No 58
>2F1M_B Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, TRANSPORT PROTEIN; HET: MSE; 2.71A {Escherichia coli} SCOP: f.46.1.0
Probab=81.87 E-value=3.2 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+.+
T Consensus 24 ~i~a~~~g~I~~~------------------------------~v~~G~~V~~G~~L~~i 53 (277)
T 2F1M_B 24 EVRPQVSGIILKR------------------------------NFKEGSDIEAGVSLYQI 53 (277)
T ss_dssp EECCSSCEEEEEE------------------------------CSCTTCEECTTSCSEEE
T ss_pred EecCCCCeEEEEE------------------------------ecCCCCEECCCCEEEEE
No 59
>5NG5_B Multidrug efflux pump subunit AcrA; multi-drug efflux membrane transport RND superfamily Drug resistance, membrane protein; HET: 5QF; 6.5A {Escherichia coli}
Probab=81.77 E-value=3.2 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+++
T Consensus 43 ~i~~~~~G~i~~~------------------------------~v~~G~~V~~G~~L~~i 72 (373)
T 5NG5_B 43 EVRPQVSGIILKR------------------------------NFKEGSDIEAGVSLYQI 72 (373)
T ss_dssp EECCSSCEEEEEE------------------------------CSCTTSEECTTCBCEEE
T ss_pred EeccccCeEEEEE------------------------------ecCCCCEecCCCeeEEE
No 60
>1VF7_H Multidrug resistance protein mexA; alpha hairpin, beta barrel, MEMBRANE PROTEIN; 2.4A {Pseudomonas aeruginosa} SCOP: f.46.1.1
Probab=81.59 E-value=3.1 Score=34.40 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
..|.|+.+|+|... . .|+.|++||+|+++
T Consensus 44 ~~v~a~~~G~i~~~------------------------------~v~~G~~V~~G~~L~~~ 74 (369)
T 1VF7_H 44 AEVRPQVNGIILKR------------------------------LFKEGSDVKAGQQLYQI 74 (369)
T ss_dssp EEECCSSCEEEEEE------------------------------CSCTTCEECTTCEEEEE
T ss_pred eeeecccCeEEEEE------------------------------EecCCCeecCCCeeEEE
No 61
>PF16576.9 ; HlyD_D23 ; Barrel-sandwich domain of CusB or HlyD membrane-fusion
Probab=81.45 E-value=3.4 Score=30.92 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-C--CCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-G--GSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~--G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . . |+.|++||+|+++
T Consensus 21 ~v~~~~~g~v~~~------------------------------~v~~~G~~V~~G~~l~~l 51 (224)
T Q3A3U9_SYNC1/1 21 SINAKVDGWIERL------------------------------YVDETGQMVKNGQPLLAL 51 (224)
T ss_pred EEecccccEEEEE------------------------------EECCCCCeeeCCCeeEEE
No 62
>2QJ8_A Mlr6093 protein; Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, hydrolase; HET: MSE; 2.0A {Mesorhizobium loti}
Probab=81.09 E-value=4 Score=33.86 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
..|.|+.+|..+.. + .|+.|++||+||++
T Consensus 258 ~~~~~~~~G~~~~~------------------------------~~~g~~v~~G~~lg~i 287 (332)
T 2QJ8_A 258 DQLKSPSPGIFEPR------------------------------CSVMDEVEQGDVVGVL 287 (332)
T ss_dssp GEEECSSSEEEEEC------------------------------SCTTCEECTTCEEEEE
T ss_pred ccEeCCCCceEEEc------------------------------cCCCCeecCCCEEEEE
No 63
>4L8J_A Putative efflux transporter; HlyD family secretion protein, PF00529 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure; HET: GOL, PEG, MSE; 2.06A {Bacteroides eggerthii}
Probab=80.76 E-value=4.6 Score=32.25 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+.+
T Consensus 36 ~i~~~~~G~v~~~------------------------------~v~~G~~V~~G~~l~~l 65 (328)
T 4L8J_A 36 KLAFRVSGQIINL------------------------------PVVEGQRVKKGQLIAAI 65 (328)
T ss_dssp EEECSSCEEEEEC------------------------------CCCTTCEECTTCEEEEE
T ss_pred EEEeecceEEEEE------------------------------EeeCCCeEcCCCEEEEE
No 64
>5NEN_B Lipase C; lipase, hydrolase; 2.901A {Serratia marcescens}
Probab=80.61 E-value=3.3 Score=35.22 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+.+
T Consensus 44 ~i~~~~~G~V~~i------------------------------~v~~G~~V~~Gd~L~~l 73 (448)
T 5NEN_B 44 TVQAPASGIIKNI------------------------------AVRDGDKVKAGEVLVQL 73 (448)
T ss_dssp CCCCC-------------------------------------------------------
T ss_pred EEeCCCCceEEEE------------------------------EEeCCCEECCCCEEEEe
No 65
>PF12700.11 ; HlyD_2 ; HlyD family secretion protein
Probab=78.71 E-value=4.8 Score=33.61 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred EEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 29 IYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
|.|+.+|+|.-. + .|+.|++||+|+++
T Consensus 67 i~~~~~g~v~~~------------------------------v~~G~~V~kG~~L~~l 94 (420)
T A0A140L5Y8_9CL 67 VKSNHEGSIKYF------------------------------VQDGEKVEKGYKITEI 94 (420)
T ss_pred EEcCCCceeEEE------------------------------ccCCCeecCCCEEEEE
No 66
>1E2W_B CYTOCHROME F; ELECTRON TRANSPORT PROTEINS, INTERNAL WATER CHAIN, PHOTOSYNTHETIC FUNCTION IMPAIRED; HET: HEC; 1.6A {CHLAMYDOMONAS REINHARDTII} SCOP: b.2.6.1, b.84.2.2
Probab=78.29 E-value=6.2 Score=34.21 Aligned_cols=74 Identities=22% Similarity=0.084 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcc-cCCccEEEEEeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSF-YSGTSAVEIRHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~F-Y~gT~ai~I~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.+|---..++-.......-|...|+|......= |.|.+.|+|++.+--.-.-.|.+ ...+ .||.|+.+|+|
T Consensus 151 ~rn~~Rg~i~~~~~~~~~~~~~~~~~g~i~~i~~~~~~~~~~~~~i~~~~g~~~~~~ip~g~~l~v~~g~~v~~~q~l 228 (251)
T 1E2W_B 151 GGNRGRGQVYPDGKKSNFTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPL 228 (251)
T ss_dssp EEEESCCSBCTTSCBCSSSCCBCSSCEEEEEEECCSSSSSCEEEEEECTTSCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred chhhHhHhhHhcchhcCCCccccccCCeEEEEeeccccCCceEEEEecCCCcEEEEEeCCCCeeeeCCCCeEecCCCc
No 67
>PF07831.17 ; PYNP_C ; Pyrimidine nucleoside phosphorylase C-terminal domain
Probab=78.27 E-value=3.5 Score=26.63 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++||+|+++
T Consensus 38 ~~~G~~V~~g~~l~~i 53 (75)
T Q9RX72_DEIRA/3 38 KKPGEAVGAGEAVLRL 53 (75)
T ss_pred eCCCCeeCCCCeEEEE
No 68
>PF16576.9 ; HlyD_D23 ; Barrel-sandwich domain of CusB or HlyD membrane-fusion
Probab=78.00 E-value=13 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
.|.||.||+|... . .|+.|.+|++|+++.. ...+.++++
T Consensus 120 ~i~ap~~G~v~~~------------------------------~~~~g~~v~~g~~l~~i~~----~~~~~i~~~ 160 (224)
T Q3A3U9_SYNC1/1 120 TLYAPSKGVVTMK------------------------------MAMPGQFIKAGQELFQISD----ISKVWVYAD 160 (224)
T ss_pred EEEcCCCeEEEEE------------------------------eccCCCeecCCCEEEEeec----cceeEEEEE
No 69
>4DK1_A Putative MacA, Multidrug resistance protein mexA; alpha-hairpin, lipoyl, beta-barrel domains, PERIPLASMIC PROTEIN, MEMBRANE PROTEIN; HET: MSE; 3.499A {Aggregatibacter actinomycetemcomitans}
Probab=77.38 E-value=6.3 Score=32.11 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+.+
T Consensus 34 ~v~a~~~G~v~~~------------------------------~v~~G~~V~~G~~l~~l 63 (341)
T 4DK1_A 34 DVGAQVSGKITKL------------------------------YVKLGQQVKKGDLLAEI 63 (341)
T ss_dssp EECCSCCSCBCCC------------------------------CCCSSCEECTTCCCCCB
T ss_pred EEEecCceEEEEE------------------------------EcCCCCeecCCCEEEEE
No 70
>PF04952.18 ; AstE_AspA ; Succinylglutamate desuccinylase / Aspartoacylase family
Probab=76.41 E-value=8.3 Score=30.13 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
..+.|+.+|.+... + .|+.|++||+||++
T Consensus 206 ~~~~~~~~G~~~~~------------------------------~~~g~~v~~g~~lg~~ 235 (272)
T A0A1U7EYD6_NAT 206 TWLRADAGGLVEMY------------------------------HDRGDIVEAGDRICTI 235 (272)
T ss_pred eeEEeCCCeeEEEc------------------------------CCCCCeeeCCCeEEEE
No 71
>8EIP_C Succinylglutamate desuccinylase; CphZ, HYDROLASE, cyanophycin; HET: 7ID; 2.24A {Acinetobacter baylyi ADP1}
Probab=76.31 E-value=6.7 Score=32.82 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
..|.|+.+|.+... + .|+.|++||+||++
T Consensus 293 ~~v~a~~~g~~~~~------------------------------~~~g~~V~~Ge~lg~~ 322 (370)
T 8EIP_C 293 QQLKAPCQGLIVYH------------------------------NRLGDFVRSGDKVVSI 322 (370)
T ss_dssp EEEECSSSEEEEES------------------------------SCTTCEECTTCEEEEE
T ss_pred EEEeCCCCEEEEEe------------------------------cCCCCEECCCCEEEEE
No 72
>3NE5_C Cation efflux system protein cusB; Transmembrane helix, METAL TRANSPORT; 2.898A {Escherichia coli}
Probab=76.28 E-value=6.5 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... .. + .|++|++||+|+.+
T Consensus 123 ~i~a~~~G~v~~i---------------------------~~-v~~G~~V~~G~~la~i 153 (413)
T 3NE5_C 123 IVQARAAGFIDKV---------------------------YP-LTVGDKVQKGTPLLDL 153 (413)
T ss_dssp EECCSSCEEEEEE---------------------------CS-CCTTCEECTTCEEEEE
T ss_pred EEecCCceEEEEe---------------------------ee-CCCCCEEcCCCeeEEE
No 73
>7OGR_C PHIKZ071,DNA-directed RNA polymerase; RNA polymerase, PhiKZ, non-virion, TRANSCRIPTION; 3.0A {Pseudomonas virus phiKZ}
Probab=74.62 E-value=14 Score=35.55 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred EEEecCeEEEECCCcccC---CccEEEEE----------------------------eCCEEEEEEEecC-CCCC-CCCe
Q FD01845354_014 29 IYAVADGVLVRNPYSFYS---GTSAVEIR----------------------------HGELILRYGEIAN-GSYT-GGSS 75 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~FY~---gT~ai~I~----------------------------H~~~i~RYGEi~~-~~~v-~G~~ 75 (133)
|.|+.||+|+.+ -..|. +...|.+. |..+...|-+-.. ...+ +|++
T Consensus 67 v~a~~~g~V~~v-i~k~~~~~~~~~I~~~~~~~~iy~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~G~~ 145 (700)
T 7OGR_C 67 VRFPEDCRVLHV-LRKYPTGIGKDSIRSNPVTTIIYENYFDKYKTIGVLHVPEYMSHHQDFGYELVKNREVWETIAPNEM 145 (700)
T ss_dssp EECCSSEEEEEE-CCSSCCSSSSSCCSSCCCEEEEEEESSCSSCCEEEEEECSEEEEETTEEEECBCCHHHHTTCCSSCE
T ss_pred eEeCCCeEEEEE-EecCCCCCCCcceEeccceeEEEecccccCCeEEEEEcCCceeecCcceEEeecCcccccccCCCCe
Q ss_pred ecCCCeeEE
Q FD01845354_014 76 VKKGQIIAK 84 (133)
Q Consensus 76 V~~GQ~Ig~ 84 (133)
|++|++|+.
T Consensus 146 i~~G~vla~ 154 (700)
T 7OGR_C 146 FSKDTVIAQ 154 (700)
T ss_dssp ECTTCEESB
T ss_pred eCCCCEEEe
No 74
>1UOU_A THYMIDINE PHOSPHORYLASE; PHOSPHORYLASE, TRANSFERASE, GLYCOSYLTRANSFERASE, CHEMOTAXIS, ANGIOGENESIS; HET: CMU; 2.11A {HOMO SAPIENS} SCOP: d.41.3.1, c.27.1.1, a.46.2.1
Probab=74.12 E-value=2.1 Score=38.38 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CeEEEecCeEEEECCCcccCCccEE---------EEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAV---------EIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai---------~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
.+|.|+.+|.|... ...=-|--+. .|+|+. +++. + .||+|++||+|++|
T Consensus 373 ~~i~a~~~G~v~~i-d~~~ig~~~~~lGa~~~~d~id~~~Gi~l~---------~~~Gd~V~~g~~l~~v 432 (474)
T 1UOU_A 373 EELLAPADGTVELV-RALPLALVLHELGAGRAGEPLRLGVGAELL---------VDVGQRLRRGTPWLRV 432 (474)
T ss_dssp EEEECSSCEEEEEE-CHHHHHHHHHHHHC------CCSSCEEEEC---------SCTTCEECTTCEEEEE
T ss_pred EEEecCCCceEEEe-cHHHHHHHHHHhcCCCCCCCCCcCCEEEEE---------EeCCCcccCCCcEEEE
No 75
>1HCZ_A CYTOCHROME F; ELECTRON TRANSPORT, PHOTOSYNTHESIS, CYTOCHROME B6F COMPLEX, CHLOROPLAST TRANSMEMBRANE; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1, b.84.2.2
Probab=73.37 E-value=11 Score=32.79 Aligned_cols=73 Identities=19% Similarity=0.104 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEE-EeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEI-RHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I-~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.+|---..+|-........|.++|+|... ..=-.|.|.|+| ++.+--.-.-.|.+ ...+ .||.|+.+|+|
T Consensus 151 ~rnrlR~~l~~~l~~~n~~~~~~~~~g~v~~i-~~~~~~~~~~~~~~~~~g~~~~~~ip~g~~l~v~~g~~v~~~~~l 227 (252)
T 1HCZ_A 151 GGNRGRGQIYPDGSKSNNTVYNATAGGIISKI-LRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPL 227 (252)
T ss_dssp EEEESCCSBCTTSCBCSSSCCBCSSCEEEEEE-EECTTSCEEEEEEETTTTEEEEEEECTTCCBCCCTTCEECTTCBS
T ss_pred chhhhhceeccCchhcCCcccccccCceeeeE-EeccCCcEEEEEEeCCCCceEEEEeCCCceeEEcCCCeEEeCCCc
No 76
>PF00529.24 ; CusB_dom_1 ; Cation efflux system protein CusB domain 1
Probab=72.58 E-value=8.8 Score=31.18 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCCCCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYTGGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v~G~~V~~GQ~Ig~v 85 (133)
.|.||.||+|... .... |+.|.+|++|+.+
T Consensus 224 ~i~Ap~~G~V~~~---------------------------~~~~-g~~v~~g~~l~~i 253 (363)
T Q46972_ECOLX/2 224 IIRALSDGKIDSL---------------------------SVTP-GQMVSVGDSLLQI 253 (363)
T ss_pred EEEeCCCceEeee---------------------------eeCC-CCcccCCCeEEEE
No 77
>3CDX_C Succinylglutamatedesuccinylase/aspartoacylase; STRUCTURAL GENOMICS, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, Hydrolase; 2.1A {Rhodobacter sphaeroides 2.4.1}
Probab=69.68 E-value=13 Score=31.66 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
..+.|+.+|.+... + .|+.|+|||+||++
T Consensus 268 ~~~~a~~~g~~~~~------------------------------~~~g~~V~kGe~l~~i 297 (354)
T 3CDX_C 268 AYVMAPRTGLFEPT------------------------------HYVGEEVRTGETAGWI 297 (354)
T ss_dssp GEEECSSCEEEEES------------------------------CCTTCEECTTSEEEEE
T ss_pred cEEECCCCceEEEC------------------------------CCCCCEeCCCCeEEEE
No 78
>3FMC_D Putative succinylglutamate desuccinylase / aspartoacylase; PUTATIVE SUCCINYLGLUTAMATE DESUCCINYLASE / ASPARTOACYLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE; HET: SO4, MSE, GOL; 1.8A {Shewanella amazonensis}
Probab=69.66 E-value=11 Score=32.21 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|..... + .|+.|++||+||.+
T Consensus 292 ~v~a~~~G~~~~~------------------------------~~~g~~V~~G~~ig~i 320 (368)
T 3FMC_D 292 KFHAPKAGMVEYL------------------------------GKVGVPMKATDPLVNL 320 (368)
T ss_dssp EEECSSCEEEEEC------------------------------SCTTCCBCTTSEEEEE
T ss_pred EEECCCCEEEEEe------------------------------cCCCCcccCCCeEEEE
No 79
>8A1W_A Na(+)-translocating NADH-quinone reductase subunit A; quinone, MEMBRANE PROTEIN; HET: UQ1, FMN, 3PE, FAD, LMT, RBF; 2.56A {Vibrio cholerae}
Probab=69.48 E-value=6 Score=35.37 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred C-CCCeecCCCeeEE
Q FD01845354_014 71 T-GGSSVKKGQIIAK 84 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~ 84 (133)
| +||+|++||+|++
T Consensus 67 V~~Gd~V~~Gq~i~~ 81 (468)
T 8A1W_A 67 VRVGDEVKKAQILFE 81 (468)
T ss_pred cCCCCEEcCCCEEEE
No 80
>2XHC_A TRANSCRIPTION ANTITERMINATION PROTEIN NUSG; TRANSCRIPTION; 2.45A {THERMOTOGA MARITIMA}
Probab=69.07 E-value=25 Score=30.00 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred eccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-E-EEEEEEecC--CCC--C-CCCeecCCCeeE
Q FD01845354_014 20 DLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-L-ILRYGEIAN--GSY--T-GGSSVKKGQIIA 83 (133)
Q Consensus 20 DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~-i~RYGEi~~--~~~--v-~G~~V~~GQ~Ig 83 (133)
|+.+.... ++|..||+|. +..+...|.|.... - ...| .+.. ... + .|+.|++||+|+
T Consensus 75 ~~la~~~~-i~s~~~G~v~-----~~~~~~~i~i~~~~~~~~~~y-~i~~~~~~~~~v~~g~~V~~G~~L~ 138 (352)
T 2XHC_A 75 DLIAEEPP-IYARRSGVIV-----DVKNVRKIVVETIDRKYTKTY-YIPESAGIEPGLRVGTKVKQGLPLS 138 (352)
T ss_dssp CEEEEECC-EECSSCEEEE-----EEEEEEEEEEECTTCSSEEEE-EEEGGGCBCTTCCTTCEECTTCBSB
T ss_pred CEEEecCC-EeeccccEEE-----EeCCceEEEEEecCCCeeEEE-EcCCCCeeecCCCCCCEECCCCccc
No 81
>7S00_E DNA-directed RNA polymerase; DNA-dependent multisubunit RNA polymerase, deoxyuridine, template strand promoter, RNAP, TRANSCRIPTION; 3.3A {Bacillus phage AR9}
Probab=68.77 E-value=26 Score=33.39 Aligned_cols=55 Identities=11% Similarity=-0.052 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred EEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC--CCC--------------C-CCCeecCCCeeEE
Q FD01845354_014 29 IYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN--GSY--------------T-GGSSVKKGQIIAK 84 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~--~~~--------------v-~G~~V~~GQ~Ig~ 84 (133)
|.|..||+|+.. -..-.-++.+.+...+ -....-+..+ ... + .|++|++||+|+.
T Consensus 74 ~~a~~~g~V~~v-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vk~G~~v~kg~ila~ 146 (665)
T 7S00_E 74 RKANSNYKVIEK-IYKNDYNYVLIVQDQETGEYTLFERAECEFLTEHYGFQWDNDKIDSLKKDDTIEKDTVLYK 146 (665)
T ss_dssp EECSSCEEEEEE-EESSSSCEEEEEEETTTCCEEEEEECSEEEEETTEEEEEECHHHHHCCTTCEECTTCEEEE
T ss_pred EEcCCCcEEEEE-eecCCCeEEEEEEeCCCCceeeEEeeccceechhcccccccccccccCCCCeecCCCEEEe
No 82
>5XU0_C Membrane-fusion protein; membrane fusion protein, channel, TRANSPORT PROTEIN; HET: MSE; 2.95A {Streptococcus pneumoniae}
Probab=68.19 E-value=7.7 Score=30.80 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++||+|+++
T Consensus 31 v~~G~~V~~G~~L~~l 46 (273)
T 5XU0_C 31 VSVGDKVSEGQALVKY 46 (273)
T ss_dssp CCSSCEECSSCEEEEE
T ss_pred cCCCCEEcCCCeeEEE
No 83
>3T53_C Cation efflux system protein CusB; transmembrane helix, heavy metal efflux, TRANSPORT PROTEIN; 3.37A {Escherichia coli}
Probab=67.24 E-value=14 Score=30.53 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
..|.||.+|+|... . + .|+.|.+|++|+++
T Consensus 131 ~~i~Ap~~G~v~~~---------------------------~--~~~g~~V~~g~~l~~i 161 (336)
T 3T53_C 131 FTLKAPIDGVITAF---------------------------D--LRAGMNIAKDNVVAKI 161 (336)
T ss_dssp EEEECSSSEEEEEC---------------------------C--CCTTCEECSSCEEEEE
T ss_pred cEEECCCCeEEEEE---------------------------e--cCCCCeecCCCeEEEE
No 84
>7B9K_T Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Multienzyme complexes, oxoacid dehydrogenase complexes, lipoic acid, dihydrolipoyllysine, TRANSFERASE; HET: LA2; 3.16A {Escherichia coli (strain K12)}
Probab=66.50 E-value=12 Score=33.98 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
+|.|+.+|+|... . .||.|++||+|+.+
T Consensus 45 ~i~a~~~G~v~~v------------------------------~v~~G~~V~~G~~L~~l 74 (630)
T 7B9K_T 45 EVPSPQAGIVKEI------------------------------KVSVGDKTQTGALIMIF 74 (630)
T ss_dssp ------------------------------------------------------------
T ss_pred EEeCCCCeEEEEE------------------------------EecCCCEeCCCCEEEEE
No 85
>6RQF_K Cytochrome f; Plastoquinol-plastocyanin oxido-reductase Cytochrome b6f Photosynthesis Electron transport, PHOTOSYNTHESIS; HET: PGV, PL9, 6PL, LMG, CLA, HEM, SQD, BCR, HEC; 3.58A {Spinacia oleracea}
Probab=65.90 E-value=16 Score=32.36 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEE-EeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEI-RHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I-~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.+|-.-..+|-.......-|.++|+|... ..=-.|.|.|+| ++.+--.-.-.|.+ ...+ .||.|+.+|+|
T Consensus 151 ~rnrlR~~l~~~l~~~~~~~~~~~~~g~i~~i-~~~~~~~~~i~~~~~~~g~~~~~~ip~g~~l~v~~g~~v~~~~~l 227 (285)
T 6RQF_K 151 GGNRGRGQIYPDGSKSNNTVYNSTATGIVKKI-VRKEKGGYEINIADASDGREVVDIIPRGPELLVSEGESIKLDQPL 227 (285)
T ss_dssp CCEESCCSBCTTSCBCSSSCCCCSSCEEEEEE-EECTTSCEEEEECCSSSCSCEEEEECSSCCBCCCTTCEECTTCCS
T ss_pred chhhhhcchhhchhhccCCcccccccceeeEE-EEcCCCcEEEEEEeCCCCceEEEEeCCCCeeEEcCCCeEecCCCc
No 86
>PF05896.15 ; NQRA ; Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
Probab=65.65 E-value=8.4 Score=31.04 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred C-CCCeecCCCeeEE
Q FD01845354_014 71 T-GGSSVKKGQIIAK 84 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~ 84 (133)
+ .||+|++||+|+.
T Consensus 46 V~~Gd~V~~Gq~l~~ 60 (258)
T Q604Z5_METCA/2 46 VAEGDRVKLGSVLFT 60 (258)
T ss_pred cCCCCEEcCCCEEEE
No 87
>1CI3_M PROTEIN (CYTOCHROME F); ELECTRON TRANSFER PROTEIN, COMPLEX SUBUNIT, ELECTRON TRANSPORT; HET: HEC; 1.9A {Phormidium laminosum} SCOP: b.2.6.1, b.84.2.2
Probab=65.07 E-value=31 Score=30.39 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CCCCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 7 RAPRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 7 Ga~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
|..|-.|.+|-=-++|. .+..-|.+.|+|... ..==.|.|.|+|+..+ -.+ .-.|-+ ...+ .|+.|+.+|+|
T Consensus 152 grnrgRgqLyp~gs~sn--n~~~~as~~G~v~~i-~~~~~gg~~iti~~~~g~~v-~~~ip~g~~l~v~~G~~v~~~q~l 227 (249)
T 1CI3_M 152 GANRGRGQIYPTGEKSN--NAVYNASAAGVITAI-AKADDGSAEVKIRTEDGTTI-VDKIPAGPELIVSEGEEVAAGAAL 227 (249)
T ss_dssp EEEESCCSBCTTSCBCS--SSCCBCSSCEEEEEE-EECTTSCEEEEEECTTSCEE-EEEECSSSCBCCCTTCEECTTCBS
T ss_pred cccccceeeccCccccc--ccccccccCceeeee-EeCCCCCeEEEEEcCCCCeE-EEEeCCCCeeEeCCCCeEeCCCCc
No 88
>2F1M_B Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, TRANSPORT PROTEIN; HET: MSE; 2.71A {Escherichia coli} SCOP: f.46.1.0
Probab=64.80 E-value=28 Score=27.34 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCe--eEEEEEcCCCCcEEEEEEe
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQI--IAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~--Ig~vG~l~~~~~MLHfE~Y 100 (133)
..|.||.||+|... .+ .|+.|.+|++ |+.+.. ...+.+++.
T Consensus 131 ~~i~ap~~G~V~~~-----------------------------~~~~G~~v~~g~~~~l~~i~~----~~~~~v~~~ 174 (277)
T 2F1M_B 131 TKVTSPISGRIGKS-----------------------------NVTEGALVQNGQATALATVQQ----LDPIYVDVT 174 (277)
T ss_dssp TEECCSSCEEECCC-----------------------------SSCTTCEECTTCSSCSEEEEE----CSEEEEEEE
T ss_pred CEEECCCCeEEEee-----------------------------ecCCCCeecCCCceEEEEecc----CCcEEEEEE
No 89
>1YW4_A Succinylglutamate desuccinylase; alpha-beta protein, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, HYDROLASE; HET: MSE; 2.0A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=64.79 E-value=7.7 Score=33.03 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCC-CCCeecCCCeeEEEE
Q FD01845354_014 69 SYT-GGSSVKKGQIIAKVG 86 (133)
Q Consensus 69 ~~v-~G~~V~~GQ~Ig~vG 86 (133)
..+ .|+.|++||+||+++
T Consensus 277 ~~~~~g~~v~kG~~ig~~~ 295 (341)
T 1YW4_A 277 DSVENFTLLPDGMLIAEDG 295 (341)
T ss_dssp TTCCBTEECCSSCCCC---
T ss_pred CCcccceeeCCCcEEEEcC
No 90
>7ZYV_C Cytochrome f; cytochrome, Spinacia oleracea, plastoquinones, cryo-EM, PHOTOSYNTHESIS; HET: CLA, UMQ, SQD, BCR, HEC, HEM, PL9; 2.13A {Spinacia oleracea}
Probab=64.61 E-value=24 Score=31.97 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEE-EeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEI-RHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I-~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.+|---..++-........|...|+|... ..=-.|.|.|+| ++.+--.-.-.|.+ ...+ .||.|+.+|+|
T Consensus 186 ~Rn~lRg~L~~~~~~~n~~~~~~~~~g~i~~i-~~~~~~~~~i~i~~~~~g~~~~~~ip~g~~l~v~~g~~v~~~q~l 262 (320)
T 7ZYV_C 186 GGNRGRGQIYPDGSKSNNTVYNSTATGIVKKI-VRKEKGGYEINIADASDGREVVDIIPRGPELLVSEGESIKLDQPL 262 (320)
T ss_dssp EEEESCCSBCSSSCBCSSSCCBCSSCEEEEEE-EECTTSCEEEEEC-------CEEEECSSCCBCCCSSSEECSSCBC
T ss_pred cccccccccccchhhcCCCccccccCceeeeE-EEccCCcEEEEEEeCCCCceEEEEeCCCCeeEecCCCeEecCCCc
No 91
>5XU0_C Membrane-fusion protein; membrane fusion protein, channel, TRANSPORT PROTEIN; HET: MSE; 2.95A {Streptococcus pneumoniae}
Probab=64.60 E-value=31 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecC-CCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKK-GQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~-GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
...|.||.||+|... . .|+.|.+ |+.|+.+.. ..-++++.+
T Consensus 139 ~~~i~Ap~~G~V~~~------------------------------~~~~g~~v~~~g~~l~~i~~----~~~~~v~~~ 182 (273)
T 5XU0_C 139 AMTVLSTLEGTVVEV------------------------------NSNVSKSPTGASQVMVHIVS----NENLQVKGE 182 (273)
T ss_dssp TTEEECSSCEEEEEE------------------------------CCCCCSSCCSSCCEEEEEEC----SSSCEEEEE
T ss_pred hCEEEeCCceEEEEE------------------------------ccccCCCCCCCcceeEEEec----CCceEEEEE
No 92
>PF12700.11 ; HlyD_2 ; HlyD family secretion protein
Probab=64.35 E-value=26 Score=29.41 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eEEEecCeEEE-----------------------------ECCCcccCCccEEEEEeCCEEEEEEEecCCCCCCCCeecC
Q FD01845354_014 28 PIYAVADGVLV-----------------------------RNPYSFYSGTSAVEIRHGELILRYGEIANGSYTGGSSVKK 78 (133)
Q Consensus 28 ~V~Ai~dG~V~-----------------------------~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v~G~~V~~ 78 (133)
.|.||.||+|. .. ... |+.|.+
T Consensus 203 ~i~Ap~~G~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~--G~~v~~ 253 (420)
T A0A140L5Y8_9CL 203 TVVSPESGMISYYIDGYEEILNPMNMVAIQFEELKQRRSQVM---------------------------DLR--REKVIS 253 (420)
T ss_pred eeecCCCceEEEEEcCCCccCChhhhhcCCHHHHHHHHHhcc---------------------------ccc--hhheeC
Q ss_pred CCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 79 GQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 79 GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
||+|+++.. ..-++++++
T Consensus 254 g~~l~~i~~----~~~~~v~~~ 271 (420)
T A0A140L5Y8_9CL 254 GQPLFKVVD----NNVWYLVAW 271 (420)
T ss_pred CCeeEEEEc----CCeEEEEEE
No 93
>4U9O_A Na(+)-translocating NADH-quinone reductase subunit A; sodium translocation, Rossmann fold, oxidoreductase; 1.6A {Vibrio cholerae}
Probab=64.00 E-value=9.2 Score=32.82 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred C-CCCeecCCCeeEE
Q FD01845354_014 71 T-GGSSVKKGQIIAK 84 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~ 84 (133)
| .||+|++||+|++
T Consensus 48 V~~Gd~V~~Gq~ia~ 62 (360)
T 4U9O_A 48 VRVGDEVKKAQILFE 62 (360)
T ss_dssp CCTTCEECBTCEEEE
T ss_pred cCCCCEEcCCCEEEE
No 94
>4L8J_A Putative efflux transporter; HlyD family secretion protein, PF00529 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure; HET: GOL, PEG, MSE; 2.06A {Bacteroides eggerthii}
Probab=63.89 E-value=37 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEE
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEI 99 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~ 99 (133)
...|.||.||+|... . .|+.|.+|++|+.+..... ..+.+.+
T Consensus 128 ~~~i~ap~~G~v~~~------------------------------~~~~g~~v~~g~~l~~i~~~~~--~~v~~~v 171 (328)
T 4L8J_A 128 DTKLLAPFDGSIETR------------------------------LVENYQRVNSGEGIVRLVNTRK--LRIKFTV 171 (328)
T ss_dssp TTEEECSSSEEEEEE------------------------------CSCTTCEECTTCEEEEEEECSC--CEEEEEE
T ss_pred ccEEECCCCeEEEEE------------------------------EcCCCCcccCCCeeEEEEeCCc--eEEEEEe
No 95
>7ZC6_C RnfC; Rnf, flavin, iron-sulfur cluster, sodium ion translocation, anaerobic energy metabolism, oxidoreductase, electron transport, redox-coupled sodium pump; HET: FMN, SF4, RBF; 4.27A {Clostridium tetanomorphum}
Probab=63.45 E-value=8.9 Score=33.65 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred C-CCCeecCCCeeEE
Q FD01845354_014 71 T-GGSSVKKGQIIAK 84 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~ 84 (133)
| .||+|++||+||.
T Consensus 49 V~~Gd~V~~Gq~i~~ 63 (435)
T 7ZC6_C 49 VKKGDRVLVGQKIGE 63 (435)
T ss_dssp CCTTCEECBTCBCCC
T ss_pred ecCCCEEeCCCEEeE
No 96
>7R0W_C Cytochrome f; Complex, cytochrome, membrane protein, electron transport, PHOTOSYNTHESIS; HET: 2WA, PGV, PL9, 6PL, CLA, LMG, HEM, SQD, ECH, LFA, HEC;{Synechocystis sp. PCC 6803}
Probab=63.45 E-value=19 Score=32.93 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC---CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN---GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~---~~~v-~G~~V~~GQ~I 82 (133)
.|+.||---..++-...+.+.-|...|+|... ..-=.|.|.|+|++.+ - +=|.-| ...+ .||.|+.+|+|
T Consensus 196 grnrgRgqiyp~g~~snn~~~~~~~~g~v~~I-~~~~~~~~~iti~~~~g~---~~~~ip~g~~l~v~~g~~v~~~q~L 270 (328)
T 7R0W_C 196 GANRGRGQIYPTGLLSNNNAFKAPNAGTISEV-NALEAGGYQLILTTADGT---ETVDIPAGPELIVSAGQTVEAGEFL 270 (328)
T ss_dssp EEECSCCSBCTTSCBCSSSCCBCSSSCBCCSC-CCCSSSCEEEC-----CC---CCEEECSSSCBSCCSSCBCCTTCBC
T ss_pred cccchhhcchhHhhhcCCCCccCCCCceeeee-eecccCceEEEEEcCCCc---EEEEeCCCCeEEecCCCeEecCccc
No 97
>3NH4_A Aspartoacylase-2; Mercapturates, HYDROLASE; 2.0A {Mus musculus} SCOP: c.56.5.0
Probab=61.90 E-value=10 Score=31.46 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred EEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 63 GEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 63 GEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
|.+.+.... .|+.|++||+||++
T Consensus 249 G~~~~~~~~~~g~~V~~G~~lg~i 272 (327)
T 3NH4_A 249 GTVHPQLQDHDFEPLRPGEPIFKL 272 (327)
T ss_dssp EEECTTTTTCTTSCBCTTSEEEEE
T ss_pred eeecccccCCCCCcCCCCCceEeC
No 98
>8AHX_C Ion-translocating oxidoreductase complex subunit C; metalloprotein, flavoprotein, electron transfer and Na+/H+ translocation, MEMBRANE PROTEIN; HET: LMT, FMN, SF4, RBF; 3.11A {Azotobacter vinelandii DJ}
Probab=61.59 E-value=7.3 Score=35.02 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred C-CCCeecCCCeeEE
Q FD01845354_014 71 T-GGSSVKKGQIIAK 84 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~ 84 (133)
| .||+|++||+|++
T Consensus 51 V~~Gd~V~~Gq~i~~ 65 (496)
T 8AHX_C 51 VAVGDKVLKGQLLAF 65 (496)
T ss_dssp CCTTCEECBTCEEEE
T ss_pred ecCCCEEeCCCcccc
No 99
>6VEJ_Q Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein,Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein; RND transporter, Pseudomonas aeruginosa, transmembrane, TriABC, TriC, PMF, cryoEM, TRANSPORT PROTEIN; HET: PLM, LMU, E2V; 4.5A {Pseudomonas aeruginosa}
Probab=61.53 E-value=28 Score=32.06 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEI 99 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~ 99 (133)
..|.||.||+|... . .|+.|.+|++|+++..... ..+.+++
T Consensus 504 ~~i~aP~~G~v~~~------------------------------~~~~G~~v~~g~~l~~i~~~~~--~~v~~~v 546 (695)
T 6VEJ_Q 504 TRLVTDFDGVITTW------------------------------HAEAGQVVSAGQAVVTLARPEV--REAVFDL 546 (695)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEecCCCeEEEeE------------------------------ecCCCCcccCCCeEEEEeCCCc--eEEEEEC
No 100
>7SFR_W 50S ribosomal protein L27; unmethylated, Mtb ribosome, drug discovery, SEQ-9, Structural Genomics, TB Structural Genomics Consortium, TBSGC, RIBOSOME-ANTIBIOTIC complex; HET: G7M, 5MU, 6MZ, 2MG, 5MC, WDP, 4OC, MA6, OMC, OMG, UR3, MG; 2.6A {Mycobacterium tuberculosis}
Probab=61.51 E-value=14 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|+|.-..--....++|++||+|
T Consensus 39 rQ~g~~~~pG~nv~~g~d~tL~A~~~G~V 67 (86)
T 7SFR_W 39 RQRGTKFHPGVNVGRGGDDTLFAKTAGAV 67 (86)
T ss_pred eccCCcccCCCCcccCCCCcEEeCCCEEE
No 101
>5ZX3_C DNA-directed RNA polymerase subunit beta; Mycobacterium tuberculosis, RNA polymerase, holoenzyme, sigH, TRANSCRIPTION; 2.751A {Mycobacterium tuberculosis H37Rv}
Probab=61.42 E-value=31 Score=35.19 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCeEEEecCeEEEECCCcc----cCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecCCCeeEE
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSF----YSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~F----Y~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~ 84 (133)
+..+.|+.+|+|+.+...+ |.......+.... +-..++-..+ ...+ .|++|++||+|+.
T Consensus 635 ~~~~~a~~~g~V~~v~~~~i~v~~~~g~~~~~~l~~~~~~~~~~~~~~~p~v~~g~~v~~G~ila~ 700 (1174)
T 5ZX3_C 635 GDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIAD 700 (1174)
T ss_dssp SCSEECSSCEEEEEECSSEEEEEETTSCEEEEECCCSEECTTSBEECCEECCCTTCEECTTCEEEE
T ss_pred CCeEEeCcCcEEEEEcCCeEEEEcCCCceEEEEeeccccCCcCcccccCCccCCCCeEcCCCeeee
No 102
>2JXM_B Cytochrome f; Copper, Electron transport, Metal-binding, Transport; HET: CU, HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=61.02 E-value=17 Score=31.60 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.+|---.-+|-...+...-|.+.|+|.+. ..-=.|. .|+|++.+-=.-.-.|-+ ...+ .|+.|+.+|+|
T Consensus 153 ~rn~~Rg~l~~~~~~~~~~~~~~~~~g~v~~i-~~~~~~~-~~~i~~~~g~~~~~~ip~g~~l~v~~g~~v~~~q~l 227 (249)
T 2JXM_B 153 GGNRGRGQVYPTGELSNNNAFSASIAGTIAAI-EDNGFGF-DVTIQPEDGDAVVTSILPGPELIVAVGDTVEAGQLL 227 (249)
T ss_dssp EEEESCCSBCTTSCBCSSSCCBCSSCEEEEEE-CCSSSEE-EEEEECTTSCCEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred cHHHHHHhHHhcchhccCCCcccccceeEEee-eeCCCCc-eEEEeCCCCCeEEEEeCCCCeeEeCCCCEEeCCCcc
No 103
>6VEJ_Q Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein,Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein; RND transporter, Pseudomonas aeruginosa, transmembrane, TriABC, TriC, PMF, cryoEM, TRANSPORT PROTEIN; HET: PLM, LMU, E2V; 4.5A {Pseudomonas aeruginosa}
Probab=59.81 E-value=18 Score=33.18 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
..+.++.+|+|... . .|+.|++||+|+.+
T Consensus 39 ~~i~~~~~G~v~~~------------------------------~v~~G~~V~~G~~L~~l 69 (695)
T 6VEJ_Q 39 ADQSFRVGGKIVER------------------------------LVDVGDHVAAGQVLARL 69 (695)
T ss_dssp -------------------------------------------------------------
T ss_pred eeecceeceEEEEE------------------------------EcCCCCeecCCCEEEEE
No 104
>PF21668.1 ; RPOC_hybrid ; DNA-directed RNA polymerase subunit beta', hybrid domain
Probab=57.59 E-value=66 Score=25.59 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=0.0 Template_Neff=2.600
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEE-----eCC--------EEEEEEEecC-CCCC-CCCeecCCCeeEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIR-----HGE--------LILRYGEIAN-GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~-----H~~--------~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~ 84 (133)
.|-||.+|+|--. .+=.|.--++|+ -+. .+.||===.. ...+ .|..|.+|++||+
T Consensus 9 ~i~Ap~~Gvv~l~--elgEdsvl~~lr~~dpe~de~~~~~~~~V~Ar~yvP~Gm~v~V~~GEiVeaG~~LA~ 78 (112)
T A0A418V6H3_9DE 9 QLTAPVDGVVNVL--EMGEDSVMLEIRERAEESDEEDAAPFGDVISRVYVPHGMDVNVVYGEIVAAGDVLAT 78 (112)
T ss_pred eEecCCCcEEEEE--EecCCeEEEEEeeccccCCccccccccceEEEEEecCCceeEEeeceEEeCCceeee
No 105
>4DK1_A Putative MacA, Multidrug resistance protein mexA; alpha-hairpin, lipoyl, beta-barrel domains, PERIPLASMIC PROTEIN, MEMBRANE PROTEIN; HET: MSE; 3.499A {Aggregatibacter actinomycetemcomitans}
Probab=56.21 E-value=42 Score=27.46 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
..|.||.||+|... . .|+.|.+||.++.+..+.. ...+.++++
T Consensus 127 ~~i~ap~~G~v~~~------------------------------~~~~g~~v~~g~~~~~l~~i~~-~~~~~v~~~ 171 (341)
T 4DK1_A 127 TKITSPIDGTVIST------------------------------PVSEGQTVNSNQTTPTIIKVAD-LSKMRIKPE 171 (341)
T ss_dssp HSCCCSSSEEECCC------------------------------CCCTTCCCCCSSSCCCCEEEEC-CSSEEEEEC
T ss_pred CEEEcCCCeEEEEe------------------------------ecCCCCccCCCCCCCeEEEeec-CCceEEEEe
No 106
>PF01016.23 ; Ribosomal_L27 ; Ribosomal L27 protein
Probab=55.84 E-value=25 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLV 38 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~ 38 (133)
|..| +.|+|--..-.....++|++||+|.
T Consensus 38 ~Q~g~~~~PG~nv~~g~d~tl~a~~~G~V~ 67 (79)
T S0ETL8_CHTCT/2 38 RQRGTKLHPGKNVGMGSDYTLFALTDGIVK 67 (79)
T ss_pred eccCCccCCCCCccCCCCCcEEeCCCEEEE
No 107
>7S0S_Y 50S ribosomal protein L27; Ribosome, Methyltransferase, rRNA modification, 50S, TRANSFERASE; HET: AI5, MG; 3.05A {Mycolicibacterium smegmatis}
Probab=55.57 E-value=24 Score=24.96 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLV 38 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~ 38 (133)
|..| +.|+|--.+--....++|+.||+|.
T Consensus 32 rQ~g~~~~pG~nv~~g~d~tl~A~~~G~V~ 61 (79)
T 7S0S_Y 32 RQRGTHFHPGVNVGRGGDDTLFALAPGAVE 61 (79)
T ss_dssp ECSSCSSEECTTEEECTTSCEEESSSEEEE
T ss_pred eccCCcccCCCCCcccCCCeEEecCCEEEE
No 108
>4Y4O_20 50S ribosomal protein L27; Ribosome, rRNA modofications, pseudouridine, rRNA methylation, ribosomal protein post-translational modifications, iron-sulfur cluster, beta-thio-aspartate; HET: 7MG, OMG, 2MU, UR3, ARG, MPD, SF4, PSU, MG, MA6, 2MG, 2MA, 5MC, 0TD, ZN, M2G, 5MU, 4OC; 2.3A {Thermus thermophilus HB8}
Probab=55.19 E-value=21 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|.|.-.+--....++|++||+|
T Consensus 39 ~Q~g~~~~pG~nv~~g~d~tl~A~~~G~V 67 (85)
T 4Y4O_20 39 RQRGTRFKPGKNVGMGRDFTLFALVDGVV 67 (85)
T ss_pred eccCCcccCCCCcccCCCCeEEeCcCeEE
No 109
>4H44_C Apocytochrome f; Alpha helix, beta-sheet, Plastoquinol-plastocyanin oxidoreductase, Plastocyanin, Thylakoid membranes, PHOTOSYNTHESIS; HET: UMQ, 7PH, OCT, MYS, 8K6, CLA, HEM, SQD, BCR, OPC; 2.7A {Nostoc}
Probab=54.13 E-value=36 Score=30.63 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcc-cCC--ccEEEEEeCCEEEEEEEecC--CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSF-YSG--TSAVEIRHGELILRYGEIAN--GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~F-Y~g--T~ai~I~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~I 82 (133)
.|+.||---.-++-.......-|...|+|......= |.| .|.|+|++.+--.-.-.|-+ ...+ .|+.|+.+|+|
T Consensus 152 ~rnrgRGql~p~g~~snn~~~~a~~~g~i~~i~~~~~~~g~~~~~i~i~~~~g~~v~~~iP~gp~l~v~~g~~v~~~q~l 231 (289)
T 4H44_C 152 GGNRGRGQVYPTGEKSNNNLYSAAATGTISKIAKQEGEDGSVKYLVDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDAL 231 (289)
T ss_dssp EEEESCCSBCTTSCBCSSSCCCCSSSEECCCCBCCCCSSCSCEEEECCCSSCSCCCCEEEESSSCCCCCSCCEECTTCCS
T ss_pred ccchhhhchhhhhhhccCCccccccccceeeeeeccCCCCCeeEEEEEEcCCCcEEEEEeCCCCeeEecCCCeEecCCCc
No 110
>6VEJ_Q Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein,Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein; RND transporter, Pseudomonas aeruginosa, transmembrane, TriABC, TriC, PMF, cryoEM, TRANSPORT PROTEIN; HET: PLM, LMU, E2V; 4.5A {Pseudomonas aeruginosa}
Probab=53.70 E-value=31 Score=31.71 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+++
T Consensus 397 ~i~a~~~g~v~~~------------------------------~~~~G~~V~~G~~l~~l 426 (695)
T 6VEJ_Q 397 VLGFRTNGRIASR------------------------------LFDVGDFVGKGALLATL 426 (695)
T ss_dssp ------------------------------------------------------------
T ss_pred EEeeecCcEEEEE------------------------------EccCCCeecCCCEEEEe
No 111
>7ZXY_K Cytochrome f; cytochrome bc complexes, electron transfer, cytochrome b6f, photosynthesis, cyanobacteria, OXIDOREDUCTASE; HET: PGV, CLA, HEM, ECH, LFA, HEC;{Synechocystis sp. PCC 6803}
Probab=53.69 E-value=28 Score=31.12 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC---CCCC-CCCeecCCCee
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN---GSYT-GGSSVKKGQII 82 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~---~~~v-~G~~V~~GQ~I 82 (133)
.|+.||---.-++-...+...-|..+|+|... ..==.|.|.|+|++.+ - .=|.-| ...+ .|+.|+.+|+|
T Consensus 152 ~rnrgRGqi~p~g~~snn~~~~~~~~g~v~~i-~~~~~~~~~i~i~~~~g~---~~~~ip~g~~l~v~~g~~v~~~q~l 226 (284)
T 7ZXY_K 152 GANRGRGQIYPTGLLSNNNAFKAPNAGTISEV-NALEAGGYQLILTTADGT---ETVDIPAGPELIVSAGQTVEAGEFL 226 (284)
T ss_dssp EEECSCCSBCTTSCBCSSSCCBCSSCEECCCC-CBCSSSCEEEC-----CC---CCEEECSSSCBCSCTTSEECTTCBS
T ss_pred cccchhhhhHHHHhhccCCCccCCCCceeeee-eecccCceEEEEecCCCc---EEEEeCCCCeEEecCCCeEecCccc
No 112
>2Q4Z_A Aspartoacylase; Ensemble Refinement, Refinement Methodology Development, Aspartoacylase family, Aminoacylase-2, ACY-2, ACY2_RAT, Structural Genomics, Protein Structure Initiative, PSI; HET: SO4, MSE, ZN; 1.8A {Rattus norvegicus} SCOP: c.56.5.7
Probab=53.01 E-value=14 Score=30.48 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CC-CCCeecCCCeeEEE
Q FD01845354_014 70 YT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 70 ~v-~G~~V~~GQ~Ig~v 85 (133)
.. .|+.|++||+||++
T Consensus 247 ~~~~~~~V~~G~~ig~i 263 (312)
T 2Q4Z_A 247 QDQDWKPLHPGDPVFVS 263 (312)
T ss_dssp TTCTTCCBCTTSEEEEC
T ss_pred cCCCCccCCCCCeeEEC
No 113
>6VEJ_Q Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein,Probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein; RND transporter, Pseudomonas aeruginosa, transmembrane, TriABC, TriC, PMF, cryoEM, TRANSPORT PROTEIN; HET: PLM, LMU, E2V; 4.5A {Pseudomonas aeruginosa}
Probab=52.20 E-value=63 Score=29.84 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
+.|.||.||+|... .+ .|+.|..|++|+.+.. ...+.++++
T Consensus 147 ~~i~Ap~~G~v~~~-----------------------------~~~~G~~v~~g~~l~~i~~----~~~~~v~~~ 188 (695)
T 6VEJ_Q 147 TELRASDAGVITAR-----------------------------QAEVGQVVQATVPIFTLAR----DGERDAVFN 188 (695)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cEEEcCCCcEEEEe-----------------------------ecCCCCeeccCCeeEEEec----CCeEEEEEE
No 114
>8B0X_v 50S ribosomal protein L27; 70S, bacterial, translation, high-resolution, RIBOSOME; HET: G7M, 3TD, H2U, K, 5MU, D2T, 2MG, 5MC, 2MA, 4OC, 6MZ, OMU, MA6, OMC, PSU, OMG, MEQ, 1MG, 4D4, UR3, MG; 1.55A {Escherichia coli B}
Probab=51.90 E-value=24 Score=25.19 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|.|--.+--....++|++||+|
T Consensus 39 ~Q~g~~~~PG~nv~~g~~~tL~A~~~G~V 67 (85)
T 8B0X_v 39 RQRGTKFHAGANVGCGRDHTLFAKADGKV 67 (85)
T ss_pred eecCCcccCCCCccccCCCeEEeCcCeEE
No 115
>8A57_Z 50S ribosomal protein L27; Ribosome, Listeria monocytogenes, HflXr, 50S, antibiotic resistance; HET: SPD, GNP, MG, PUT; 2.3A {Listeria monocytogenes EGD-e}
Probab=51.88 E-value=24 Score=25.91 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|.|.-.+--....++|+.||+|
T Consensus 47 rQ~g~~~~PG~nV~~g~d~tL~A~~~G~V 75 (96)
T 8A57_Z 47 RQRGTKIYPGTNVGRGGDDTLFAKTDGVV 75 (96)
T ss_dssp ECSSCSSEECTTEEECTTSCEEESSSEEE
T ss_pred eccCCeecCCCCcccCCCCcEEeCCCeEE
No 116
>1VF7_H Multidrug resistance protein mexA; alpha hairpin, beta barrel, MEMBRANE PROTEIN; 2.4A {Pseudomonas aeruginosa} SCOP: f.46.1.1
Probab=50.80 E-value=68 Score=26.80 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCe--eEEEEEcCCCCcEEEEEEe
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQI--IAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~--Ig~vG~l~~~~~MLHfE~Y 100 (133)
..|.||.||+|... . .|+.|.+||. +..+.. ..-+.++++
T Consensus 138 ~~i~ap~~G~V~~~------------------------------~~~~G~~v~~g~~~~~~~i~~----~~~~~v~~~ 181 (369)
T 1VF7_H 138 TKVLSPISGRIGRS------------------------------AVTEGALVTNGQANAMATVQQ----LDPIYVDVT 181 (369)
T ss_dssp TEEECSSSEEECCC------------------------------SSCTTCEECTTCSSCSEEEEE----EEEEEEEEE
T ss_pred cEEeCCCCeEEEee------------------------------eecCCceecCCCCcceEEEee----cceEEEEec
No 117
>8FN2_Y 50S ribosomal protein L27; hibernating ribosome, bacterial, pathogen, 50S, translation, RIBOSOME; 3.4A {Borreliella burgdorferi B31}
Probab=50.76 E-value=31 Score=24.16 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLV 38 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~ 38 (133)
|..| +.|+|--.+.-....++|.+||+|.
T Consensus 32 ~Q~g~~~~pG~nv~~g~d~tL~A~~~G~V~ 61 (74)
T 8FN2_Y 32 RQRGTKFHKGKNVGLGRDYTIFALSSGKVE 61 (74)
T ss_dssp ECSSCSEEECTTEEECTTCCEEESSSEEEE
T ss_pred eccCCceeCCCccccCCCCeEEeCCCEEEE
No 118
>2FTC_O Mitochondrial 39S ribosomal protein L27; MITOCHONDRIAL RIBOSOME, LARGE RIBOSOMAL SUBUNIT, RIBOSOMAL RNA, RIBOSOME; 12.1A {Bos taurus}
Probab=50.69 E-value=23 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..+ +.|+|.-..--....++|+.||+|
T Consensus 39 ~q~~~~~~pG~nv~~g~~~tl~a~~~G~V 67 (69)
T 2FTC_O 39 TQRHFRWHPGAHVGVGKNKCLYALEEGIV 67 (69)
T ss_pred ecCCCeEcCCCCceeCCCCcEEeCccEEE
No 119
>3NE5_C Cation efflux system protein cusB; Transmembrane helix, METAL TRANSPORT; 2.898A {Escherichia coli}
Probab=50.68 E-value=37 Score=29.50 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
...|.||.||+|... . + .|+.|.+||+|+++
T Consensus 207 ~~~i~Ap~~G~V~~~---------------------------~--~~~g~~v~~g~~l~~i 238 (413)
T 3NE5_C 207 RFTLKAPIDGVITAF---------------------------D--LRAGMNIAKDNVVAKI 238 (413)
T ss_dssp EEEEECSSSEEEEEC---------------------------C--CCBTCEECTTCCSEEE
T ss_pred ceEEEcCCCeEEEEE---------------------------e--cCCCCeecCCCeeEEE
No 120
>8DCK_D Membrane fusion protein (MFP) family protein; hydrolase, transport, MEMBRANE PROTEIN; HET: ATP; 3.4A {Escherichia coli CFT073}
Probab=50.27 E-value=1e+02 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CeEEEecCeEE----EE-CCCcccCCccEEEEEeCC-EEEEEEEecC--CCCC-CCCeec
Q FD01845354_014 27 TPIYAVADGVL----VR-NPYSFYSGTSAVEIRHGE-LILRYGEIAN--GSYT-GGSSVK 77 (133)
Q Consensus 27 t~V~Ai~dG~V----~~-~~~~FY~gT~ai~I~H~~-~i~RYGEi~~--~~~v-~G~~V~ 77 (133)
..|.||.||+| +. .....-.|+-.+.|.-.. -+.-...|.. ...+ .|+.|.
T Consensus 328 ~~i~AP~~G~V~~~~~~~~g~~v~~g~~l~~i~~~~~~~~v~~~v~~~~~~~i~~G~~v~ 387 (478)
T 8DCK_D 328 SVIRAPVSGKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387 (478)
T ss_dssp ------------------------------------------------------------
T ss_pred cEEECCCCeEEEEeEeecCCceecCCceeEEEecCCCcEEEEEEEecccccccCCCCeEE
No 121
>7JIL_W 50S ribosomal protein L27; Translation Initiation, Protein synthesis, bS21, RIBOSOME; 2.8A {Flavobacterium johnsoniae}
Probab=49.83 E-value=26 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLV 38 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~ 38 (133)
|..| +.|+|.-..--....++|+.||+|.
T Consensus 39 rQ~g~~~~pG~nv~~g~d~tL~A~~~G~V~ 68 (86)
T 7JIL_W 39 RQRGSKHNPGENVYISKDHTLHARVAGVVK 68 (86)
T ss_dssp ECSSSSEEECTTEEECTTSCEEESSSEEEE
T ss_pred EecCceecCCCCeEecCCCeEEeCcCcEEE
No 122
>4EAD_A Thymidine phosphorylase; Thymidine phosphorylase, Transferase-Transferase inhibitor complex; HET: SO4, GOL, 0NP; 1.5A {Escherichia coli} SCOP: d.41.3.1, c.27.1.1, a.46.2.1, l.1.1.1
Probab=49.32 E-value=22 Score=31.68 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .||+|++||+|++|
T Consensus 387 ~~~G~~V~~g~~l~~v 402 (440)
T 4EAD_A 387 ARLGDQVDGQRPLAVI 402 (440)
T ss_dssp CCTTCEEBTTBCSEEE
T ss_pred ccCCCeecCCCcEEEE
No 123
>3NA6_A Succinylglutamate desuccinylase/aspartoacylase; Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: MSE; 2.0A {Ruegeria sp. TM1040}
Probab=49.04 E-value=22 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++||+||.+
T Consensus 272 ~~~g~~v~~G~~i~~~ 287 (331)
T 3NA6_A 272 IDLGEPVQEGDLVARV 287 (331)
T ss_dssp SCTTCEECTTCEEEEE
T ss_pred cCCCCcccCCCeEEEE
No 124
>4V84_DW 50S ribosomal protein L27; 70S, ribosome, IGR, IRES, PSIV, CrPV; HET: MG; 3.4A {Thermus thermophilus HB27}
Probab=48.90 E-value=29 Score=24.40 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|.-| +.|+|--.+.-....++|+.||+|
T Consensus 30 rQ~g~~~~pG~nv~~gkd~tl~A~~~G~V 58 (76)
T 4V84_DW 30 RQRGTRFKPGKNVGMGRDFTLFALVDGVV 58 (76)
T ss_pred eecCCccCCCCcccccCCCcEEeCcCeEE
No 125
>6S0Z_U 50S ribosomal protein L27; Ribosome, antibiotics, resistance, Staphylococcus aureus, exit tunnel, RNA, rProteins, erythromycin; HET: ERY; 2.3A {Staphylococcus aureus}
Probab=47.81 E-value=30 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|+|--.+--....++|..||+|
T Consensus 31 rQ~g~~~~PG~nv~~g~d~tl~a~~~G~V 59 (77)
T 6S0Z_U 31 RQRGTKIYPGENVGRGGDDTLFAKIDGVV 59 (77)
T ss_dssp ECSSCSEEECTTEEECTTSCEEESSSEEE
T ss_pred eccCCeecCCCCcccCCCCcEEeccCeEE
No 126
>6XZ7_W 50S ribosomal protein L27; 50S ribosomal subunit, dirithromycin, antibiotics, cryo-EM, RIBOSOME; HET: 4D4, 1MA, 6MZ, 3TD, 5MC, H2U, OMC, OMU, 4SU, OMG, PSU, MEQ, MG, G7M, DI0, M2G, 2MA, 7MG, 1MG, 31M, YYG, 2MG, 5MU; 2.1A {Escherichia coli (strain K12)}
Probab=47.76 E-value=28 Score=24.42 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|.-| +.|+|--...-....++|++||+|
T Consensus 30 rQ~g~~~~PG~nv~~gkd~tl~a~~~G~V 58 (76)
T 6XZ7_W 30 RQRGTKFHAGANVGCGRDHTLFAKADGKV 58 (76)
T ss_dssp ECSSCSSEECTTEEECTTCCEEESSSEEE
T ss_pred EeeCCcccCCCCccccCCCeEEeCcCeEE
No 127
>2DSJ_B Pyrimidine-nucleoside (Thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics; 1.8A {Thermus thermophilus}
Probab=47.52 E-value=25 Score=31.31 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .||+|++||+|++|
T Consensus 374 ~~~G~~v~~g~~l~~~ 389 (423)
T 2DSJ_B 374 KKPGDRVERGEALALV 389 (423)
T ss_dssp CCTTCEECTTCEEEEE
T ss_pred ecCCCeeeCCCeEEEE
No 128
>4KKU_C Membrane fusion protein; Membrane protein; HET: MSE; 2.35A {Borrelia burgdorferi}
Probab=47.34 E-value=42 Score=27.46 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+.+|+|... . .|+.|++||+|+.+
T Consensus 54 ~i~~~~~G~v~~~------------------------------~~~~G~~v~~g~~l~~~ 83 (296)
T 4KKU_C 54 DIFPDAVGKITSL------------------------------RIKLGAYVQKGQIVATL 83 (296)
T ss_dssp EECCSSCEEEEEE------------------------------CCCTTCEECTTCEEEEE
T ss_pred EEcCCCCeEEEEE------------------------------EEcCCCeEcCCCEEEEE
No 129
>2BCO_B Succinylglutamate desuccinylase; NESG, VPR14, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, HYDROLASE; HET: MSE; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7
Probab=47.08 E-value=23 Score=30.32 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCCC-CCCeecCCCeeEEEE
Q FD01845354_014 68 GSYT-GGSSVKKGQIIAKVG 86 (133)
Q Consensus 68 ~~~v-~G~~V~~GQ~Ig~vG 86 (133)
...+ .|+.|++||+||+++
T Consensus 278 ~~~~~~~~~v~~Ge~ig~~~ 297 (350)
T 2BCO_B 278 DDNVENFTSFVHGEVFGHDG 297 (350)
T ss_dssp CTTCCBC-------------
T ss_pred CCCccccceeCCCcEEEEcC
No 130
>4GA4_A Putative thymidine phosphorylase; phosphorolysis, TRANSFERASE; HET: PO4; 3.51A {Thermococcus kodakarensis}
Probab=46.85 E-value=26 Score=31.41 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCCeecCCCeeEEE
Q FD01845354_014 72 GGSSVKKGQIIAKV 85 (133)
Q Consensus 72 ~G~~V~~GQ~Ig~v 85 (133)
.||+|++||+|++|
T Consensus 373 ~Gd~V~~G~~l~~v 386 (440)
T 4GA4_A 373 VGEKVKEGDPLFTI 386 (440)
T ss_dssp TTCEECTTCEEEEE
T ss_pred CCCEecCCCcEEEE
No 131
>7CNW_A Phosphatidylserine decarboxylase beta chain; Phosphatidylserine decarboxylase, pyruvoyl-dependent decarboxylase, auto-cleaved, serine protease, MEMBRANE PROTEIN, LYASE; HET: LMT, PYR; 1.9A {Escherichia coli K-12}
Probab=46.74 E-value=54 Score=27.43 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred EEEecCeEEEECCCcccCCcc----------------------EEEEEeCC-EEEEEEEecC-CCCC-C-----------
Q FD01845354_014 29 IYAVADGVLVRNPYSFYSGTS----------------------AVEIRHGE-LILRYGEIAN-GSYT-G----------- 72 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~FY~gT~----------------------ai~I~H~~-~i~RYGEi~~-~~~v-~----------- 72 (133)
+.||.+|+|+.. ...-...+ .++-++|. .++--|-..- .+.. .
T Consensus 146 ~hsP~~g~v~~~-~~i~G~~~~v~~~~~~~~~~~~~~NeR~~~~~~~~~G~v~~v~VGa~~Vg~I~~~~~~~~~~~~~~~ 224 (253)
T 7CNW_A 146 VHMPCNGILREM-IYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGI 224 (253)
T ss_dssp EECSSCEEEEEE-EEECCBCCCCSHHHHHHSTTHHHHBCEEEEEEEETTEEEEEEEECCSSCCEEEETTTEEEESSCCSS
T ss_pred eecccCeEEEEE-EEeCCCcccCCccccccCCChhhcCeEEEEEEECCCCcEEEEEecCeeeCcEEEEeCCCCCCCCCCc
Q ss_pred -------------CCeecCCCeeEE
Q FD01845354_014 73 -------------GSSVKKGQIIAK 84 (133)
Q Consensus 73 -------------G~~V~~GQ~Ig~ 84 (133)
|+.|+|||.||.
T Consensus 225 ~~~~~~~~~~~~~~~~~~kG~elG~ 249 (253)
T 7CNW_A 225 IKRWTWPAGENDGSVALLKGQEMGR 249 (253)
T ss_dssp CEEEECCCTTSTTCEEECTTCEEEE
T ss_pred eeceecCCCCCCCcceecCCCeeee
No 132
>7YBU_B Propionyl-CoA carboxylase alpha chain, mitochondrial; Cryo-EM, PCC, Mitochondria, CYTOSOLIC PROTEIN; HET: BTI; 2.2A {Homo sapiens}
Probab=46.67 E-value=40 Score=31.41 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+..|+|.+. . .|+.|++||+|+.+
T Consensus 661 ~v~~~~~G~v~~~------------------------------~~~~G~~V~~g~~l~~~ 690 (728)
T 7YBU_B 661 VLRSPMPGVVVAV------------------------------SVKPGDAVAEGQEICVI 690 (728)
T ss_dssp EEEESSCEEEEEE------------------------------CCCTTCEECTTCEEEEE
T ss_pred EEECCCCEEEEEE------------------------------EcCCCCeecCCCeeEEe
No 133
>PF02666.19 ; PS_Dcarbxylase ; Phosphatidylserine decarboxylase
Probab=46.33 E-value=24 Score=27.27 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCCeEEEecCeEEEEC
Q FD01845354_014 24 PPGTPIYAVADGVLVRN 40 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~ 40 (133)
+.+. |+||+||+|+..
T Consensus 11 ~~~~-ivSPaDg~v~~~ 26 (162)
T Q23YS6_TETTS/4 11 LQNN-LKQSFKDKIEQN 26 (162)
T ss_pred CCCc-cccCCCceEEEc
No 134
>3D4R_C Domain of Unknown Function from the Pfam-B_34464 Family; STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION; HET: EDO, MSE; 2.2A {Methanococcus maripaludis}
Probab=44.01 E-value=30 Score=28.78 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred EecC---CCCC-CCCeecCCCeeEEE
Q FD01845354_014 64 EIAN---GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 64 Ei~~---~~~v-~G~~V~~GQ~Ig~v 85 (133)
|+.. -..+ .|++|++|+.||++
T Consensus 106 eveG~~V~~~v~eG~~V~~gd~iayi 131 (169)
T 3D4R_C 106 PAEGYKVYPIMDFGFRVLKGYRLATL 131 (169)
T ss_dssp EECSSEEEECCCCSEEECTTCEEEEE
T ss_pred EccceEEEEeeeCCcEecCCCEEEEE
No 135
>PF00364.26 ; Biotin_lipoyl ; Biotin-requiring enzyme
Probab=43.60 E-value=46 Score=18.68 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred CCCeecCCCeeEEE
Q FD01845354_014 72 GGSSVKKGQIIAKV 85 (133)
Q Consensus 72 ~G~~V~~GQ~Ig~v 85 (133)
.|+.|++||+|+.+
T Consensus 23 ~g~~v~~~~~~~~~ 36 (73)
T ODO2_TAKRU/40- 23 VGDSVTEDEVVCEI 36 (73)
T ss_pred CCCEecCCCeEEEE
No 136
>PF09891.13 ; DUF2118 ; Uncharacterized protein conserved in archaea (DUF2118)
Probab=43.57 E-value=30 Score=28.47 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred EecC---CCCC-CCCeecCCCeeEEE
Q FD01845354_014 64 EIAN---GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 64 Ei~~---~~~v-~G~~V~~GQ~Ig~v 85 (133)
|+.. -..+ .|++|++|+.||++
T Consensus 100 ev~G~~V~~~v~eG~~V~~gd~iayi 125 (162)
T Q5JEN4_THEKO/2 100 PVEGFTKTLIANVGNRVRTGDAFAAV 125 (162)
T ss_pred EeeccEEEEEecCCCeecCCCeEEEE
No 137
>3FPP_B Macrolide-specific efflux protein macA; Hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein, Antibiotic resistance, Cell inner membrane, Cell; 2.99A {Escherichia coli}
Probab=41.59 E-value=97 Score=25.19 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEcCCCCcEEEEEEe
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y 100 (133)
..|.||.||+|... . .|+.|..|+....+..+.. ..-+.++++
T Consensus 154 ~~i~Ap~~G~v~~~------------------------------~~~~g~~v~~~~~~~~l~~i~~-~~~~~v~~~ 198 (341)
T 3FPP_B 154 TRIVAPMAGEVTQI------------------------------TTLQGQTVIAAQQAPNILTLAD-MSAMLVKAQ 198 (341)
T ss_dssp TEEECSSCSBCCCC------------------------------CSCSSCEECCSSSCCCCEEEEE-EEEEEEEEE
T ss_pred cEEEcCCCcEEEEE------------------------------EecCCCeEEecccCCeeEEecC-CcceEEEEE
No 138
>4U9O_A Na(+)-translocating NADH-quinone reductase subunit A; sodium translocation, Rossmann fold, oxidoreductase; 1.6A {Vibrio cholerae}
Probab=41.49 E-value=57 Score=28.16 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEE
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIR 54 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~ 54 (133)
+.+.+|+||.+|+|.......-.-+.+|.|+
T Consensus 66 ~~~~~v~spvsG~V~~i~~~~g~~~~~i~I~ 96 (360)
T 4U9O_A 66 NPGVKFTSPVSGKVVEINRGAKRVLQSVVIE 96 (360)
T ss_dssp STTCEEECSSSEEEEEEEECGGGCEEEEEEE
T ss_pred CCCCEEECCCCcEEEEEeCCCCCeeEEEEEE
No 139
>3FMC_D Putative succinylglutamate desuccinylase / aspartoacylase; PUTATIVE SUCCINYLGLUTAMATE DESUCCINYLASE / ASPARTOACYLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE; HET: SO4, MSE, GOL; 1.8A {Shewanella amazonensis}
Probab=41.38 E-value=76 Score=27.24 Aligned_cols=39 Identities=26% Similarity=0.214 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred eeccCC----CCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCCCCCeecCCCeeEEEEE
Q FD01845354_014 19 CDLKFP----PGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYTGGSSVKKGQIIAKVGR 87 (133)
Q Consensus 19 ~DLy~~----~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v~G~~V~~GQ~Ig~vG~ 87 (133)
.|.... .-++|.||.||+|+.. .....|++|+.|++|+.
T Consensus 321 ~~~~~~~~~~~~~~i~ap~dG~i~~~------------------------------~~~~~v~~g~~l~~i~~ 363 (368)
T 3FMC_D 321 LRLDLYGTGEELTVLRLPEDGVPILH------------------------------FASASVHQGTELYKVMT 363 (368)
T ss_dssp ECGGGTTSGGGEEEEECSSCBEEEEE------------------------------CSSSEECTTCEEEEEEC
T ss_pred EccccCCCCcceEEEECCCCeEEEEE------------------------------eCCCeeCCCCEEEEEee
No 140
>5NG5_B Multidrug efflux pump subunit AcrA; multi-drug efflux membrane transport RND superfamily Drug resistance, membrane protein; HET: 5QF; 6.5A {Escherichia coli}
Probab=40.20 E-value=69 Score=26.64 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCe--eEEEEEcCC
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQI--IAKVGRLNS 90 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~--Ig~vG~l~~ 90 (133)
...|+||.||+|... . .|+.|.+||. |+.+.....
T Consensus 149 ~~~i~AP~~G~V~~~------------------------------~~~~G~~v~~g~~~~~~~i~~~~~ 187 (373)
T 5NG5_B 149 YTKVTSPISGRIGKS------------------------------NVTEGALVQNGQATALATVQQLDP 187 (373)
T ss_dssp HTTTBCSSCEEECCC------------------------------SSCTTCEECTTCSSCSEEEEEEEE
T ss_pred ccEEECCCCeEEEeE------------------------------EecCCCcccCCCceeEEEEeeCce
No 141
>2JUB_A Internal protein I; IpI*, T4 phage, solution, Endonuclease Inhibitor; NMR {Enterobacteria phage T4}
Probab=40.12 E-value=69 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=0.0 Template_Neff=2.900
Q ss_pred CCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEec
Q FD01845354_014 25 PGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIA 66 (133)
Q Consensus 25 ~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~ 66 (133)
.|.|+++..||.++.. .-|.|+-...+.-+. +|+.+-+.+
T Consensus 15 eGkpl~~l~dG~e~~g--tVyLgdg~yA~k~~~~ivis~~~~s 55 (76)
T 2JUB_A 15 EGKPMISLVDGEEIKG--TVYLGDGWSAKKDGATIVISPAEET 55 (76)
T ss_dssp CSSEEECTTTCCEEET--CSSTTTTCEEEECSSEEEEESSCCC
T ss_pred CCcceeeccCCcEEec--eEEECCccEEEEeCCeEEECCchhh
No 142
>PF11634.12 ; IPI_T4 ; Nuclease inhibitor from bacteriophage T4
Probab=40.12 E-value=69 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=0.0 Template_Neff=2.900
Q ss_pred CCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEec
Q FD01845354_014 25 PGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIA 66 (133)
Q Consensus 25 ~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~ 66 (133)
.|.|+++..||.++.. .-|.|+-...+.-+. +|+.+-+.+
T Consensus 15 eGkpl~~l~dG~e~~g--tVyLgdg~yA~k~~~~ivis~~~~s 55 (76)
T IPI1_BPT4/20-9 15 EGKPMISLVDGEEIKG--TVYLGDGWSAKKDGATIVISPAEET 55 (76)
T ss_pred CCcceeeccCCcEEec--eEEECCccEEEEeCCeEEECCchhh
No 143
>8A1W_A Na(+)-translocating NADH-quinone reductase subunit A; quinone, MEMBRANE PROTEIN; HET: UQ1, FMN, 3PE, FAD, LMT, RBF; 2.56A {Vibrio cholerae}
Probab=39.91 E-value=71 Score=28.82 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEEeCC
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE 57 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~ 57 (133)
..+.+|+||.+|+|......+-.-+.+|.|+...
T Consensus 85 ~~~~~v~SPvsG~V~~i~~~~~~~~~~i~I~~~~ 118 (468)
T 8A1W_A 85 NPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAG 118 (468)
T ss_pred CCCcEEECCCCcEEEEEecCCCCceEEEEEEeCC
No 144
>PF10011.13 ; DUF2254 ; Predicted membrane protein (DUF2254)
Probab=39.85 E-value=20 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecC---------CCCC-CCCeecCCCeeEEE
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIAN---------GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~---------~~~v-~G~~V~~GQ~Ig~v 85 (133)
.+...+|.|+.+|.|... .+-.+.. ...+ .||.|.+|++|+++
T Consensus 193 ~~~~~~i~a~~sGyv~~I--------------------d~~~L~~~a~~~~~~i~l~~~~GdfV~~g~~l~~v 245 (368)
T D7CVV2_TRURR/1 193 PGEGVLLVAPRGGYLQGF--------------------DRQGLITFADRRGVVLEVLHETGAFLLEGQPLVRV 245 (368)
T ss_pred CCCcEEEECCCCceEEEE--------------------cHHHHHHHHHHcCeEEEEEecCCCeeeCCCeEEEE
No 145
>PF02749.20 ; QRPTase_N ; Quinolinate phosphoribosyl transferase, N-terminal domain
Probab=39.46 E-value=53 Score=22.86 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++|++|+.+
T Consensus 53 ~~dG~~v~~g~~i~~i 68 (90)
T Q0ARK5_MARMM/2 53 MDDGDTVKPGDVLISV 68 (90)
T ss_pred CCCCCEeCCCCEEEEE
No 146
>4OGQ_C Apocytochrome f; Electron transfer, Plastocyanin, cytochrome c6, Thylakoid membrane, ELECTRON TRANSPORT; HET: UMQ, 2WA, 7PH, 2WD, MYS, 1O2, 8K6, CLA, SQD, 2WM, BCR, OPC, HEC, 3WM; 2.501A {Nostoc sp.}
Probab=39.46 E-value=1.1e+02 Score=28.47 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred CCCCCCcccceeccCCCCCeEEEecCeEEEECCCccc--CC--ccEEEEEeCCEEEEEEEecC--CCCC-CCCeecCCCe
Q FD01845354_014 9 PRSGGRKHAGCDLKFPPGTPIYAVADGVLVRNPYSFY--SG--TSAVEIRHGELILRYGEIAN--GSYT-GGSSVKKGQI 81 (133)
Q Consensus 9 ~R~gGR~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY--~g--T~ai~I~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~ 81 (133)
+|+-||-----+.-.......-|...|+|... ..-= .| .|.|+|++.+--.-.-.|.+ ...+ .||.|+.+|+
T Consensus 196 grNrgRGqlyp~g~~sNn~~~~a~~~G~i~~I-~~~~~~~g~~~~~i~i~~~~g~~~~~~ip~g~~l~v~~G~~v~~~q~ 274 (333)
T 4OGQ_C 196 GGNRGRGQVYPTGEKSNNNLYSAAATGTISKI-AKQEGEDGSVKYLVDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDA 274 (333)
T ss_dssp EEEESCCSBCTTSCBCSSSCCCCSSSSCCCCC-CCCCSSSSSCEEEECC--------CEEEESSSCBCCCSSCCCCTTCC
T ss_pred ccccccceeccCCccccCCcccccccCcceee-eeccCCCCCeeEEEEEEcCCCcEEEEEeCCCCeeEecCCCeEecCCC
Q ss_pred e
Q FD01845354_014 82 I 82 (133)
Q Consensus 82 I 82 (133)
|
T Consensus 275 L 275 (333)
T 4OGQ_C 275 L 275 (333)
T ss_dssp S
T ss_pred c
No 147
>2XHA_B TRANSCRIPTION ANTITERMINATION PROTEIN NUSG; TRANSCRIPTION; HET: ACT; 1.906A {THERMOTOGA MARITIMA}
Probab=39.15 E-value=1.7e+02 Score=23.08 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCC-E-EEEEEEecC-CCC--C-CCCeecCCCeeEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGE-L-ILRYGEIAN-GSY--T-GGSSVKKGQIIAK 84 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~-i~RYGEi~~-~~~--v-~G~~V~~GQ~Ig~ 84 (133)
.+.|+.+|.|. |......+.+.... . ...|---.. ... + .|+.|++||.|+.
T Consensus 42 ~i~s~~~G~v~-----~~~~~~~i~~~~~~~~~~~~~~i~~~~~l~~~v~~g~~V~~g~~l~~ 99 (193)
T 2XHA_B 42 PIYARRSGVIV-----DVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGLPLSK 99 (193)
T ss_dssp CEECSSCEEEE-----EEEEEEEEEEECTTSSCEEEEEEEGGGCBCTTCCTTCEECTTCBSBS
T ss_pred CeecCCcEEEE-----EeCCcEEEEEEecCCceEEEEEcCCCCeEecccCCCCeeCCCCceec
No 148
>2A6H_M DNA-directed RNA polymerase beta chain; RNA POLYMERASE HOLOENZYME, STREPTOLYDIGIN, ANTIBIOTIC, TRANSCRIPTION REGULATION, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, TRANSFERASE; HET: STD; 2.4A {Thermus thermophilus} SCOP: e.29.1.1
Probab=38.89 E-value=79 Score=31.98 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEecCeEEEECCCcc----cCCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecCCCeeE
Q FD01845354_014 29 IYAVADGVLVRNPYSF----YSGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKKGQIIA 83 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~F----Y~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig 83 (133)
+.|+.||+|+.....+ |..-....+.... +....+-..+ ...+ .|++|++||+|+
T Consensus 595 ~~a~~~g~V~~v~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~v~~g~~v~~g~ila 656 (1119)
T 2A6H_M 595 LYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLA 656 (1119)
T ss_dssp EECSSSEEEEEECSSBEEEEETTTEEECCBCCCSEECTTSCEECCEECCCSSCCBCTTCEEE
T ss_pred EEeCCCcEEEEEeCCeEEEEeCCCcEEEEeccceeeCCCCCccccCCeeeCCCEEeCCCccc
No 149
>4GA6_A Putative thymidine phosphorylase; phosphorolysis, TRANSFERASE; HET: AMP, SO4; 2.21A {Thermococcus kodakarensis}
Probab=38.11 E-value=41 Score=31.43 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .||+|++||+|++|
T Consensus 454 ~~~Gd~V~kG~~l~ti 469 (513)
T 4GA6_A 454 VKVGEKVKEGDPLFTI 469 (513)
T ss_dssp CCTTCEECTTCEEEEE
T ss_pred eeCCCEEcCCCcEEEE
No 150
>7P6Z_u 50S ribosomal protein L27; In-cell cryo-electron tomography, sub-tomogram analysis, ribosome; HET: MG; 3.5A {Mycoplasma pneumoniae M129}
Probab=38.09 E-value=49 Score=24.89 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|+|.-.+--..-.++|..||+|
T Consensus 53 rQ~g~~~~PG~nv~~g~d~tL~Al~~G~V 81 (104)
T 7P6Z_u 53 RQRGTRVYPGVNVGLGSDDTLFALSDGLV 81 (104)
T ss_dssp ECSSCSSEECSSEEECTTCEEEESSCBEE
T ss_pred eccCCcccCCCceeecCCCcEEeccCcEE
No 151
>7M7K_B Pyrimidine-nucleoside phosphorylase; Pyrimidine, Nucleoside, Phosphorylase, Enzyme, TRANSFERASE; HET: URI, SO4; 1.89A {Parageobacillus thermoglucosidasius} SCOP: d.41.3.0, c.27.1.1, a.46.2.0, l.1.1.1
Probab=37.93 E-value=40 Score=30.11 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .||+|++||+|++|
T Consensus 387 ~~~G~~v~~g~~l~~v 402 (438)
T 7M7K_B 387 KKVGDAVKKGESLVTI 402 (438)
T ss_dssp CCTTCEECTTCEEEEE
T ss_pred EeCCCeecCCCeEEEE
No 152
>6ERI_AW 50S ribosomal protein L27, chloroplastic; Chloroplast, translation, ribosome; HET: MG; 3.0A {Spinacia oleracea}
Probab=37.64 E-value=58 Score=25.22 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|+|.-.+.-....++|..||+|
T Consensus 36 rQ~g~~~~PG~nV~~grd~tL~A~~~G~V 64 (114)
T 6ERI_AW 36 RQRGTKFHPGKNVGIGKDHTIFALIDGLV 64 (114)
T ss_pred eccCCcccCCCccccCCCCeEEeccCeEE
No 153
>4IQZ_E DNA-directed RNA polymerase subunit beta'; Function of insertion is unknown, UNKNOWN FUNCTION; HET: MSE, IOD; 2.1A {Escherichia coli}
Probab=37.45 E-value=1.9e+02 Score=23.18 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEE
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~ 84 (133)
.+.|..+++-.+|.|.-. ..-..-...+.|.-+..+. + .|++|++||+|+.
T Consensus 57 ~~~g~~~v~~~~g~i~i~-~~~~~~~~~~~ip~g~~l~----------Vk~G~~V~~g~~l~~ 108 (250)
T 4IQZ_E 57 NSSGKLVITSRNTELKLI-DEFGRTKESYKVPYGAVLA----------KGDGEQVAGGETVAN 108 (250)
T ss_dssp CTTSCEEECCSSEEEEEE-SCC--CCEEEEECTTCEES----------SCTTCEECTTCEEEE
T ss_pred CCCCCEEEEccCcEEEEE-cCCCCEEEEEECCCCCEEE----------eCCCCeecCCCEEEe
No 154
>8SYI_Z DNA-directed RNA polymerase subunit beta'; Transcription regulation RNAP NusG cryo-EM, TRANSCRIPTION;{Synechococcus elongatus}
Probab=37.42 E-value=1.5e+02 Score=31.91 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred cccceeccCCCCCeEEEecCeEEEECCCcc-------cCCccEEEEEeCC-EEEEEEE-------ecC--CCCC-CCCee
Q FD01845354_014 15 KHAGCDLKFPPGTPIYAVADGVLVRNPYSF-------YSGTSAVEIRHGE-LILRYGE-------IAN--GSYT-GGSSV 76 (133)
Q Consensus 15 ~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~F-------Y~gT~ai~I~H~~-~i~RYGE-------i~~--~~~v-~G~~V 76 (133)
.|.|-=.-......+.||.+|.|.-. ... ..|-.++.+.... +.+- .+ |.. -..+ .|+.|
T Consensus 342 FH~~Gv~s~~~~~~i~~~~~G~v~~~-~~~~~~~~rt~~g~~~~~~~~~~~~~i~-~~~~~~~~~ip~~s~l~v~~~~~V 419 (1318)
T 8SYI_Z 342 FHTGGVFTGETARLLRAPVAGTIKLG-KKARTRPYRTRHGEEALLAEANFDLVLE-GKGRKETFAILQGSTIFVQDGDKV 419 (1318)
T ss_dssp -----CCSSTTEEEEEESSCCBCCCT-TCSCCEEEECSSSCEEEEECSCCBCCCE-ETTEECCCBCCTTEEECCCSSCBC
T ss_pred ccccCcccccccceEEcCCCeEEEec-CCcccceeECCCCcEEEEEecCceEEEe-cCCcEEEEEEcCCCEEEecCCCeE
Q ss_pred cCCCeeEEE
Q FD01845354_014 77 KKGQIIAKV 85 (133)
Q Consensus 77 ~~GQ~Ig~v 85 (133)
++||+||++
T Consensus 420 ~~~qiiae~ 428 (1318)
T 8SYI_Z 420 AAEAILAEV 428 (1318)
T ss_dssp CTTEEEEEE
T ss_pred ecCceEEEc
No 155
>2KCC_A Acetyl-CoA carboxylase 2; acetyl-CoA carboxylase, biotinoyl domain, BCCP, BirA, biotinylation, Alternative splicing, ATP-binding, Biotin, Fatty acid biosynthesis, Ligase, Lipid; NMR {Homo sapiens}
Probab=37.09 E-value=64 Score=20.19 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++||.|+.+
T Consensus 21 ~~~g~~v~~~~~l~~~ 36 (84)
T 2KCC_A 21 VEDGGHVEAGSSYAEM 36 (84)
T ss_dssp SCTTEEECTTCEEEEE
T ss_pred eCCCCEECCCCEEEEE
No 156
>4KKU_C Membrane fusion protein; Membrane protein; HET: MSE; 2.35A {Borrelia burgdorferi}
Probab=36.29 E-value=1.9e+02 Score=23.78 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC-CCCeecCCCeeEEEEEcCCCCcEEEEEEec
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT-GGSSVKKGQIIAKVGRLNSGSSMLHLEIYT 101 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~vG~l~~~~~MLHfE~Y~ 101 (133)
..|.||.+|+|... .+ .|+.|.+|++|+++..... ..+.+.+..
T Consensus 95 ~~i~Ap~~G~v~~~-----------------------------~~~~g~~v~~~~~~~~i~~~~~--~~v~~~v~~ 139 (296)
T 4KKU_C 95 SPVRAPISGYILNI-----------------------------TKKIGETVNPQSNIAVVGRIDT--KQILTYVSE 139 (296)
T ss_dssp EEEECSSSEEEEEE-----------------------------CCCTTCEECTTCCCEEEECTTS--EEEEEEEEH
T ss_pred ceEECCCCeEEEEE-----------------------------EcCCCCeeCCCCceEEEEcCCc--eEEEEEeeH
No 157
>5OLN_A Pyrimidine-nucleoside phosphorylase; Transferase, Pyrimidine-nucleoside phosphorylase, NP-2 superfamily; HET: IMD; 1.88A {Bacillus subtilis (strain 168)} SCOP: a.46.2.0, c.27.1.0, d.41.3.0
Probab=36.13 E-value=44 Score=29.75 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .||.|++||+|++|
T Consensus 383 ~~~G~~v~~g~~l~~v 398 (434)
T 5OLN_A 383 KKVGDKVEKGEPLVTL 398 (434)
T ss_dssp CCTTCEECTTSEEEEE
T ss_pred eecCCeecCCceEEEE
No 158
>1DD2_A TRANSCARBOXYLASE 1.3S SUBUNIT; ANTIPARALLEL BETA SHEET, HAMMERHEAD, BIOCYTIN, TRANSFERASE; NMR {Propionibacterium freudenreichii subsp. shermanii} SCOP: b.84.1.1
Probab=36.12 E-value=70 Score=18.67 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred CCCeecCCCeeEEE
Q FD01845354_014 72 GGSSVKKGQIIAKV 85 (133)
Q Consensus 72 ~G~~V~~GQ~Ig~v 85 (133)
.|+.|++|++|+.+
T Consensus 26 ~g~~v~~g~~l~~~ 39 (77)
T 1DD2_A 26 EGDTVKAGQTVLVL 39 (77)
T ss_dssp TTCEECBTBEEEEE
T ss_pred CCCEECCCCEEEEE
No 159
>3U9T_A Methylcrotonyl-CoA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, bt domain, bccp domain, LIGASE; 2.9A {Pseudomonas aeruginosa}
Probab=35.76 E-value=2.4e+02 Score=26.20 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEec--------------C---------CCCC-CCC
Q FD01845354_014 19 CDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIA--------------N---------GSYT-GGS 74 (133)
Q Consensus 19 ~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~--------------~---------~~~v-~G~ 74 (133)
++.....++.+....||..... ....+...+.|....-+...-++. - ...+ .|+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~a~~~g~v~~~~v~~G~ 602 (655)
T 3U9T_A 525 PSQYRLDGDDLVSRVDGVTRRS--AALRRGRQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVLVEPGQ 602 (655)
T ss_dssp SCSEEEETTEEEEEETTEEEEE--EEEEETTEEEEECSSSEEEEEECCHHHHHC--------------------------
T ss_pred CeEEEecCCEEEEEECCEEEEE--EEEEeCcEEEEEECCEEEEEEEeccchHHHHhhcccCEEECCccceEEEEEeCCCC
Q ss_pred eecCCCeeEEE
Q FD01845354_014 75 SVKKGQIIAKV 85 (133)
Q Consensus 75 ~V~~GQ~Ig~v 85 (133)
.|++||+|+.+
T Consensus 603 ~V~~g~~l~~i 613 (655)
T 3U9T_A 603 TVEAGATLVVL 613 (655)
T ss_dssp -----------
T ss_pred eecCCCEEEEE
No 160
>5X8T_X protein L27; Cryo-EM, ribosome, chloroplast ribosome; 3.3A {Spinacia oleracea}
Probab=35.69 E-value=61 Score=26.01 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|+|.-.+.-....++|..||+|
T Consensus 38 rQrg~~~~PG~NV~~Gkd~tL~Al~~G~V 66 (137)
T 5X8T_X 38 RQRGTKFHPGKNVGIGKDHTIFALIDGLV 66 (137)
T ss_pred eecCCcccCCCccccCCCCeEEeccCEEE
No 161
>PF16886.9 ; ATP-synt_ab_Xtn ; ATPsynthase alpha/beta subunit N-term extension
Probab=35.58 E-value=62 Score=24.27 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CCCC-CCCeecCCCeeEEE
Q FD01845354_014 68 GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 68 ~~~v-~G~~V~~GQ~Ig~v 85 (133)
...+ .|+.|..|++||.|
T Consensus 38 ~p~~~~G~~v~~G~~~g~v 56 (121)
T I4BW73_ACEMN/9 38 MPRAKKGDAVVSGDVLGIV 56 (121)
T ss_pred CCccCCCCeeecCcEEEEE
No 162
>8DKC_C DNA-directed RNA polymerase subunit beta; Porphyromonas gingivalis, RNA polymerase, transcription, CFB group bacteria; 3.5A {Porphyromonas gingivalis}
Probab=35.31 E-value=1.2e+02 Score=31.30 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCC--EEEEEEE----------------------------ecC-CCCC-CC
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE--LILRYGE----------------------------IAN-GSYT-GG 73 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~--~i~RYGE----------------------------i~~-~~~v-~G 73 (133)
+..+.|+.+|+|+.+ .. +.++|.. ..+ ...+ .|
T Consensus 677 ~~~~~a~~~g~v~~v---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~v~~g 741 (1269)
T 8DKC_C 677 RTQIVAERGGEVVFV---------------DASCIKIRYDRTADEEFVSFDDAIVTYYLPKYRKTNQSTTIDLHPICSKG 741 (1269)
T ss_dssp CCSCBCCSCEEEEEE---------------CSSEEEEEECSGGGTSSCCCCCCCEEEECCCSBCCTTSBCBCCEECCCTT
T ss_pred CCeEEeCCCeEEEEE---------------eCCeEEEEeCCCCCccccccCccEEEEeccccCCCCCCCeeceecccCCC
Q ss_pred CeecCCCeeEE
Q FD01845354_014 74 SSVKKGQIIAK 84 (133)
Q Consensus 74 ~~V~~GQ~Ig~ 84 (133)
+.|++||+|+.
T Consensus 742 ~~v~~g~ila~ 752 (1269)
T 8DKC_C 742 DRVEAGQILTE 752 (1269)
T ss_dssp CEECTTCBCEE
T ss_pred CEEcCCCeeee
No 163
>3LNN_A Membrane fusion protein (MFP) heavy metal cation efflux ZneB (CzcB-like); membrane fusion protein, Structural Genomics, PSI-2, Protein Structure Initiative, Center for Structures of Membrane Proteins, CSMP; 2.796A {Cupriavidus metallidurans}
Probab=35.30 E-value=1.8e+02 Score=23.96 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCe-eEEEEEcCCCCcEEEEEEe
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQI-IAKVGRLNSGSSMLHLEIY 100 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~-Ig~vG~l~~~~~MLHfE~Y 100 (133)
.|.||.||+|... . .|+.|.+|+. |+.+.. ...+.++++
T Consensus 172 ~i~Ap~~G~V~~~------------------------------~~~~g~~v~~~~~~l~~i~~----~~~~~v~~~ 213 (359)
T 3LNN_A 172 AVRSPINGRVVDL------------------------------NAATGAYWNDTTASLMTVAD----LSHVFVTAN 213 (359)
T ss_dssp EEECSSCEEEEEC------------------------------CCCBTCEECCSSCCSEEEEC----CSEEEEEEE
T ss_pred EEECCCCeEEEEE------------------------------eccCCceecCCCCceEEEEe----CCcEEEEEE
No 164
>6XYW_Aw 50S ribosomal protein L27; Ribosome, Mitochondria, Plant; 3.86A {Arabidopsis thaliana}
Probab=34.16 E-value=1.2e+02 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEEECCCcccCCccEEEEEe
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRH 55 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H 55 (133)
|.-| +.|.|.-..-.....++|..||+|.-. ..+..+--.|.|..
T Consensus 84 rQrg~~~~PG~NV~~Grd~tL~Al~~G~V~ft-~e~~~~r~~v~V~p 129 (154)
T 6XYW_Aw 84 RQRGTRFHPGDYVGIGKDHTLFALKEGRVRFE-KSKITGRKWIHVDP 129 (154)
T ss_pred EecCCcccCCCcceecCCCcEEeccCeEEEEE-eCCCCCcEEEEEec
No 165
>5CSK_B Acetyl-CoA carboxylase; acetyl-CoA carboxylase, LIGASE; 3.1A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=34.03 E-value=73 Score=35.43 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEc
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRL 88 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l 88 (133)
...|.||..|+|++. . .|+.|++||.++.+-.|
T Consensus 679 ~~~l~aPmpG~vv~v------------------------------~V~~G~~V~~g~~~~~~EaM 713 (2218)
T 5CSK_B 679 PTQLRTPSPGKLVKF------------------------------LVENGEHIIKGQPYAEIEVM 713 (2218)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCceeccCCCceEEE------------------------------EecCCCeEeCCCceEEEEEe
No 166
>1YW6_A Succinylglutamate desuccinylase; alpha-beta protein., Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, HYDROLASE; HET: SO4, MSE; 3.1A {Escherichia coli} SCOP: l.1.1.1, c.56.5.7
Probab=33.21 E-value=42 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred C-CC----CeecCCCeeEEEE
Q FD01845354_014 71 T-GG----SSVKKGQIIAKVG 86 (133)
Q Consensus 71 v-~G----~~V~~GQ~Ig~vG 86 (133)
+ .| +.|++||+||.+.
T Consensus 273 ~~~g~~~~~~V~~G~~lg~~~ 293 (335)
T 1YW6_A 273 MASDTLNFMPFEKGTLLAQDG 293 (335)
T ss_dssp SCTTCCBTCEEETTCBCEECS
T ss_pred cCCCCCCceecCCCcEEEEcC
No 167
>2AUJ_D DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, TRANSFERASE; 2.7A {Thermus aquaticus}
Probab=32.83 E-value=1.8e+02 Score=24.97 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecC--CCCC-CCCeecCCCeeEE
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIAN--GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~--~~~v-~G~~V~~GQ~Ig~ 84 (133)
+...+|+|+.+|+|.-. ..-...+..+ -..+..+-.| .+.. ...+ .|+.|++|+.|+.
T Consensus 100 ~~~~~i~a~~sG~V~~~-~~~~g~~i~i-~~~~~~~~~y-~lp~~~~l~v~~g~~V~~g~~l~~ 160 (309)
T 2AUJ_D 100 SEPYLFRAEESGVVELK-DLAEGHLIYL-RQEEEVVARY-FLPAGMTPLVVEGEIVEVGQPLAE 160 (309)
T ss_dssp SSCBCCBCSSCEEEEEE-EETTEEEEEE-EETTEEEEEE-EECEEECCCSCTTCEECTTCBCCC
T ss_pred CCCCcEEeCCCeEEEEE-ECCCCeEEEE-CCCCcEEEEE-ECCCCCeeEeCCCCeecCCCeEEE
No 168
>PF18298.5 ; NusG_add ; NusG additional domain
Probab=32.70 E-value=56 Score=25.77 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred eEEEecCeEEEECCCcc-----------cCCccEEEEEeCCEEEEEEEecC-CCCC-CCCeecCCCeeEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSF-----------YSGTSAVEIRHGELILRYGEIAN-GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~F-----------Y~gT~ai~I~H~~~i~RYGEi~~-~~~v-~G~~V~~GQ~Ig~ 84 (133)
++.+-.||+|++. .+| |.-||.|- |=.. -.++ .|.+|++|-+|..
T Consensus 4 ~~~~~~dg~I~ei-~n~rrIiIEt~drk~~ktY~IP-----------es~~i~~gIrvG~kir~G~PLt~ 61 (109)
T A8F4F5_PSELT/8 4 PIHARHSGVVVNV-KNYRKVTVETIDRKYSKTYFLP-----------EGSKLETGIKIGARIKQGMPLTK 61 (109)
T ss_pred CccccCCeEEEEe-eeeeEEEEEcCCCCcEEEEEec-----------CCCCcCCCccCCCcccCCCcccC
No 169
>7ZC6_C RnfC; Rnf, flavin, iron-sulfur cluster, sodium ion translocation, anaerobic energy metabolism, oxidoreductase, electron transport, redox-coupled sodium pump; HET: FMN, SF4, RBF; 4.27A {Clostridium tetanomorphum}
Probab=32.29 E-value=1e+02 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCCCeEEEecCeEEEECCCcc----cCCccEEEEEeCC
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSF----YSGTSAVEIRHGE 57 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~F----Y~gT~ai~I~H~~ 57 (133)
..+.+|+||.+|+|... ..+ -.-+.+|.|+...
T Consensus 67 ~~~~~v~spvsG~V~~i-~~~~~~~~~~~~~i~i~~~~ 103 (435)
T 7ZC6_C 67 FVSANIHASVSGTVKNV-APVTLFNGVKSTAVIIENDG 103 (435)
T ss_dssp SSCCCCBCSSCEEEEEC-CCEECTTCCEECEEEEEECS
T ss_pred CCcCcEecCCCEEEecc-cceecCCCCcccEEEEecCC
No 170
>8H3V_B DNA-directed RNA polymerase subunit beta'; transcription activation complex, coordinated regulation, TRANSCRIPTION; 4.5A {Anabaena}
Probab=30.97 E-value=1.9e+02 Score=31.17 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cccceeccCCCCCeEEEecCeEEEECCCcc-------cCCccEEEEEeCC-EEEEEEE------------ecC--CCCC-
Q FD01845354_014 15 KHAGCDLKFPPGTPIYAVADGVLVRNPYSF-------YSGTSAVEIRHGE-LILRYGE------------IAN--GSYT- 71 (133)
Q Consensus 15 ~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~F-------Y~gT~ai~I~H~~-~i~RYGE------------i~~--~~~v- 71 (133)
.|.|-=.-...-..|+|+.+|+|.-. ... ..|-.++.+.... +++.=.. |.. ...+
T Consensus 335 FHtgGv~~~~~~~~i~a~~~g~i~~~-~~~~~~~~rt~~G~~~~~~~~~~~l~I~~~~~~~~~~~~~~~~Ip~gS~L~Vk 413 (1350)
T 8H3V_B 335 FHTGGVFTGEVAQQVRSKMDGTIKLP-RKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEIHVTQGSTIYIV 413 (1350)
T ss_dssp ------------CCSCCSCSSCCCCS-SCCCCCSSSCCSSSCCCCCCCCCCCCSSCCSSCCSCCSSSCCCCCCCCCCCCC
T ss_pred ccccCcccccceeeEeccCccEEEeC-cccceeeeEccCCceEEEEecceEEEEeeCCCCCCCCCcEEEEEcCCCEEEEe
Q ss_pred CCCeecCCCeeEEE
Q FD01845354_014 72 GGSSVKKGQIIAKV 85 (133)
Q Consensus 72 ~G~~V~~GQ~Ig~v 85 (133)
.|+.|++||+|+..
T Consensus 414 nGq~VkkgqlLaE~ 427 (1350)
T 8H3V_B 414 DGQQVKKGQLLAEV 427 (1350)
T ss_dssp CCCSSSSCSCCCSC
T ss_pred CCceeecCCEEEEe
No 171
>7B9K_T Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Multienzyme complexes, oxoacid dehydrogenase complexes, lipoic acid, dihydrolipoyllysine, TRANSFERASE; HET: LA2; 3.16A {Escherichia coli (strain K12)}
Probab=30.88 E-value=1.1e+02 Score=28.02 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVG 86 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG 86 (133)
.|.||.||+|... . .|+.|..||+|+.+.
T Consensus 249 ~i~Ap~~G~v~~~------------------------------~~~~G~~v~~g~~l~~i~ 279 (630)
T 7B9K_T 249 EVPAPFAGVVKEL------------------------------KVNVGDKVKTGSLIMIFE 279 (630)
T ss_dssp EECCSSCEEECCC------------------------------CSCTTCEESSSCCCBCEE
T ss_pred EEeCCCCeEEeEE------------------------------EecCCCeecCCCEEEEEE
No 172
>5CSA_A Acetyl-CoA carboxylase; acetyl-CoA carboxylase, LIGASE; 3.0A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
Probab=30.75 E-value=99 Score=30.50 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEc
Q FD01845354_014 25 PGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRL 88 (133)
Q Consensus 25 ~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l 88 (133)
....|.||..|+|++. . .|+.|++||+++.+-.+
T Consensus 131 ~~~~v~ap~pG~v~~~------------------------------~v~~G~~v~~G~~~~~~e~m 166 (932)
T 5CSA_A 131 DPTQLRTPSPGKLVKF------------------------------LVENGEHIIKGQPYAEIEVM 166 (932)
T ss_dssp CTTEEECSSCEEEEEE------------------------------SSCTTCEECTTCEEEEEEET
T ss_pred CCceEEeCCCCcEEEE------------------------------EEeCCCeeeCCcceEEeEhh
No 173
>2AUJ_D DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, TRANSFERASE; 2.7A {Thermus aquaticus}
Probab=30.74 E-value=2.6e+02 Score=24.10 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecC---CCCC-CCCeecCCCeeEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIAN---GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~---~~~v-~G~~V~~GQ~Ig~ 84 (133)
.++|+.+|+|.-.... .+++...-..+ ...+ .|+.|++|++|+.
T Consensus 230 ~~~~~~~G~v~~~~~~-------------~i~i~~~~~i~~~~~l~V~~G~~V~~G~~L~~ 277 (309)
T 2AUJ_D 230 EVIAEAEGVVHLHEPA-------------SILVVKARVYPFEDDVEVTTGDRVAPGDVLAD 277 (309)
T ss_dssp CEECSSSEEEEEEEEE-------------EEEEESEEEEECSSCBSCCTTCCBCTTCEEET
T ss_pred eeEecccEEEEEcCCC-------------eEEEEeeEEcCCCCcEEeCCCCEECCCCEEEE
No 174
>6G2I_B Acetyl-CoA carboxylase 1; Filament, Helical, Multienzyme, Ligase, Biotin-dependent carboxylase; HET: SEP;{Homo sapiens}
Probab=30.40 E-value=1.1e+02 Score=34.62 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEc
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRL 88 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l 88 (133)
...+.|.||..|+|++. . .|+.|++||+++.+-.+
T Consensus 749 ~~~~~l~aPmpG~vv~~------------------------------~v~~G~~V~~G~~~~~iEam 785 (2346)
T 6G2I_B 749 NDPSVMRSPSAGKLIQY------------------------------IVEDGGHVFAGQCYAEIEVM 785 (2346)
T ss_dssp ---CEEECCCCSEEEEC------------------------------SSCTTCEECTTCEEEEEEBT
T ss_pred CCCCeeeCCCCCceEEE------------------------------EecCCCeeeCCCeeEEEEEc
No 175
>8A22_Au bL27m; mitoribosome, ribosome, mitochondria, polytomella, fragmentation, rrna, evolution, translation; HET: K, ATP, MG; 2.91A {Polytomella magna}
Probab=30.25 E-value=80 Score=25.62 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|+|-..+--....++|..||+|
T Consensus 28 rQrg~k~~PG~NVg~GkD~TL~Al~~G~V 56 (142)
T 8A22_Au 28 RQKQGIYSPGYNVGRGRDYTIFAKTVGYV 56 (142)
T ss_pred EecCCcccCCCccccCCCCeEEeCccEEE
No 176
>2K33_A AcrA; glycoprotein, N-glycan, glycosylation, MEMBRANE PROTEIN, TRANSPORT PROTEIN; HET: B6D, A2G, BGC; NMR {Campylobacter jejuni}
Probab=28.94 E-value=2.3e+02 Score=18.96 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCe-eEEEEEcCC
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQI-IAKVGRLNS 90 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~-Ig~vG~l~~ 90 (133)
..+.|+.+|+|... . .|+.+..|+. ++.+.....
T Consensus 68 ~~~~a~~~g~v~~~------------------------------~~~~g~~~~~~~~~l~~i~~~~~ 104 (116)
T 2K33_A 68 TEIKAPFDGTIGDA------------------------------LVNIGDYVSASTTELVRVTNLNP 104 (116)
T ss_dssp EEEECSSSEEECCC------------------------------SSCTTCEECSTTCCSEEEESSCC
T ss_pred CEEEcCCCeEEeeE------------------------------EecCCCeecCCCCeEEEEEeCCc
No 177
>2K33_A AcrA; glycoprotein, N-glycan, glycosylation, MEMBRANE PROTEIN, TRANSPORT PROTEIN; HET: B6D, A2G, BGC; NMR {Campylobacter jejuni}
Probab=28.19 E-value=1e+02 Score=20.64 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++|++|..+
T Consensus 17 ~~~g~~v~~g~~l~~~ 32 (116)
T 2K33_A 17 FKAGDKVKKGQTLFII 32 (116)
T ss_dssp CCTTCEECTTCEEEEE
T ss_pred cCCCCeEcCCCEEEEE
No 178
>5MMI_X plastid ribosomal protein bL27c; chloroplast, translation, ribosome, cryo-EM; HET: MG; 3.25A {Spinacia oleracea}
Probab=27.98 E-value=94 Score=26.66 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|.-| +.|+|--..--....++|..||+|
T Consensus 95 RQrGtk~hPG~NV~lGkD~TL~Al~dG~V 123 (194)
T 5MMI_X 95 RQRGTKFHPGKNVGIGKDHTIFALIDGLV 123 (194)
T ss_pred eecCCCcCCCCCcccccCceEEeecCEEE
No 179
>8SGY_V propionyl-CoA carboxylase; Multienzyme complex, carboxylase, LIGASE; HET: BTI; 8.62A {Leishmania tarentolae}
Probab=27.91 E-value=1.8e+02 Score=26.73 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEc
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRL 88 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l 88 (133)
......|.||..|+|+.. . .|+.|++||++..+..+
T Consensus 585 ~~~~~~~~a~~~g~v~~~------------------------------~~~~G~~v~~g~~l~~~~~~ 622 (657)
T 8SGY_V 585 TTNTKQILSPMPGVIVAI------------------------------KVQPGQMVVAGEELLTLEAM 622 (657)
T ss_dssp CCCCSCBCCSSCCEEEEE------------------------------CSCTTSBCCTTEECEEEECS
T ss_pred cCCceEEEccCCceEEEE------------------------------EeCCCCEEeCCCEEEEEEcC
No 180
>2XHA_B TRANSCRIPTION ANTITERMINATION PROTEIN NUSG; TRANSCRIPTION; HET: ACT; 1.906A {THERMOTOGA MARITIMA}
Probab=27.50 E-value=4.7e+02 Score=20.60 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC--CCC--C-CCCeecCCCeeEEEEEcCC-CCcEEEEEEe
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN--GSY--T-GGSSVKKGQIIAKVGRLNS-GSSMLHLEIY 100 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~--~~~--v-~G~~V~~GQ~Ig~vG~l~~-~~~MLHfE~Y 100 (133)
.+++..+|.|... . ..+.+.+.+.. ..-.| ++.. ... + .|+.|++|++|+.-..... ..-.++|..|
T Consensus 102 ~~~~~~~G~i~~~-~----~~~~i~i~~~~~~~~~~-~~~~~~~~~~~v~~g~~V~~G~~l~~~~~~~~~~~G~~~~~~~ 175 (193)
T 2XHA_B 102 EYICELDGKIVEI-E----RMKKVVVQTPDGEQDVY-YIPLDVFDRDRIKKGKEVKQGEMLAEARKFFAKVSGRVEVVDY 175 (193)
T ss_dssp CCBCCSSEEEEEE-E----EEEEEEEECTTSCEEEE-EEEGGGCCTTTSSTTCEECTTCEEECCEEEECSSCEEEEEEEC
T ss_pred ceEeeeCeEEEEE-c----CceEEEEECCCCCEEEE-EeeCCccccccccCCCEEcCCCcccccccchhhccCeeeEEec
Q ss_pred cC
Q FD01845354_014 101 TN 102 (133)
Q Consensus 101 ~g 102 (133)
.+
T Consensus 176 ~~ 177 (193)
T 2XHA_B 176 ST 177 (193)
T ss_dssp SS
T ss_pred CC
No 181
>2DN8_A acetyl-CoA carboxylase 2; Biotin required enzyme, Transcarboxylase, Acetyl CoA Carboxylase, Structural Genomics, NPPSFA, National Project on Protein Structural and; NMR {Homo sapiens}
Probab=27.05 E-value=2e+02 Score=17.78 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred cccCCccEEEEEeCC-EEEEEEEecC---CCCC-CCCeecCCCeeEEE
Q FD01845354_014 43 SFYSGTSAVEIRHGE-LILRYGEIAN---GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 43 ~FY~gT~ai~I~H~~-~i~RYGEi~~---~~~v-~G~~V~~GQ~Ig~v 85 (133)
.++-......+.... -...+..... .... .|+.|++||+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~ 48 (100)
T 2DN8_A 1 GSSGSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEM 48 (100)
T ss_dssp CCCCCCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEE
T ss_pred CCccccceEEEeCCCCCeEEECCCCeEEEEEEeCCCCEEcCCCEEEEE
No 182
>2AUK_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, TRANSFERASE; 2.3A {Escherichia coli}
Probab=26.93 E-value=89 Score=23.68 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred C-CCCeecCCCeeEEE
Q FD01845354_014 71 T-GGSSVKKGQIIAKV 85 (133)
Q Consensus 71 v-~G~~V~~GQ~Ig~v 85 (133)
+ .|+.|++||+|+..
T Consensus 66 v~~G~~V~~g~~l~~~ 81 (190)
T 2AUK_A 66 KGDGEQVAGGETVANW 81 (190)
T ss_dssp SCTTCEECTTCEEEEC
T ss_pred eCCCCeecCCCeEEee
No 183
>4HR7_D Biotin carboxyl carrier protein of acetyl-CoA carboxylase; biotin carboxylase, biotin carboxyl carrier protein, acetyl-CoA carboxylase, protein-protein interaction, protein complex, protein interface, antibiotic target; HET: SO4; 2.495A {Escherichia coli} SCOP: b.84.1.1
Probab=26.87 E-value=3.8e+02 Score=19.94 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCCCeEEEecCeEE-----------EECCCcccCCccEEEEEeCC-EEEEEEEecC---CCCC-CCCeecCCCeeEEE
Q FD01845354_014 23 FPPGTPIYAVADGVL-----------VRNPYSFYSGTSAVEIRHGE-LILRYGEIAN---GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V-----------~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~---~~~v-~G~~V~~GQ~Ig~v 85 (133)
......|.|+..|.+ +......-.|.--..+.... ..--...+.. ...+ .|+.|..||++..+
T Consensus 97 ~~~~~~i~s~~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~i~~~~~~~~v~a~~~g~v~~~~~~~g~~v~~g~~l~~i 175 (176)
T 4HR7_D 97 EISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 175 (176)
T ss_dssp --CCEEEECSSCEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCceEEECCCeEEEEeCCCCCCCccccCCCeecCCCEEEEEEcCccceEEEcCCCcEEEEEEcCCCCeecCCCcEEEE
No 184
>PF05896.15 ; NQRA ; Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
Probab=26.58 E-value=1.4e+02 Score=24.18 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEE
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIR 54 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~ 54 (133)
..+.+++||.+|+|.......-....+|+|+
T Consensus 64 ~~~~~~~spv~G~V~~i~~~~g~~~~~v~I~ 94 (258)
T Q604Z5_METCA/2 64 NPGVNFTSPGAGVVKAINRGERRVLQSVVIE 94 (258)
T ss_pred CCccEEECCCCcEEEEEecCCCCeEEEEEEE
No 185
>6L06_G Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine, Phosphatidylethanolamine, Membrane, LYASE; HET: PYR; 2.6A {Escherichia coli BL21(DE3)}
Probab=26.31 E-value=67 Score=17.98 Aligned_cols=17 Identities=29% Similarity=0.050 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CCCC-CCCeecCCCeeEE
Q FD01845354_014 68 GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 68 ~~~v-~G~~V~~GQ~Ig~ 84 (133)
...+ .++.|+.||.|+.
T Consensus 15 ~~~l~~~~~v~~G~~l~~ 32 (36)
T 6L06_G 15 VEQLESLSVTKIGQPLAV 32 (36)
T ss_dssp CTTCCTTCEECTTSEEEE
T ss_pred cccccCCCEEECChhhhc
No 186
>8SYI_Z DNA-directed RNA polymerase subunit beta'; Transcription regulation RNAP NusG cryo-EM, TRANSCRIPTION;{Synechococcus elongatus}
Probab=26.05 E-value=3.2e+02 Score=29.64 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred eEEEecCeEEEECCCccc------CCccEEEEEeCC-EEEEEEEecC-----CCCC-CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFY------SGTSAVEIRHGE-LILRYGEIAN-----GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY------~gT~ai~I~H~~-~i~RYGEi~~-----~~~v-~G~~V~~GQ~Ig~v 85 (133)
+|+|..+|.|.-. .... .+-.......+. ++|-.|++-. ...+ .||.|++|++|++.
T Consensus 444 ~I~s~~sGeV~f~-~l~~~e~~dr~~n~~~~~~~~g~iWILsG~vy~lp~~a~l~vk~gd~v~~~~~la~t 513 (1318)
T 8SYI_Z 444 DVATDLAGEIRFQ-DIVPEEKTDRQGNTTRIAQRGGLLWVLAGDVYNLLPGAEPTVKNGDRVEVGDVLAET 513 (1318)
T ss_dssp EEECSSCEEEEES-SCCEEECCCSSCTTCEEESSCCEEEEECCEEEECCTTCCBCSCTTCEECTTCEEEEE
T ss_pred EeeecCCcceeee-cCCCcceecCCCCeeeeeeccCeEEEEeCcEEecCCCCcceecCCCEEcCCCeeeee
No 187
>8SYI_Z DNA-directed RNA polymerase subunit beta'; Transcription regulation RNAP NusG cryo-EM, TRANSCRIPTION;{Synechococcus elongatus}
Probab=25.71 E-value=1.6e+02 Score=31.71 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred EEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 29 IYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
+.++.+|.|+..... .|.++.+. +.+.-|-+.. + .|+.|++|+.|+.+
T Consensus 932 ~~~~~sG~i~~i~~~------~i~~r~~~pylis~ga~l~---v~~g~lV~kgd~L~tl 981 (1318)
T 8SYI_Z 932 IIAPESGEVRAIAPG------QLQLRIARPYRVSQGAVLH---VEDKGLVQRGDNLVLL 981 (1318)
T ss_dssp CCCSCCEEECCCCSS------BCCEEECCEEECCTTCBCC---SCTTCEECTTCEEEEE
T ss_pred cccCCCCcEEEecCC------eeEEEecCceecCCCCEEE---ecCCcEecCCCeEEEE
No 188
>7CNW_B Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase, pyruvoyl-dependent decarboxylase, auto-cleaved, serine protease, MEMBRANE PROTEIN, LYASE; HET: LMT, PYR; 1.9A {Escherichia coli K-12}
Probab=25.67 E-value=40 Score=21.12 Aligned_cols=17 Identities=29% Similarity=0.094 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CCC-CCCeecCCCeeEEE
Q FD01845354_014 69 SYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 69 ~~v-~G~~V~~GQ~Ig~v 85 (133)
..+ .|+.|+.||.|+..
T Consensus 16 ~~l~~g~~Vr~Gq~l~~~ 33 (42)
T 7CNW_B 16 EQLESLSVTKIGQPLAVS 33 (42)
T ss_dssp TTCCTTCEECTTSEEEEE
T ss_pred cccCCCCeEEcChHHHhh
No 189
>8F3D_H 3-methylcrotonyl-CoA carboxylase alpha-subunit; enzyme, multienzyme, multi-enzyme, biotin-dependent, leucine catabolism, PROTEIN FIBRIL, LIGASE; HET: BTI; 3.4A {Leishmania tarentolae}
Probab=25.60 E-value=2.2e+02 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCCCCeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEEEEc
Q FD01845354_014 23 FPPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKVGRL 88 (133)
Q Consensus 23 ~~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~vG~l 88 (133)
...+..|.||..|+|++. . .|+.|++||.+..+-.+
T Consensus 613 ~~~~~~~~~p~~g~v~~~------------------------------~~~~g~~v~~g~~l~~~eam 650 (687)
T 8F3D_H 613 GGTSTKIVSPMPGKVSKL------------------------------LVKSGDLVEKGQVLVIVEAM 650 (687)
T ss_dssp CCCSCBSCCCTTCCBCCC------------------------------CSCTTCBCCSCCCCCCBCSS
T ss_pred CCCcceEEeccCceEEEE------------------------------EecCCCeEeCCCEEEEEEcC
No 190
>6NU2_W 39S ribosomal protein L27, mitochondrial; mitochondrial ribosome recycling Factor, mtRRF, 55S, RIBOSOME; HET: MG; 3.9A {Homo sapiens}
Probab=25.07 E-value=1.4e+02 Score=22.49 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLV 38 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~ 38 (133)
|..| +.|.|.-..-.....++|..||+|.
T Consensus 36 ~q~~~~~~PG~nv~~g~d~tl~A~~~G~V~ 65 (115)
T 6NU2_W 36 TQRHFRWHPGAHVGVGKNKCLYALEEGIVR 65 (115)
T ss_dssp CCSSCCSCCCBSEECCSSSCEEECSSEEEE
T ss_pred ecCCCcccCCCCccCCCCCeEEeCcCeEEE
No 191
>6HIX_A0 bl27m; mitoribosome, translation, Trypanosoma, large ribosomal subunit, 12S rRNA, ribosomal protein, RIBOSOME; HET: NAD; 3.39A {Trypanosoma brucei brucei}
Probab=24.87 E-value=1.4e+02 Score=25.65 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=0.0 Template_Neff=4.600
Q ss_pred CCCCCCCCC--CcccceeccCCC-CCeEEEecCeEEE
Q FD01845354_014 5 QFRAPRSGG--RKHAGCDLKFPP-GTPIYAVADGVLV 38 (133)
Q Consensus 5 ~FGa~R~gG--R~HAg~DLy~~~-gt~V~Ai~dG~V~ 38 (133)
.||..|-.- +.|.|.-..-.. ...++|..+|+|.
T Consensus 52 ~~~~~~~~r~~k~~PG~NV~~gr~d~TL~Al~~G~V~ 88 (185)
T 6HIX_A0 52 RFGQDRHSRLPEYRPGNNVRMDPNTYTLYATKKGVMT 88 (185)
T ss_pred ccCCcccccCCcccCCCCceeCCCCCeEEcccceEEE
No 192
>8GZH_Z DNA-directed RNA polymerase subunit beta'; Cryo-EM, Synechocystis sp. PCC 6803, Syn6803, Transcription initiation, CTP-bound RPitc, Transcription, Cyanobacteria, TRANSCRIPTION-DNA-RNA complex; HET: CTP; 2.96A {Synechocystis sp. PCC 6803}
Probab=24.60 E-value=2.9e+02 Score=29.19 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred cccceeccCCCCCeEEEecCeEEEECCCcc-------cCCccEEEEEeCC-EEEEE----EEecC-------CCCC-CCC
Q FD01845354_014 15 KHAGCDLKFPPGTPIYAVADGVLVRNPYSF-------YSGTSAVEIRHGE-LILRY----GEIAN-------GSYT-GGS 74 (133)
Q Consensus 15 ~HAg~DLy~~~gt~V~Ai~dG~V~~~~~~F-------Y~gT~ai~I~H~~-~i~RY----GEi~~-------~~~v-~G~ 74 (133)
.|-|-=.-...-..++|+.+|.|.-. ..+ ..|..+..+.... +++.- .|... ...+ .|+
T Consensus 339 fH~~Gv~~~~~~~~~~~~~~g~v~~~-~~~~~~~~rt~~G~~~~~~~~~~~i~i~~~~~~~~~~~~~ip~gs~L~Vk~g~ 417 (1323)
T 8GZH_Z 339 FHTGGVFTGEVARQEKAPEDGTVKWG-KGLSTRKVRTRHGEDAEQVEIAGDLIWKGEGKKAATQTYSLTPGSLLFVQDGQ 417 (1323)
T ss_pred cccCCceeeceeeeeeCCCCCeEEEc-CCCccceEEcCCCCeeEEeeeccEEEEeCCCCcceEEEEEcCCCCEEEeCCCC
Q ss_pred eecCCCeeEEE
Q FD01845354_014 75 SVKKGQIIAKV 85 (133)
Q Consensus 75 ~V~~GQ~Ig~v 85 (133)
.|++||+|+..
T Consensus 418 ~V~~gq~Lae~ 428 (1323)
T 8GZH_Z 418 TVTAGQLMTEI 428 (1323)
T ss_pred eecCCCeEEEe
No 193
>5GUA_A 149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain; Surface engineering, Crystal packing, Crystal contact engineering, TRANSFERASE; 1.5A {Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)}
Probab=24.60 E-value=1.5e+02 Score=16.47 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred CCCeecCCCeeEEE
Q FD01845354_014 72 GGSSVKKGQIIAKV 85 (133)
Q Consensus 72 ~G~~V~~GQ~Ig~v 85 (133)
.|+.|.+|++|+.+
T Consensus 20 ~g~~~~~~~~~~~~ 33 (71)
T 5GUA_A 20 VGDRVRVGQGLLVL 33 (71)
T ss_dssp TTCEECTTCEEEEE
T ss_pred CCCEEcCCCEEEEE
No 194
>3BG3_C Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, Biotin, Disease mutation, Gluconeogenesis, Ligase, Lipid synthesis, Manganese, Mitochondrion, Multifunctional enzyme, Nucleotide-binding, Phosphoprotein; HET: KCX, BTI, PYR; 2.8A {Homo sapiens}
Probab=22.47 E-value=1.7e+02 Score=28.67 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CeEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 27 TPIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 27 t~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
+.|.||.+|+|... . .|+.|.+||+|+.+
T Consensus 687 ~~i~Ap~~G~V~~i------------------------------~v~~G~~V~~g~~l~~i 717 (718)
T 3BG3_C 687 TVVTSPMEGTVRKV------------------------------HVTKDMTLEGDDLILEI 717 (718)
T ss_dssp -------------------------------------------------------------
T ss_pred heEeCCCCcEEEEE------------------------------EcCCCCeecCCCEEEEE
No 195
>8H3V_B DNA-directed RNA polymerase subunit beta'; transcription activation complex, coordinated regulation, TRANSCRIPTION; 4.5A {Anabaena}
Probab=22.29 E-value=1.9e+02 Score=31.22 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred EEEecCeEEEECCCc-----------ccCCccEEEEEeCC-EEEEEEEecCCCCC-CCCeecCCCeeEEE
Q FD01845354_014 29 IYAVADGVLVRNPYS-----------FYSGTSAVEIRHGE-LILRYGEIANGSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 29 V~Ai~dG~V~~~~~~-----------FY~gT~ai~I~H~~-~i~RYGEi~~~~~v-~G~~V~~GQ~Ig~v 85 (133)
+.++.+|.|+.. .. --..+..|.++.+. +.+.-|-+.. + .|+.|++|+.|+.+
T Consensus 932 ~~~~~sGqIi~i-~~~~~~~~~~~~~~~~~~~~i~lR~~~pyl~s~~~~l~---v~~g~~v~~g~~l~~l 997 (1350)
T 8H3V_B 932 IFAEESGQIVGV-KNAGESTTTQDAALSTQNYAVTIRAGRPYRVSPGAVLQ---IEDGDLVQRGDNLVLL 997 (1350)
T ss_dssp BCCCCCSCCSBC-CC----------------CCCBCBCCCCCCCCSSEECC---CCSSEECCTTCCCCEE
T ss_pred CcCCCCceEEEe-ecCCCCCcccchhhccCCceeEEECCCceecCCCCEEE---eCCCCEecCCCeEEEE
No 196
>8I23_C DNA-directed RNA polymerase subunit beta; TRANSCRIPTION OPEN COMPLEX, SIGI, TRANSCRIPTION, TRANSCRIPTION-DNA complex;{Acetivibrio thermocellus DSM 1313}
Probab=22.25 E-value=4.1e+02 Score=28.13 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEE----------EecC-CCCC-CCCeecCCCeeEE
Q FD01845354_014 26 GTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYG----------EIAN-GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 26 gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYG----------Ei~~-~~~v-~G~~V~~GQ~Ig~ 84 (133)
+.-++|..+|+|..+ ..+.+.|.-.. -..-|- -..+ ...+ .|++|++||+|+.
T Consensus 693 ~~~~~a~~~g~v~~v------~~~~i~i~~~~~~~~~~~l~~~~~~n~~~~~~q~p~v~~g~~v~~g~~la~ 758 (1250)
T 8I23_C 693 GVVILAKNPGVVEKV------TANEIIIRTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIAD 758 (1250)
T ss_dssp TCSEECSSCCEEEEE------ETTEEEEECTTSCEEEEECCCSEECTTSCEECCCBCCCTTCBCCTTCEEEC
T ss_pred CCEEEeCCCceEEEE------eCCEEEEEeCCCcEEEEEeccceecCCCCcccccceecCCCeecCCCEEcc
No 197
>7QH7_W 39S ribosomal protein L27, mitochondrial; Mitochondria, Ribosome, Assembly, Methyltransferase, MRM2, RNA modification; HET: MG; 2.89A {Homo sapiens}
Probab=22.17 E-value=1.5e+02 Score=21.74 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVLV 38 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V~ 38 (133)
|..| +.|.|--..-.....++|..||+|.
T Consensus 21 rQ~~~~~~PG~nv~~g~d~tl~A~~~G~V~ 50 (100)
T 7QH7_W 21 TQRHFRWHPGAHVGVGKNKCLYALEEGIVR 50 (100)
T ss_dssp CCSSCSSEECBTEEECTTCCEEESSSEEEE
T ss_pred EcCCCcccCCCceEecCCCcEEeccCeEEE
No 198
>7CNW_A Phosphatidylserine decarboxylase beta chain; Phosphatidylserine decarboxylase, pyruvoyl-dependent decarboxylase, auto-cleaved, serine protease, MEMBRANE PROTEIN, LYASE; HET: LMT, PYR; 1.9A {Escherichia coli K-12}
Probab=21.91 E-value=1.1e+02 Score=25.69 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred EEEecCeEEEEC
Q FD01845354_014 29 IYAVADGVLVRN 40 (133)
Q Consensus 29 V~Ai~dG~V~~~ 40 (133)
|+||+||+|+..
T Consensus 85 ivSP~DG~v~~~ 96 (253)
T 7CNW_A 85 LVMPADGVISQL 96 (253)
T ss_dssp EECSSSEEEEEE
T ss_pred EEecCCceEEec
No 199
>5G51_A DWV-VP3-P-DOMAIN; VIRAL PROTEIN, PICORNAVIRALES, PICORNAVIRALES IFLAVIRIDAE IFLAVIRUS DWV CAPSID P-DOMAIN JELLYROLL INHIBITOR ANTIVIRAL CATALYTIC SITE PROTEASE LIPASE; 1.45A {DEFORMED WING VIRUS}
Probab=21.85 E-value=72 Score=25.53 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CcccCCccEEEEEeCC-EEEEEEEec
Q FD01845354_014 42 YSFYSGTSAVEIRHGE-LILRYGEIA 66 (133)
Q Consensus 42 ~~FY~gT~ai~I~H~~-~i~RYGEi~ 66 (133)
+.+|.|||.=.-. +. .|.|||+++
T Consensus 10 ~P~Y~GtWr~~~~-~~~~IlRyG~~S 34 (157)
T 5G51_A 10 APYYAGVWHSFNN-SNSLVFRWGSAS 34 (157)
T ss_dssp CSCEEECCTTTGG-GTBCEEESSSST
T ss_pred cCEEEEEEEEcCC-CCeEEEEecCcc
No 200
>8GZH_Z DNA-directed RNA polymerase subunit beta'; Cryo-EM, Synechocystis sp. PCC 6803, Syn6803, Transcription initiation, CTP-bound RPitc, Transcription, Cyanobacteria, TRANSCRIPTION-DNA-RNA complex; HET: CTP; 2.96A {Synechocystis sp. PCC 6803}
Probab=21.81 E-value=3.5e+02 Score=28.65 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCCeEEEecCeEEEECCCcccCCccEEEEEeCC-EEEEEEEecC--CCCC-CCCeecCCCeeE
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFYSGTSAVEIRHGE-LILRYGEIAN--GSYT-GGSSVKKGQIIA 83 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~-~i~RYGEi~~--~~~v-~G~~V~~GQ~Ig 83 (133)
+....++|..+|+|.-.... .+...|.|.... ....|= |.. ...+ .|+.|++||+|.
T Consensus 1001 ~~~~~~~~~~~G~v~~~~~~--~~~~~i~i~~~~~~~~~~~-i~~~~~l~V~~g~~V~~G~~Lt 1061 (1323)
T 8GZH_Z 1001 PKEACVLARAPGVCQVEYLE--DESVDIKVVEDDGTVSEYP-LLPGQNAMVTDGQRIDVGHALT 1061 (1323)
T ss_pred CCccceeeccCceEEEeecC--CCceEEEEEcCCCceeeee-cCCCCeeEecCCCeEeecceec
No 201
>2QF7_B Pyruvate carboxylase protein; MULTI-DOMAIN, MULTI-FUNCTIONAL, BIOTIN-DEPENDENT, Ligase; HET: KCX, COA, AGS; 2.0A {Rhizobium etli}
Probab=21.76 E-value=1.7e+02 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred eEEEecCeEEEECCCcccCCccEEEEEeCCEEEEEEEecCCCCC--CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTSAVEIRHGELILRYGEIANGSYT--GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~ai~I~H~~~i~RYGEi~~~~~v--~G~~V~~GQ~Ig~v 85 (133)
.|.|+..|+|... . .|+.|++||+|+.+
T Consensus 1097 ~v~ap~~G~V~~v------------------------------~v~~Gd~V~kG~~L~~l 1126 (1165)
T 2QF7_B 1097 HVGAPMPGVISRV------------------------------FVSSGQAVNAGDVLVSI 1126 (1165)
T ss_dssp ------------------------------------------------------------
T ss_pred eeeCCCCcEEEEE------------------------------eCCCCCeecCCcEEEEE
No 202
>8H3V_B DNA-directed RNA polymerase subunit beta'; transcription activation complex, coordinated regulation, TRANSCRIPTION; 4.5A {Anabaena}
Probab=21.75 E-value=3.9e+02 Score=29.05 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCCCeEEEecCeEEEECCCccc---CCccEEEEEeCC-EEEEEEEecC-CCCC-CCCeecCCCee
Q FD01845354_014 24 PPGTPIYAVADGVLVRNPYSFY---SGTSAVEIRHGE-LILRYGEIAN-GSYT-GGSSVKKGQII 82 (133)
Q Consensus 24 ~~gt~V~Ai~dG~V~~~~~~FY---~gT~ai~I~H~~-~i~RYGEi~~-~~~v-~G~~V~~GQ~I 82 (133)
+....++|+.+|+|... + .++..+.|.... .+..|--... ...+ .|+.|++||+|
T Consensus 1023 ~~~~~~la~~~G~v~~~----~~~~~~~~~i~i~~~~~~~~~y~i~~~~~l~v~~g~~V~~G~~L 1083 (1350)
T 8H3V_B 1023 PKEACILAKRGGEVKVV----YGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPL 1083 (1350)
T ss_dssp GGGCCCCCCSCCSCCTT----TSSSCCSSCCCCCCSSSSCCCCCCCCSSSCCCCCSCCCSSSSCS
T ss_pred CCcceEEEeeCCEEEEE----eCCCCCeEEEEEEcCCCeEEEeccCCCCceeccCCCeeCCCCCC
No 203
>1C5E_C HEAD DECORATION PROTEIN; BACTERIOPHAGE LAMBDA, HEAD PROTEIN D, PROTEIN CRYSTAL STRUCTURE, VIRUS ASSEMBLY, PHAGE DISPLAY, Viral protein; HET: GOL; 1.1A {Enterobacteria phage lambda} SCOP: b.85.2.1
Probab=21.51 E-value=1.2e+02 Score=21.48 Aligned_cols=18 Identities=0% Similarity=-0.309 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCCC-CCCeecCCCeeEEE
Q FD01845354_014 68 GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 68 ~~~v-~G~~V~~GQ~Ig~v 85 (133)
...+ .|+.+++|++|+++
T Consensus 8 ~v~~~~g~~~~~Gtvl~~~ 26 (95)
T 1C5E_C 8 TAPGGLSAKAPAMTPLMLD 26 (95)
T ss_dssp EEEBCCSSCBCTTCEEEEC
T ss_pred eeccccCCccCCCCeEEEE
No 204
>8GZH_Z DNA-directed RNA polymerase subunit beta'; Cryo-EM, Synechocystis sp. PCC 6803, Syn6803, Transcription initiation, CTP-bound RPitc, Transcription, Cyanobacteria, TRANSCRIPTION-DNA-RNA complex; HET: CTP; 2.96A {Synechocystis sp. PCC 6803}
Probab=21.49 E-value=5e+02 Score=27.57 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred eEEEecCeEEEECCCcccCCcc------EEEEEeCC-EEEEEEEecC-----CCCC-CCCeecCCCeeEEE
Q FD01845354_014 28 PIYAVADGVLVRNPYSFYSGTS------AVEIRHGE-LILRYGEIAN-----GSYT-GGSSVKKGQIIAKV 85 (133)
Q Consensus 28 ~V~Ai~dG~V~~~~~~FY~gT~------ai~I~H~~-~i~RYGEi~~-----~~~v-~G~~V~~GQ~Ig~v 85 (133)
+|+|+.+|.|.-. ........ ........ ++|.+|++-. ...+ .||.|.+|++|+++
T Consensus 443 ~i~s~~sG~v~~~-~~~~~~~~~~~~~~~~~~~~~~~iwilsg~~~~~p~~~~~~~~~gd~v~~~~~la~~ 512 (1323)
T 8GZH_Z 443 DVAGDLAGEVLFD-RLVPEEKTDRQGNTTRIAQRGGLVWILSGEVYNLPPGAEPVVKNDEQVEVGSIMAET 512 (1323)
T ss_pred eeEecCcceEEEe-ccCccceecCCCCeeeeeecCCeEEEEeCceeecCCCCccccCCCCEecCCcceeee
No 205
>5N9J_Y Mediator of RNA polymerase II transcription subunit 20; Transcription, RNA polymerase II; 3.4A {Schizosaccharomyces pombe}
Probab=21.00 E-value=4e+02 Score=21.84 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCCCCCCCCCCcccceeccCCCCCe----------------EEEecCeEEEECCCcc---------cCCccEEEEE----
Q FD01845354_014 4 RQFRAPRSGGRKHAGCDLKFPPGTP----------------IYAVADGVLVRNPYSF---------YSGTSAVEIR---- 54 (133)
Q Consensus 4 r~FGa~R~gGR~HAg~DLy~~~gt~----------------V~Ai~dG~V~~~~~~F---------Y~gT~ai~I~---- 54 (133)
+.+|+.+. |+.+.-|.+|.+.-++ +. .++.|+.....| |.-..++.|+
T Consensus 27 ~~~~a~~~-g~w~v~~~~yr~~~~~~~~~~l~~l~~P~~~fl~--~~~~vv~ad~~f~~ll~kl~~w~~r~~~~ieG~~y 103 (193)
T 5N9J_Y 27 RTYFAQHL-KKWVVQYKLYRNAVTPKTLEFLKQNINPSMLACV--DEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIY 103 (193)
T ss_dssp HHHCCEEE-EEEEEEEEEEECTTCCEEEEEEESTTTTSEEEEE--TTTEEEEECHHHHHHHHHHCCSCCCCEEEEEEEEE
T ss_pred HhcCCeec-CeEEEEEEEEecCCCCCccceEEEEcCCCCEEEE--cCCceEecCHHHHHHHHHhcccccceeEEEEeeEE
Q ss_pred -eCCEEEEEEEe
Q FD01845354_014 55 -HGELILRYGEI 65 (133)
Q Consensus 55 -H~~~i~RYGEi 65 (133)
.|+|+||.|+|
T Consensus 104 ~lgDF~VRiG~v 115 (193)
T 5N9J_Y 104 EVGSFKVAIANV 115 (193)
T ss_dssp EETTEEEEEEEE
T ss_pred EECcEEEEEEEE
No 206
>2AUJ_D DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, TRANSFERASE; 2.7A {Thermus aquaticus}
Probab=20.50 E-value=1.5e+02 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEEEEEecC--CCCC-CCCeecCCCeeEE
Q FD01845354_014 59 ILRYGEIAN--GSYT-GGSSVKKGQIIAK 84 (133)
Q Consensus 59 i~RYGEi~~--~~~v-~G~~V~~GQ~Ig~ 84 (133)
..+| .+.. ...+ .|+.|++||+|+.
T Consensus 20 ~~~~-~~p~g~~l~v~~g~~V~~g~ila~ 47 (309)
T 2AUJ_D 20 QETY-PLPAGVDALVKDGEEVVKGQELAP 47 (309)
T ss_dssp EEEE-ECCTTCCCSSCTTCEECTTCBSSS
T ss_pred eeEE-ecCCCCEEEECCCCEECCCCEEee
No 207
>6Z1P_AA 50S ribosomal protein L27; Mitochondrial ribosome, ribosome, mitochondria, ciliate, tetrahymena; HET: ATP, MG; 3.7A {Tetrahymena thermophila (strain SB210)}
Probab=20.37 E-value=1.5e+02 Score=26.47 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred CCCC-CcccceeccCCCCCeEEEecCeEE
Q FD01845354_014 10 RSGG-RKHAGCDLKFPPGTPIYAVADGVL 37 (133)
Q Consensus 10 R~gG-R~HAg~DLy~~~gt~V~Ai~dG~V 37 (133)
|..| +.|.|--.+--....++|..||+|
T Consensus 68 RQrGtk~hPG~NVgiGrDhTL~Al~dG~V 96 (237)
T 6Z1P_AA 68 RQRGFKWHAGQNTYVGKDHTIHSKVEGHV 96 (237)
T ss_pred eccCCcccCCCCceeCCCCeEEECcceEE