Query FD01543185_03952 RHS repeat family protein
Match_columns 68
No_of_seqs 100 out of 120
Neff 5.42173
Searched_HMMs 86581
Date Tue Feb 27 20:27:19 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4528092.hhr -oa3m ../results/4528092.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3FOV_A UPF0102 protein RPA0323 98.6 2.1E-07 2.5E-12 58.7 6.0 51 2-57 21-71 (134)
2 PF02021.21 ; UPF0102 ; Unchara 98.6 2.6E-07 3E-12 54.1 5.4 46 7-57 1-46 (91)
3 2WCW_C HJC; TYPE II RESTRICTIO 98.2 5.1E-06 5.9E-11 51.8 4.1 55 2-59 6-61 (139)
4 PF18743.5 ; AHJR-like ; REase_ 98.2 2.9E-06 3.4E-11 53.0 2.9 54 3-57 8-63 (125)
5 1GEF_D HOLLIDAY JUNCTION RESOL 98.1 9.5E-06 1.1E-10 50.0 4.6 57 1-65 2-61 (123)
6 4TKD_C Holliday junction resol 98.0 1.2E-05 1.3E-10 51.1 3.5 61 1-65 5-70 (141)
7 1OB8_B HOLLIDAY-JUNCTION RESOL 97.9 2.6E-05 3.1E-10 49.6 3.9 61 1-65 3-67 (135)
8 6XL1_A Card1; Cad1, Dnase, cyc 97.9 0.0001 1.2E-09 53.7 6.2 54 3-57 254-312 (382)
9 PF01870.22 ; Hjc ; Archaeal ho 97.7 0.00018 2E-09 40.8 4.4 52 6-65 1-55 (87)
10 3DNX_A uncharacterized protein 97.4 0.0013 1.5E-08 43.1 6.5 46 8-57 17-62 (153)
11 PF06319.16 ; MmcB-like ; DNA r 97.4 0.0011 1.2E-08 43.4 5.9 46 8-57 18-63 (148)
12 1XMX_A hypothetical protein VC 97.4 0.0013 1.5E-08 47.6 6.8 54 3-57 250-312 (385)
13 PF09002.15 ; DUF1887 ; Domain 97.4 0.0011 1.2E-08 48.0 6.2 54 3-57 248-310 (380)
14 PF11645.12 ; PDDEXK_5 ; PD-(D/ 97.4 0.0018 2.1E-08 40.3 6.1 49 1-56 4-52 (132)
15 8BAO_B DUF1887 family protein; 97.3 0.0017 1.9E-08 47.8 6.5 54 3-57 255-311 (387)
16 7BGS_A Holliday junction resol 97.3 0.00091 1.1E-08 45.7 4.8 56 1-61 3-62 (163)
17 7BDV_D Can2; CRISPR, cyclic te 97.3 0.0013 1.5E-08 47.6 5.2 54 3-57 238-295 (366)
18 PF20472.2 ; PDDEXK_11 ; PD-(D/ 97.2 0.0025 2.9E-08 42.9 5.6 53 3-55 5-76 (155)
19 2OST_A Putative endonuclease; 97.1 0.0029 3.4E-08 40.3 5.2 50 1-57 5-54 (151)
20 PF06250.15 ; YhcG_C ; YhcG PDD 97.1 0.0019 2.2E-08 41.1 4.0 48 18-65 41-90 (157)
21 PF02646.20 ; RmuC ; RmuC famil 96.9 0.0075 8.7E-08 44.2 6.7 56 1-56 65-124 (299)
22 PF08378.15 ; NERD ; Nuclease-r 96.9 0.021 2.5E-07 34.4 7.3 52 3-56 1-55 (121)
23 4QBN_A Nuclease; Nuclease, HYD 96.8 0.0073 8.4E-08 35.3 4.9 58 5-66 5-63 (93)
24 8Q42_A DUF1887 family protein; 96.8 0.006 7E-08 46.0 5.5 53 3-57 301-362 (439)
25 PF10107.13 ; Endonuc_Holl ; En 96.8 0.0016 1.8E-08 45.3 1.8 29 38-67 107-142 (159)
26 2VLD_B Endonuclease NucS; ENDO 96.7 0.016 1.8E-07 41.7 6.5 46 8-57 127-178 (251)
27 PF01939.20 ; NucS_C ; Endonucl 96.7 0.011 1.3E-07 36.1 5.0 35 19-57 19-53 (121)
28 1Y88_A Hypothetical protein AF 96.6 0.037 4.3E-07 36.7 7.5 54 1-56 14-67 (199)
29 5GKE_A Endonuclease EndoMS; EN 96.5 0.026 3E-07 40.7 6.6 46 8-57 132-183 (252)
30 4QBO_A Nuclease; nuclease, HYD 96.3 0.006 6.9E-08 36.0 2.0 28 38-66 33-60 (92)
31 PF03749.17 ; SfsA ; Sugar ferm 96.2 0.041 4.8E-07 36.4 6.0 44 9-56 5-55 (141)
32 6SCE_A Uncharacterized protein 96.1 0.017 2E-07 46.4 4.1 52 3-57 497-560 (638)
33 PF13635.10 ; DUF4143 ; Domain 95.9 0.078 9E-07 33.2 5.9 53 4-57 114-167 (167)
34 PF03838.18 ; RecU ; Recombinat 95.6 0.035 4E-07 37.2 3.6 62 3-65 1-86 (161)
35 1ZP7_B Recombination protein U 95.6 0.087 1E-06 36.9 5.6 61 1-65 29-120 (206)
36 4DAP_A Sugar fermentation stim 95.4 0.16 1.8E-06 36.5 6.6 46 8-56 86-138 (234)
37 PF20366.2 ; DUF6661 ; Family o 95.4 0.034 3.9E-07 38.1 3.0 18 38-56 17-34 (174)
38 4DA2_A Sugar fermentation stim 95.3 0.13 1.6E-06 36.9 6.0 44 8-56 85-134 (231)
39 PF14281.10 ; PDDEXK_4 ; PD-(D/ 95.3 0.1 1.2E-06 34.1 4.9 63 1-65 30-97 (173)
40 PF03008.18 ; DUF234 ; Archaea 95.0 0.19 2.2E-06 30.5 5.2 61 4-64 34-100 (101)
41 PF09572.14 ; RE_XamI ; XamI re 95.0 0.29 3.4E-06 36.5 7.0 57 8-64 126-209 (257)
42 PF13156.10 ; Mrr_cat_2 ; Restr 95.0 0.11 1.3E-06 29.8 3.9 45 3-55 3-48 (125)
43 2INB_A hypothetical protein; Z 94.8 0.034 4E-07 37.4 1.7 52 5-56 6-62 (140)
44 PF08774.15 ; VRR_NUC ; VRR-NUC 94.6 0.049 5.7E-07 33.8 2.0 29 38-66 65-107 (127)
45 PF08814.14 ; XisH ; XisH prote 94.5 0.043 5E-07 36.5 1.7 52 5-56 5-61 (132)
46 PF07788.15 ; PDDEXK_10 ; PD-(D 94.1 0.19 2.2E-06 29.1 3.5 19 36-56 3-21 (74)
47 5Y7Q_A Fanconi-associated nucl 93.9 0.078 9E-07 42.0 2.2 29 38-66 527-556 (580)
48 PF06356.15 ; DUF1064 ; Protein 93.6 0.92 1.1E-05 28.9 6.3 55 6-61 19-96 (120)
49 PF09520.14 ; RE_TdeIII ; Type 93.6 0.59 6.8E-06 33.4 5.9 54 4-57 56-152 (240)
50 4REC_A Fanconi-associated nucl 93.5 0.09 1E-06 41.7 2.0 29 38-66 589-618 (647)
51 PF04471.16 ; Mrr_cat ; Restric 93.0 1 1.2E-05 25.7 5.4 49 3-56 6-60 (125)
52 4XQK_B LlaBIII; ATP-dependent 93.0 0.14 1.7E-06 43.7 2.5 56 1-56 31-95 (1578)
53 4QBL_E VRR-NUC; Nuclease, HYDR 92.7 0.2 2.3E-06 32.8 2.4 29 38-66 69-100 (145)
54 8D3P_I CRISPR-associated exonu 92.3 3.1 3.6E-05 26.6 7.9 54 4-57 42-111 (218)
55 PF13366.10 ; PDDEXK_3 ; PD-(D/ 91.5 3.3 3.8E-05 25.4 7.2 44 8-56 28-77 (118)
56 2FCO_A recombination protein U 91.3 0.28 3.2E-06 34.2 2.0 27 38-65 85-118 (200)
57 4IC1_F Uncharacterized protein 91.3 3.7 4.2E-05 25.4 8.6 54 4-57 62-121 (206)
58 PF15516.10 ; BpuSI_N ; BpuSI N 90.2 1.2 1.4E-05 30.1 4.2 60 8-68 16-79 (152)
59 1M0D_B Endodeoxyribonuclease I 89.9 3.5 4.1E-05 26.9 6.0 45 8-56 9-57 (138)
60 PF14082.10 ; SduA_C ; Shedu pr 89.8 0.68 7.9E-06 30.6 2.7 32 32-64 38-71 (170)
61 PF10926.12 ; DUF2800 ; Protein 89.8 4.6 5.3E-05 28.2 6.8 52 5-57 82-137 (369)
62 5ZYT_C Mitochondrial genome ma 89.1 6.4 7.4E-05 29.4 7.5 51 5-57 183-235 (324)
63 PF09254.15 ; FokI_cleav_dom ; 88.7 2.3 2.7E-05 30.2 4.8 52 4-62 38-90 (193)
64 PF04556.16 ; DpnII ; DpnII res 88.6 3.3 3.8E-05 30.2 5.7 57 3-60 142-217 (281)
65 PF05367.15 ; Phage_endo_I ; Ph 87.4 5.7 6.6E-05 25.8 5.7 45 8-56 12-60 (141)
66 PF08722.15 ; Tn7_TnsA-like_N ; 87.2 1.6 1.9E-05 23.4 2.7 22 35-57 24-45 (76)
67 7LW7_A Exonuclease V; HYDROLAS 87.2 14 0.00016 26.5 7.9 47 10-57 125-173 (346)
68 4F0Q_B Restriction endonucleas 86.6 8.3 9.6E-05 30.2 7.1 52 1-56 294-358 (456)
69 4R5Q_A CRISPR-associated exonu 86.4 11 0.00012 24.4 7.7 52 4-57 90-143 (216)
70 1WTE_A EcoO109IR; Restriction 85.4 1.9 2.2E-05 31.5 3.0 28 38-65 109-136 (272)
71 PF19778.3 ; RE_endonuc ; Endon 84.8 8.7 0.0001 22.0 5.7 49 8-57 15-70 (104)
72 PF13020.10 ; NOV_C ; Protein N 84.7 4.3 4.9E-05 23.5 3.8 49 5-56 3-55 (96)
73 5ZYU_A Mitochondrial genome ma 83.7 18 0.00021 24.7 7.0 51 5-57 113-165 (254)
74 PF08907.15 ; DUF1853 ; Domain 82.9 16 0.00018 27.3 6.8 50 4-54 61-114 (287)
75 PF09903.13 ; DUF2130 ; Unchara 81.5 12 0.00014 27.2 5.7 60 3-64 34-103 (261)
76 PF06372.16 ; Gemin6 ; Gemin6 S 80.4 13 0.00015 22.0 4.8 33 23-56 16-50 (85)
77 PF04555.17 ; XhoI ; Restrictio 80.3 8.1 9.3E-05 27.6 4.4 59 5-64 23-87 (190)
78 6PPU_A ATP-dependent DNA helic 80.1 16 0.00019 28.8 6.4 39 19-57 568-617 (724)
79 8IBX_C Reverse transcriptase-l 78.7 8.8 0.0001 32.2 4.8 45 8-54 966-1010(1114)
80 PF14511.10 ; RE_EcoO109I ; Typ 78.5 4.8 5.5E-05 27.6 2.8 27 38-65 93-119 (196)
81 PF13588.10 ; HSDR_N_2 ; Type I 78.4 16 0.00019 20.8 4.7 49 8-56 7-65 (117)
82 PF12684.11 ; DUF3799 ; PDDEXK- 78.0 23 0.00027 22.4 6.1 35 23-60 96-133 (235)
83 7MID_B CRISPR-associated exonu 77.9 17 0.0002 27.9 5.8 38 19-57 65-104 (559)
84 PF17550.6 ; PsaF ; Family of u 77.5 20 0.00023 25.8 5.6 34 20-53 34-67 (162)
85 PF10356.13 ; RRG7 ; Required f 76.6 14 0.00017 26.2 4.8 59 1-65 3-103 (185)
86 PF02237.21 ; BPL_C ; Biotin pr 75.5 13 0.00015 18.1 3.8 29 23-51 2-31 (48)
87 5C2N_D Beta propeller; bladed 74.3 7.7 8.9E-05 22.1 2.5 16 38-53 4-19 (48)
88 PF19096.4 ; DUF5784 ; Family o 73.8 36 0.00041 27.1 6.5 55 7-68 195-249 (327)
89 PF13535.10 ; ATP-grasp_4 ; ATP 73.7 25 0.00029 20.6 6.1 44 8-63 114-159 (160)
90 PF01930.21 ; Cas_Cas4 ; Domain 73.3 11 0.00013 22.5 3.2 21 35-57 55-75 (162)
91 6EKO_A Restriction endonucleas 72.9 21 0.00025 27.9 5.2 62 1-62 109-195 (312)
92 3H1T_A Type I site-specific re 72.4 12 0.00014 28.1 3.7 50 8-57 31-96 (590)
93 6QW0_A RNA-dependent RNA polym 71.6 9.7 0.00011 27.4 3.0 22 38-59 113-135 (212)
94 PF12784.11 ; PDDEXK_2 ; PD-(D/ 71.3 17 0.00019 24.4 3.9 25 32-56 50-74 (231)
95 4OC8_C restriction endonucleas 69.6 31 0.00036 26.2 5.4 52 1-55 246-305 (388)
96 7BBL_A Gem-associated protein 69.6 34 0.0004 20.5 4.8 35 23-57 16-52 (92)
97 PF01071.23 ; GARS_A ; Phosphor 69.5 24 0.00028 21.5 4.1 25 36-62 174-199 (199)
98 PF06054.15 ; CoiA ; Competence 69.4 62 0.00071 24.7 6.9 49 5-57 72-120 (390)
99 PF21028.1 ; DUF1285_C ; Protei 69.0 19 0.00022 21.9 3.5 41 24-64 15-63 (91)
100 PF02750.18 ; Synapsin_C ; Syna 68.5 30 0.00035 21.6 4.4 29 36-65 157-186 (203)
101 PF20796.1 ; PDDEXK_13 ; PD-(D/ 68.4 8.7 0.0001 27.7 2.3 23 33-55 132-158 (282)
102 PF15518.10 ; L_protein_N ; L p 68.4 9.4 0.00011 24.8 2.2 24 38-62 73-97 (103)
103 PF19246.3 ; DUF5894 ; Family o 67.3 6.8 7.9E-05 23.6 1.3 20 38-57 2-23 (57)
104 PF12705.11 ; PDDEXK_1 ; PD-(D/ 66.6 29 0.00034 21.8 4.1 41 21-65 102-165 (242)
105 PF19782.3 ; DUF6267 ; Family o 65.7 19 0.00022 28.4 3.8 46 4-51 15-65 (392)
106 PF18708.5 ; MapZ_C2 ; MapZ ext 64.8 48 0.00055 21.8 4.8 47 9-57 26-89 (94)
107 1T0F_A Transposon Tn7 transpos 64.7 20 0.00024 25.4 3.4 23 34-56 112-136 (276)
108 2IXS_A SDAI RESTRICTION ENDONU 64.7 12 0.00014 28.8 2.5 26 38-63 232-258 (323)
109 PF14398.10 ; ATPgrasp_YheCD ; 64.4 33 0.00039 21.8 4.1 26 36-63 206-232 (250)
110 PF20212.2 ; DUF6572 ; Family o 64.3 12 0.00014 23.6 2.1 16 37-52 8-24 (107)
111 3RMU_A Methylmalonyl-CoA epime 63.7 39 0.00045 19.0 4.1 44 8-52 88-131 (134)
112 6QH4_C Methylmalonyl-CoA epime 63.0 35 0.0004 21.0 3.9 44 8-52 109-152 (155)
113 1I7N_A SYNAPSIN II; SYNAPSE, P 62.3 39 0.00045 23.2 4.4 29 36-65 259-288 (309)
114 6NTV_B RNA polymerase; SFTSV, 62.3 19 0.00022 26.2 3.0 22 38-59 111-133 (226)
115 8GY8_B Putative translation in 62.0 63 0.00072 25.3 5.8 46 8-54 265-311 (375)
116 PF14090.10 ; HTH_39 ; Helix-tu 61.8 41 0.00047 18.6 4.5 30 9-38 30-60 (68)
117 PF02222.26 ; ATP-grasp ; ATP-g 61.7 49 0.00057 19.5 6.8 51 5-68 121-172 (172)
118 3HQG_A Type-2 restriction enzy 61.3 23 0.00027 25.8 3.3 57 1-61 82-149 (222)
119 PF10877.12 ; DUF2671 ; Protein 60.6 19 0.00021 23.6 2.4 16 41-56 47-62 (88)
120 PF15649.10 ; Tox-REase-7 ; Res 60.5 14 0.00017 22.4 1.9 50 4-63 1-58 (88)
121 PF18742.5 ; DpnII-MboI ; REase 60.1 24 0.00027 23.7 3.0 45 8-55 36-80 (148)
122 PF06666.15 ; DUF1173 ; Protein 59.7 24 0.00027 26.2 3.2 45 8-54 306-350 (377)
123 PF02655.18 ; ATP-grasp_3 ; ATP 59.6 39 0.00045 20.2 3.6 25 36-60 135-167 (167)
124 PF06023.16 ; Csa1 ; CRISPR-ass 58.3 69 0.00079 21.0 4.8 49 5-57 127-190 (281)
125 7LO5_C Site-specific DNA-methy 58.2 89 0.001 26.9 6.5 58 5-63 30-89 (1029)
126 3ZI1_A GLYOXALASE DOMAIN-CONTA 58.2 90 0.001 22.1 5.7 45 8-52 233-277 (330)
127 1EHI_B D-ALANINE:D-LACTATE LIG 57.9 71 0.00082 23.0 5.2 34 8-54 284-317 (377)
128 3S1S_A restriction endonucleas 57.7 45 0.00052 28.1 4.7 60 8-68 30-93 (878)
129 PF14397.10 ; ATPgrasp_ST ; Sug 57.4 35 0.00041 22.0 3.3 18 36-54 233-250 (274)
130 PF08011.15 ; PDDEXK_9 ; PD-(D/ 56.9 27 0.00032 20.0 2.6 18 37-55 31-48 (97)
131 PF05626.15 ; DUF790 ; Protein 56.8 99 0.0011 24.4 6.2 47 8-54 290-338 (402)
132 6P66_B DNA endonuclease Bax1; 56.4 80 0.00092 25.6 5.7 46 8-54 274-319 (468)
133 3OXH_A RV0577 PROTEIN; KINASE 56.4 75 0.00087 21.7 5.0 41 8-52 235-275 (282)
134 6PPR_A ATP-dependent DNA helic 56.1 56 0.00065 26.8 4.9 31 34-64 915-945 (1045)
135 PF08727.15 ; P3A ; Poliovirus 55.2 32 0.00037 20.0 2.6 21 9-30 26-46 (52)
136 7BBL_B Gem-associated protein 55.2 44 0.00051 20.9 3.4 41 12-53 20-61 (87)
137 1D02_B TYPE II RESTRICTION ENZ 55.1 27 0.00032 26.0 2.8 20 36-55 80-100 (202)
138 2A4X_A Mitomycin-Binding Prote 54.8 69 0.0008 19.0 5.2 45 5-53 82-126 (138)
139 6PPU_B UvrD/REP helicase; DNA, 54.8 39 0.00046 27.8 3.8 23 35-57 996-1018(1095)
140 7M4S_A AMdnB protein; Natural 54.7 97 0.0011 22.1 5.4 33 8-54 300-332 (360)
141 6HZ4_N Protein McrC; AAA+ supe 54.5 81 0.00094 23.0 5.1 50 5-55 199-259 (348)
142 5KS8_A Pyruvate carboxylase su 54.5 1.3E+02 0.0014 21.9 6.7 45 5-62 185-230 (405)
143 3Q2O_B Phosphoribosylaminoimid 54.5 1.2E+02 0.0014 21.6 5.8 37 8-57 242-278 (389)
144 5IG9_D ATP grasp ligase; RiPP, 54.3 1E+02 0.0012 21.2 5.3 33 8-54 263-295 (333)
145 6P4W_B Endonuclease Bax1; Heli 53.8 96 0.0011 24.3 5.6 46 8-54 265-312 (374)
146 PF03984.17 ; DUF346 ; Repeat o 53.6 32 0.00037 15.7 2.1 14 37-50 1-14 (35)
147 7R8P_A ATP-grasp domain-contai 53.5 1.4E+02 0.0016 22.1 6.5 44 5-62 276-320 (406)
148 1E4E_B VANCOMYCIN/TEICOPLANIN 53.4 1.1E+02 0.0013 21.0 5.5 34 8-54 273-306 (343)
149 5D8D_D D-alanine--D-alanine li 53.4 1E+02 0.0012 20.6 6.6 42 8-62 236-278 (308)
150 4C5C_A D-ALANINE--D-ALANINE LI 53.0 1.1E+02 0.0013 20.9 5.6 34 8-54 262-295 (330)
151 3TQT_A D-alanine--D-alanine li 52.8 1.1E+02 0.0012 22.1 5.4 34 8-54 284-317 (372)
152 3WVQ_C PGM1; ATP grasp domain, 52.7 1.3E+02 0.0014 22.4 5.9 40 9-61 300-340 (447)
153 PF11407.12 ; RestrictionMunI ; 52.5 28 0.00032 25.8 2.5 20 36-55 77-97 (193)
154 3U4Q_B ATP-dependent helicase/ 52.5 2.1E+02 0.0025 24.3 7.6 53 5-57 894-965 (1166)
155 PF06868.15 ; DUF1257 ; Protein 52.4 82 0.00094 19.2 4.7 43 15-57 2-45 (103)
156 6DGI_B D-alanine--D-alanine li 52.4 1.1E+02 0.0013 21.3 5.3 34 8-54 265-298 (337)
157 PF10117.13 ; McrBC ; McrBC 5-m 52.4 30 0.00035 24.6 2.6 21 34-55 259-279 (318)
158 2Z04_B Phosphoribosylaminoimid 52.0 1.2E+02 0.0014 21.6 5.5 41 8-61 218-259 (365)
159 6CK0_B Biotin acetyl coenzyme 51.2 83 0.00095 22.0 4.6 34 24-57 184-218 (220)
160 5NRH_B D-alanine--D-alanine li 51.1 1.1E+02 0.0013 20.3 5.7 34 8-54 243-276 (312)
161 1YCY_C Conserved hypothetical 50.8 84 0.00098 18.9 4.6 32 23-55 15-47 (71)
162 2I87_B D-alanine-D-alanine lig 50.1 1.4E+02 0.0016 21.1 5.6 34 8-54 274-307 (364)
163 2R85_A PurP protein PF1517; AT 49.8 71 0.00082 21.9 4.0 26 36-62 267-293 (334)
164 6BU2_A Glyoxalase; Epimerase M 49.6 82 0.00095 18.4 5.1 53 8-61 97-151 (151)
165 PF06616.15 ; BsuBI_PstI_RE ; B 48.6 35 0.00041 24.4 2.5 26 38-63 77-109 (170)
166 2R7K_A 5-formaminoimidazole-4- 48.5 1.4E+02 0.0017 20.9 5.9 42 8-62 272-320 (361)
167 PF14243.10 ; R2K_3 ; ATP-grasp 48.1 61 0.0007 21.0 3.4 23 38-61 111-134 (147)
168 PF17962.5 ; bMG6 ; Bacterial m 48.0 36 0.00042 20.5 2.2 18 33-50 14-31 (113)
169 PF09571.14 ; RE_XcyI ; XcyI re 48.0 37 0.00043 26.1 2.7 49 9-57 165-227 (305)
170 PF03133.19 ; TTL ; Tubulin-tyr 47.8 57 0.00066 22.6 3.3 18 36-54 267-284 (321)
171 4E4T_A Phosphoribosylaminoimid 47.8 1.5E+02 0.0017 21.7 5.5 37 8-57 267-303 (419)
172 8EVW_A D-alanine--D-alanine li 47.3 1.4E+02 0.0016 20.4 6.2 43 8-63 268-311 (347)
173 PF03698.17 ; UPF0180 ; Unchara 47.2 24 0.00028 21.3 1.3 19 5-23 6-24 (77)
174 PF13351.10 ; DUF4099 ; Protein 47.2 1E+02 0.0012 18.7 4.8 26 26-51 40-68 (79)
175 2RK0_A Glyoxalase/Bleomycin re 47.1 1.1E+02 0.0013 19.0 5.5 40 5-50 83-122 (136)
176 PF07478.17 ; Dala_Dala_lig_C ; 46.5 1.1E+02 0.0013 18.9 6.9 44 8-63 143-187 (209)
177 6WFI_A Methylmalonyl-CoA epime 46.4 85 0.00098 18.9 3.6 44 8-52 92-135 (146)
178 PF14130.10 ; Cap4_nuclease ; C 45.7 56 0.00064 21.2 2.9 25 39-64 40-65 (194)
179 PF00903.29 ; Glyoxalase ; Glyo 45.2 84 0.00097 17.2 3.5 41 9-52 83-123 (123)
180 PF18299.5 ; R2K_2 ; ATP-grasp 44.7 1.1E+02 0.0013 19.3 4.1 25 36-61 111-136 (147)
181 PF11095.12 ; Gemin7 ; Gem-asso 44.6 84 0.00097 19.2 3.4 41 12-53 11-55 (79)
182 6JIL_B Cycloserine biosynthesi 44.3 70 0.00081 21.9 3.3 18 36-54 253-270 (307)
183 PF19581.3 ; Glyoxalase_7 ; Gly 44.3 91 0.0011 17.4 4.4 41 8-52 85-125 (131)
184 6UKF_X HhaI Restriction Endonu 44.1 99 0.0011 23.8 4.3 50 2-59 1-52 (258)
185 3SE7_F VanA; alpha-beta struct 43.9 1.6E+02 0.0019 20.2 5.2 34 8-54 273-306 (346)
186 2GB7_C R.Ecl18kI; ECL18KI-DNA 43.8 95 0.0011 23.9 4.3 61 1-61 118-189 (305)
187 PF19386.3 ; DUF5961 ; Family o 43.7 75 0.00087 20.1 3.1 37 4-40 20-63 (72)
188 5VEV_A Phosphoribosylamine--gl 43.4 92 0.0011 22.5 3.9 25 36-61 276-301 (431)
189 3K3P_A D-alanine--D-alanine li 43.3 1.8E+02 0.0021 21.1 5.4 34 8-54 304-337 (383)
190 3L0A_A Putative exonuclease; R 42.9 1.6E+02 0.0019 19.8 5.0 31 23-57 115-147 (266)
191 2C21_A TRYPANOTHIONE-DEPENDENT 42.5 1.1E+02 0.0013 17.8 4.7 37 8-52 88-124 (144)
192 6LL9_A D-alanine--D-alanine li 42.3 1.9E+02 0.0022 20.7 5.4 34 8-54 306-339 (374)
193 2QGU_A Probable signal peptide 42.2 1.1E+02 0.0013 20.6 4.0 41 26-66 138-178 (211)
194 3VPB_B Putative acetylornithin 41.9 85 0.00098 20.7 3.3 18 36-54 234-251 (282)
195 5EAN_A DNA replication ATP-dep 41.5 52 0.0006 28.2 2.8 35 23-57 265-306 (1059)
196 PF04174.17 ; CP_ATPgrasp_1 ; A 41.3 72 0.00084 22.9 3.2 25 36-61 71-96 (332)
197 5H80_A Carboxylase; Multienzym 40.9 2.3E+02 0.0027 21.1 6.4 41 8-61 284-325 (494)
198 3ORQ_B N5-Carboxyaminoimidazol 40.7 2E+02 0.0023 20.3 6.3 42 8-62 238-280 (377)
199 2PJS_A Uncharacterized protein 40.6 1.1E+02 0.0012 17.2 4.9 41 8-52 75-115 (119)
200 3WNZ_A Alanine-anticapsin liga 40.5 2.3E+02 0.0027 21.0 6.4 41 8-60 293-334 (470)
201 3CW1_I Small nuclear ribonucle 40.4 1.8E+02 0.0021 20.0 4.8 33 23-55 13-46 (174)
202 PF01002.23 ; Flavi_NS2B ; Flav 40.3 67 0.00078 22.0 2.7 23 30-53 63-85 (127)
203 1DC1_A BSOBI RESTRICTION ENDON 40.0 1.2E+02 0.0013 23.8 4.2 33 25-57 185-244 (323)
204 4G6X_A Glyoxalase/bleomycin re 40.0 1.4E+02 0.0016 18.2 4.8 40 8-52 109-148 (155)
205 2P0A_A Synapsin-3; synapsin, n 39.9 91 0.0011 21.8 3.4 18 36-54 276-293 (344)
206 3SM4_C Exonuclease; homologous 39.7 1.8E+02 0.0021 19.4 5.4 53 4-60 84-140 (229)
207 2Q7D_A Inositol-tetrakisphosph 39.6 1.1E+02 0.0013 21.7 3.8 19 36-54 289-307 (346)
208 7YBU_B Propionyl-CoA carboxyla 38.6 2.9E+02 0.0033 22.5 6.3 41 8-61 317-358 (728)
209 3GLK_A Acetyl-CoA carboxylase 38.5 2.9E+02 0.0033 21.4 6.8 44 5-61 325-369 (540)
210 7L1K_C N-alpha-acetyltransfera 38.4 1.6E+02 0.0018 18.4 4.6 33 23-55 56-89 (116)
211 PF14811.10 ; TPD ; Protein of 38.2 11 0.00013 25.4 -1.1 59 1-60 28-91 (138)
212 2PN1_A Carbamoylphosphate synt 38.1 2.1E+02 0.0025 19.9 6.0 40 8-61 236-276 (331)
213 3LWB_A D-alanine--D-alanine li 38.0 2.2E+02 0.0026 20.1 5.1 33 8-54 299-331 (373)
214 1Z2N_X inositol 1,3,4-trisphos 38.0 1.1E+02 0.0013 21.6 3.7 18 36-54 277-295 (324)
215 2PP6_A Gifsy-2 prophage ATP-bi 37.8 1.6E+02 0.0019 18.4 4.1 24 28-52 69-92 (102)
216 7VSR_N Protein McrC; AAA+ prot 37.3 66 0.00077 23.3 2.5 23 32-55 199-221 (310)
217 7MGV_A CdnC; Ribosomally synth 37.1 1E+02 0.0012 21.5 3.3 18 36-54 298-315 (360)
218 3OUZ_B Biotin carboxylase; Str 37.0 2.5E+02 0.0029 20.3 6.7 44 5-61 257-301 (446)
219 5IG8_B ATP grasp ligase; RiPP, 37.0 2.3E+02 0.0027 20.0 5.4 33 8-54 266-298 (335)
220 4FCZ_A Toluene-tolerance prote 36.5 1.3E+02 0.0015 21.0 3.8 41 26-66 133-174 (223)
221 PF03975.17 ; CheD ; CheD chemo 36.4 1.3E+02 0.0015 18.7 3.5 24 4-27 59-82 (103)
222 3VOT_A L-amino acid ligase, BL 36.4 2.6E+02 0.003 20.3 5.7 41 8-60 253-294 (425)
223 7VMV_C Core protein; NS3 Prote 36.2 81 0.00094 20.4 2.5 36 30-66 46-82 (82)
224 PF09810.13 ; Exo5 ; Exonucleas 36.1 1.4E+02 0.0017 23.3 4.2 30 34-63 108-185 (360)
225 7KCT_A 2-oxoglutarate carboxyl 35.3 2.9E+02 0.0034 20.6 5.8 41 8-61 264-305 (481)
226 PF18257.5 ; DsbG_N ; Disulfide 35.1 1.5E+02 0.0017 18.9 3.6 24 27-51 30-53 (89)
227 2EJ9_A Putative biotin ligase; 35.1 2.2E+02 0.0026 19.6 4.7 43 7-51 176-219 (237)
228 3E5N_A D-alanine-D-alanine lig 35.1 2.7E+02 0.0031 20.1 6.1 43 8-63 302-345 (386)
229 1BIA_A BirA BIFUNCTIONAL PROTE 34.8 2.2E+02 0.0026 20.9 4.8 44 7-51 257-300 (321)
230 PF14403.10 ; CP_ATPgrasp_2 ; C 34.6 1.2E+02 0.0014 22.1 3.4 25 36-61 71-96 (377)
231 6HMV_B Genome polyprotein; com 34.4 1.4E+02 0.0016 17.5 3.1 21 9-30 22-45 (50)
232 5K2M_B RimK-related lysine bio 34.0 1.2E+02 0.0014 20.0 3.2 17 36-54 226-242 (273)
233 7U56_B D-alanine--D-alanine li 34.0 2.7E+02 0.0031 19.8 6.3 43 8-63 302-345 (384)
234 PF08608.16 ; Wyosine_form ; Wy 33.9 41 0.00048 19.2 0.9 10 47-56 2-11 (62)
235 6Y3P_A KLLA0B12012p; ATP-grasp 33.9 1.4E+02 0.0017 22.1 3.8 21 36-57 329-349 (402)
236 7UK6_A Putative acid--amine li 33.8 1E+02 0.0012 22.9 3.0 25 36-61 107-132 (394)
237 6CKY_B Glyoxalase; resistance, 33.7 1.8E+02 0.0021 17.7 4.7 40 8-52 111-150 (155)
238 6HLW_D Genome polyprotein; com 33.7 55 0.00063 18.8 1.3 21 9-30 22-43 (48)
239 PF02786.21 ; CPSase_L_D2 ; Car 33.6 1.8E+02 0.0021 17.7 6.7 45 5-61 135-180 (207)
240 1PK8_E rat synapsin I; ATP bin 33.6 1.1E+02 0.0013 23.4 3.3 18 36-54 371-388 (422)
241 7WTE_C Pyruvate carboxylase, m 33.2 2.6E+02 0.0031 24.9 5.7 42 8-62 292-334 (1178)
242 6UT7_N McrBC 5-methylcytosine 33.1 87 0.001 24.3 2.7 20 36-55 337-356 (458)
243 6G3B_B Type II site-specific d 33.1 3.3E+02 0.0039 20.9 5.6 48 4-59 119-168 (238)
244 3U9T_A Methylcrotonyl-CoA carb 33.1 3.6E+02 0.0042 21.6 6.0 41 8-61 262-303 (655)
245 6MRR_A Foldit1; De novo protei 32.9 1.1E+02 0.0013 18.8 2.6 18 5-22 46-63 (68)
246 1SS4_B Glyoxalase family prote 32.9 1.7E+02 0.002 17.2 5.5 41 8-52 106-146 (153)
247 8EVY_B D-alanine--D-alanine li 32.8 2.4E+02 0.0028 19.0 6.6 42 8-62 248-290 (320)
248 3MJF_A Phosphoribosylamine--gl 32.5 1.4E+02 0.0017 21.4 3.5 21 36-57 273-293 (431)
249 7VQ6_B Lactoylglutathione lyas 32.5 2E+02 0.0023 17.7 4.2 36 8-52 144-179 (192)
250 1MPY_B CATECHOL 2,3-DIOXYGENAS 32.1 2.6E+02 0.0029 19.3 4.6 42 8-52 225-266 (307)
No 1
>3FOV_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION; 1.88A {Rhodopseudomonas palustris}
Probab=98.64 E-value=2.1e-07 Score=58.75 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=42.3 Template_Neff=9.400
Q ss_pred cchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 2 YSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 2 ~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
..|..+|..+..+|++.||.++.++.... ..++|||+.+ ++.++|||||+.
T Consensus 21 ~~g~~~E~~a~~~l~~~G~~v~~~~~~~~----~~eiDiia~~-~~~l~~VeVK~~ 71 (134)
T 3FOV_A 21 RTGLSAEASAADYLERQGYRILARRFKTR----CGEIDLVAQR-DALVAFVEVKAR 71 (134)
T ss_dssp ----CHHHHHHHHHHHTTCEEEEEEEEET----TEEEEEEEEE-TTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEecccCC----CccceEEEEE-CCEEEEEEEEEe
Confidence 46889999999999999999998887633 3589999999 889999999998
No 2
>PF02021.21 ; UPF0102 ; Uncharacterised protein family UPF0102
Probab=98.61 E-value=2.6e-07 Score=54.10 Aligned_cols=46 Identities=30% Similarity=0.402 Sum_probs=42.7 Template_Neff=10.000
Q ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 7 GVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 7 Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+|..+..+|.++||.++..++... .+++|||+.+ ++.++|||||++
T Consensus 1 ~E~~~~~~l~~~G~~i~~~~~~~~----~~eiDli~~~-~~~~~~vevk~~ 46 (91)
T Y2807_DESPS/12 1 GEYLACRFLKKQGYVILQKNYRKK----YGEIDIIAQE-GGDLVFVEVKTR 46 (91)
T ss_pred CHHHHHHHHHHCCCEEEEecCCCC----CCeeEEEEEE-CCEEEEEEEEEe
Confidence 578999999999999998998887 7899999999 999999999988
No 3
>2WCW_C HJC; TYPE II RESTRICTION ENDONUCLEASE, HYDROLASE, DNA BINDING PROTEIN, HOLLIDAY JUNCTION RESOLVASE; HET: ACT; 1.58A {ARCHAEOGLOBUS FULGIDUS} SCOP: c.52.1.0
Probab=98.18 E-value=5.1e-06 Score=51.77 Aligned_cols=55 Identities=25% Similarity=0.167 Sum_probs=42.0 Template_Neff=10.200
Q ss_pred cchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CC
Q FD01543185_039 2 YSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KG 59 (68)
Q Consensus 2 ~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a 59 (68)
.+|..+|..+..+|.++||.+...+..... ....+|+++.+ ++..++||||++ ..
T Consensus 6 ~~g~~~E~~~~~~L~~~G~~~~~~~~~~~~--~~~~~Dii~~~-~~~~~~iEvK~~~~~ 61 (139)
T 2WCW_C 6 SKGTRFERDLLVELWKAGFAAIRVAGAGVS--PFPCPDIVAGN-GRTYLAIEVKMRKEL 61 (139)
T ss_dssp --CHHHHHHHHHHHHHTTCEEEEBCCCSCC--SSCCCSEEEEC-SSCEEEEEEEECSSS
T ss_pred chhHHHHHHHHHHHHHcCCcEEEeCCCCCC--CCCCCCEEEEc-CCcEEEEEEEecCCC
Confidence 468999999999999999998644332210 01368999999 999999999998 53
No 4
>PF18743.5 ; AHJR-like ; REase_AHJR-like
Probab=98.17 E-value=2.9e-06 Score=53.03 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred chhHHHHHHHHHHHHCCCeEEEEEEEEee--CCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKNGFTVVAEEVTMKV--NGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G~~iv~~eVti~~--~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.+...+..+..+|++.||.+......... .+...++|+|+.+ +|.++|||||++
T Consensus 8 ~e~~~~~~v~~~l~~~G~~v~~~~~~~~~~~~~~~~~~Dlia~~-~~~~~~iEvK~~ 63 (125)
T A0A1J1LKF2_9CY 8 QEREQLLKLAENYCQKGYEIFLHPNLEELPDFLKSYRPDLIVRR-GEEAVVIEVKSR 63 (125)
T ss_pred HHHHHHHHHHHHHHHCCcEEEecCCHHhCChhHhcCCCCEEEEe-CCeEEEEEEEcc
No 5
>1GEF_D HOLLIDAY JUNCTION RESOLVASE; Holliday junction resolvase, HJC, HYDROLASE; HET: SO4; 2.0A {Pyrococcus furiosus} SCOP: c.52.1.18
Probab=98.14 E-value=9.5e-06 Score=50.01 Aligned_cols=57 Identities=28% Similarity=0.297 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-C--CCCCcCc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-K--GRLTKGQ 65 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~--a~lT~NQ 65 (68)
+.+|..+|..+...|.+.||.+....-. .+ +||++.+ ++.+++||||+. . ..++.+|
T Consensus 2 ~~~G~~~E~~v~~~l~~~G~~v~~~~~~---~~----~Dli~~~-~~~~~~iEvK~~~~~~~~~~~~~ 61 (123)
T 1GEF_D 2 YRKGAQAERELIKLLEKHGFAVVRSAGS---KK----VDLVAGN-GKKYLCIEVKVTKKDHLYVGKRD 61 (123)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEBGGG---SS----CSEEEEC-SSCEEEEEEEECSSSCEECCHHH
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEcCCC---CC----CCEEEEe-CCeEEEEEEEEecCCceecCHHH
No 6
>4TKD_C Holliday junction resolvase Hjc; HYDROLASE; 2.01A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=98.03 E-value=1.2e-05 Score=51.07 Aligned_cols=61 Identities=26% Similarity=0.377 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCE--EEEEEEEEECCCCCEEEEEEEcC-CCC--CCcCc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGK--RIRADIVAKDANGNYHVFEVKNG-KGR--LTKGQ 65 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~--r~r~Diva~d~~G~i~~~EvK~g-~a~--lT~NQ 65 (68)
..+|..+|..+...|.+.||.+...... .+. ...+||++.+ ++.+++||||+. ... ++++|
T Consensus 5 ~~~G~~~E~~v~~~l~~~G~~v~~~~~~---~~~~~~~~~Dii~~~-~~~~~~iEvK~~~~~~~~~~~~~ 70 (141)
T 4TKD_C 5 KRKGSAVERNIVSRLRDKGFAVVRAPAS---GSKRKDPIPDIIALK-NGVIILIEMKSRKDGKIYVRREQ 70 (141)
T ss_dssp ----CHHHHHHHHHHHHTTCEEEECCSS---CCCSSSCCCSEEEEE-TTEEEEEEEEECBTTBEEECHHH
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEcCCC---CCCCCCCCCCEEEEE-CCEEEEEEEEeeCCCceeecHHH
No 7
>1OB8_B HOLLIDAY-JUNCTION RESOLVASE; HYDROLASE, ENZYME, HOMOLOGOUS RECOMBINATION, HOLLIDAY JUNCTION RESOLVING ENZYME, NUCLEASE, ARCHAEA, THERMOPHILE; HET: SO4, EDO; 1.8A {SULFOLOBUS SOLFATARICUS} SCOP: c.52.1.18
Probab=97.93 E-value=2.6e-05 Score=49.57 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEE-EEEEEEECCCCCEEEEEEEcC-CC--CCCcCc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRI-RADIVAKDANGNYHVFEVKNG-KG--RLTKGQ 65 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~-r~Diva~d~~G~i~~~EvK~g-~a--~lT~NQ 65 (68)
+.+|..+|..+...|++.|+.+....-. .+... .+||++.. +|..+++|||+. .. .+++.|
T Consensus 3 ~~kG~~~E~~~~~~l~~~G~~~~r~~~s---~~~~~~~~Dli~~~-~~~~~~iEvK~~~~~~~~~~~~q 67 (135)
T 1OB8_B 3 RDIGKNAERELVSILRGEGFNAVRIPTS---NSSPNPLPDIFATK-GNTLLSIECKSTWENKVKVKEHQ 67 (135)
T ss_dssp -CTTHHHHHHHHHHHHHTTCEEEECCC--------CCSCSEEEEE-TTEEEEEEEEEESSSEEEECHHH
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEeCCC---CCCCCCCCcEEEEe-CCeEEEEEEEecCCCceecCHHH
No 8
>6XL1_A Card1; Cad1, Dnase, cyclic oligoadenylates, DNA BINDING PROTEIN, DNA BINDING PROTEIN-RNA complex; HET: EPE; 1.95A {Treponema succinifaciens DSM 2489}
Probab=97.85 E-value=0.0001 Score=53.69 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred chhHHHHHHHHHHHHC----CCeEEEEEEEEeeCCEEEEEEEEEECCC-CCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKN----GFTVVAEEVTMKVNGKRIRADIVAKDAN-GNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~----G~~iv~~eVti~~~G~r~r~Diva~d~~-G~i~~~EvK~g 57 (68)
.|.+.|..+...|.+. |..-+...|.+.-+|...++|+++.. + +++++||||++
T Consensus 254 ~G~WlE~~v~~~l~~~~~~~~~~dv~~~v~i~~~~~~nEiDv~~~~-~~~~l~~iECKt~ 312 (382)
T 6XL1_A 254 TGGWFEEYVYQKICNEYHNVDEKNVALNVTIQKGNDKNELNVIYLD-KDNKLHVIECKSF 312 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTEEEEEEEEEEEEEETTEEEEEEEEEEE-TTSCEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHhcCCCccceEEeeEEecCCCCCEEEEEEEe-cCCeEEEEEeecC
No 9
>PF01870.22 ; Hjc ; Archaeal holliday junction resolvase (hjc)
Probab=97.70 E-value=0.00018 Score=40.85 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CC--CCCcCc
Q FD01543185_039 6 RGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KG--RLTKGQ 65 (68)
Q Consensus 6 ~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a--~lT~NQ 65 (68)
.+|..+...|.+.||.+. +... +|.. ||++.. ++..+++|+|+. .. +++..|
T Consensus 1 ~~E~~~~~~l~~~G~~~~-~~~~---~~~~---Dli~~~-~~~~~~vevK~~~~~~~~~~~~~ 55 (87)
T HJC_METJA/10-9 1 SFERELKRLLEKEGFAVI-RSAG---SKGV---DLIAGR-KGEVLIFECKTSSKTKFYINKED 55 (87)
T ss_pred CHHHHHHHHHHHCCCEEE-EcCC---CCCC---cEEEEE-CCEEEEEEEEecCCCceecCHHH
No 10
>3DNX_A uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=97.45 E-value=0.0013 Score=43.15 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.....++|.++|| .+..|+. .+...++|+++.++++.++.+|+|.+
T Consensus 17 ~~~l~~~l~~~g~-~~~~ev~---~~~~~~~Dvv~~~~~~~i~~vEvK~s 62 (153)
T 3DNX_A 17 ARGVARHLRAHGF-VSVEEFV---PARGLRVDVMGLGPKGEIWVIECKSS 62 (153)
T ss_dssp HHHHHHHHHHTTC-EEEEEEC---SSTTCCEEEEEECTTCCEEEEEECSS
T ss_pred HHHHHHHHHHCCC-EEEEEcc---CCCCCeeeEEEEcCCCcEEEEEEeeC
No 11
>PF06319.16 ; MmcB-like ; DNA repair protein MmcB-like
Probab=97.43 E-value=0.0011 Score=43.36 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.+.+.++|...|+ ++..|+++... .++|+++..+.|.++.||+|.+
T Consensus 18 ~~~~~~~l~~~~~-~~~~ev~~~~~---~~~D~v~~~~~~~i~~vEiK~s 63 (148)
T A6WV78_BRUA4/8 18 RRGVQRLFLEMGL-ATLPELPLASG---RRADLMAVNRKGEIWIVEIKSS 63 (148)
T ss_pred HHHHHHHHHhcCe-EEEEecCCCCC---ceeEEEEEeCCCcEEEEEEEec
No 12
>1XMX_A hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, Structural Genomics, PSI, Midwest Center for Structural Genomics, UNKNOWN FUNCTION; HET: GOL, FMT; 2.1A {Vibrio cholerae} SCOP: c.52.1.26, l.1.1.1
Probab=97.43 E-value=0.0013 Score=47.65 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred chhHHHHHHHHHHHHCC-----CeEEEEEEEEee-CC---EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKNG-----FTVVAEEVTMKV-NG---KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G-----~~iv~~eVti~~-~G---~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.|.+.|..+...|.+.+ +.-+...|.+.. ++ ...++|+++.. ++++++||||++
T Consensus 250 ~G~WlE~~v~~~l~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~ElDvl~~~-~~~l~~ieCKt~ 312 (385)
T 1XMX_A 250 NGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVV-NNKLHIIECKTK 312 (385)
T ss_dssp CCCHHHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEE-TTEEEEEEEESS
T ss_pred CChhHHHHHHHHHHHHHhcCCccceeeeeEEEEecCCCccccceEEEEEEE-CCEEEEEEeecC
No 13
>PF09002.15 ; DUF1887 ; Domain of unknown function (DUF1887)
Probab=97.42 E-value=0.0011 Score=48.03 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred chhHHHHHHHHHHHHCC-----CeEEEEEEEEeeC----CEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKNG-----FTVVAEEVTMKVN----GKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G-----~~iv~~eVti~~~----G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.|.++|..+...|.+.+ +.-+...|.+..+ ....++|+++.. ++.+++||||++
T Consensus 248 ~G~wfE~~v~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~E~Dv~~~~-~~~l~~iecK~~ 310 (380)
T Q5E4N1_ALIF1/1 248 NGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGEKDVRNELDVVSIV-NNKLHIIECKTK 310 (380)
T ss_pred CChHHHHHHHHHHHHHHHhCCcceeEEEeeEEEecCCCCcCCceEEEEEEE-CCEEEEEEeecC
No 14
>PF11645.12 ; PDDEXK_5 ; PD-(D/E)XK endonuclease
Probab=97.37 E-value=0.0018 Score=40.26 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
+..|..+|..+...|.+.|+.+... +. ++ .++||++.+ +|.++.+|||+
T Consensus 4 ~~~g~~~e~~v~~~l~~~G~~v~~~-~~---~~--~~~D~~~~~-~~~~~~vqVK~ 52 (132)
T L0IAW2_HALRX/1 4 KQVGDITEVRILAQLVAAGYSVSIP-YG---DN--DPYDLLVDT-GSSVLKVQCKT 52 (132)
T ss_pred hhhHHHHHHHHHHHHHHCCCEEEEe-eC---CC--CCeEEEEEc-CCeEEEEEEEE
No 15
>8BAO_B DUF1887 family protein; nuclease, homodimer, can2, CRISPR ancillary nuclease, cyclic tetra-adenylate, DNA BINDING PROTEIN; HET: GOL; 2.06A {Dysgonamonadaceae bacterium}
Probab=97.34 E-value=0.0017 Score=47.77 Aligned_cols=54 Identities=9% Similarity=-0.083 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred chhHHHHHHHHHHHHC-CCeEEEEEEEEee--CCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKN-GFTVVAEEVTMKV--NGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~-G~~iv~~eVti~~--~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.|.+.|..+...|.+. +..-+.-.|.+.. ++...++|+++.. ++++++||||++
T Consensus 255 ~G~WlE~~v~~~l~~~~~~~dv~~~v~i~~~~~~~~nEiDVl~~~-~~~l~~iECKt~ 311 (387)
T 8BAO_B 255 NYTWLELEIARVLSGWKFAKEVRLNGIFRDKHENAKNEIDCIVNL-GNKILFVECKSH 311 (387)
T ss_dssp TTHHHHHHHHHHHHTCTTCSEEEEEEEEECTTSCEEEEEEEEEEC-SSSEEEEEEESS
T ss_pred cCHHHHHHHHHHHccCCCcceEEEeeEecCCCCCCcceEEEEEEe-CCEEEEEEecCC
No 16
>7BGS_A Holliday junction resolvase; archeal holliday junction resolvase helicase DNA binding enzyme phage 15-6 thermus thermophilus, RECOMBINATION; HET: SO4, MSE; 2.5A {Thermus thermophilus phage 15-6}
Probab=97.33 E-value=0.00091 Score=45.69 Aligned_cols=56 Identities=25% Similarity=0.170 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEE---EEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIR---ADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r---~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
+.+|..+|....+.|.+.|+ ...|... +|.... .||++.+ ++...+||||+. ...+
T Consensus 3 k~KG~~~EReva~~L~~~G~-~a~R~~~---SG~~~~~~~~DIi~~~-~~~~~~iE~K~~~~~~~ 62 (163)
T 7BGS_A 3 KDKGRRYENELVELLKQRGF-TAWRVPL---SGALGGMFSSDVRVML-AGQEHRVEVKMRSTPQA 62 (163)
T ss_dssp --CCHHHHHHHHHHHHHTTC-EEEECC-------------CCEEEEE-TTEEEEEEEEECSSTTT
T ss_pred hHHHHHHHHHHHHHHHHCCC-CEEEccC---CCCCCCCCCCCEEEEe-CCCeEEEEEEecCCCch
No 17
>7BDV_D Can2; CRISPR, cyclic tetra-adenylate, CARF domains, nuclease, DNA BINDING PROTEIN; HET: MSE; 2.02A {Sulfobacillus thermosulfidooxidans}
Probab=97.26 E-value=0.0013 Score=47.60 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred chhHHHHHHHHHHHHCCC----eEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKNGF----TVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G~----~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.|.++|..+...|++.+. .-+...+.+.-++...++|+++.. ++.+++||||++
T Consensus 238 ~G~w~E~~v~~~l~~~~~~~~~~~v~~~~~i~~~~~~~EiDv~~~~-~~~l~~iecK~~ 295 (366)
T 7BDV_D 238 NGGWFEHYVYSLLRQISAQYPIKNLTKNIEISNDSVSNELDVVFLY-HNKLHVIECKTR 295 (366)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCEEEEEEEEEECSSCEEEEEEEEEE-TTEEEEEECC--
T ss_pred cCccHHHHHHHHHHHHhhcCCCceEEccEEEecCCCCCeeeEEEEE-CCEEEEEEeecc
No 18
>PF20472.2 ; PDDEXK_11 ; PD-(D/E)XK nuclease superfamily domain
Probab=97.19 E-value=0.0025 Score=42.85 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred chhHHHHHHHHHHHHCCCeE-----------------EEEEEEEee-CCEEEEEEEEEECC-CCCEEEEEEE
Q FD01543185_039 3 SGRRGVIKAKADLKKNGFTV-----------------VAEEVTMKV-NGKRIRADIVAKDA-NGNYHVFEVK 55 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G~~i-----------------v~~eVti~~-~G~r~r~Diva~d~-~G~i~~~EvK 55 (68)
+|...|......|+..||.+ ..++|.++. .|.+.++|++..++ .+..++||+|
T Consensus 5 sG~~~E~~v~~~L~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~Df~i~~~~~~~~~iIE~K 76 (155)
T A0A418LY79_9BA 5 SGSTLERTVIHTLEDKGFVGVPYGTYRKAPEQYGTEILLRNVPYTTIYGHQGKTEFLLQSEEYGLQIRIECK 76 (155)
T ss_pred hHHHHHHHHHHHHHhCCcEEecCccccCCchhhCCceeeccccccccCCCCCceeEEEEeCCcCCeEEEEEE
No 19
>2OST_A Putative endonuclease; protein-DNA complex, restriction enzyme fold, PD-(D/E)-XK motif, homing endonuclease, group I intron, hydrolase-DNA COMPLEX; 3.1A {Synechocystis sp.}
Probab=97.13 E-value=0.0029 Score=40.32 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+..|..||..+...|...|+.+.. ..+....+||++.+ +|..+-|+||+.
T Consensus 5 ~~~g~~~E~~v~~~L~~~G~~v~~------~~~~~~~~Dliv~~-~~~~~~VqVK~~ 54 (151)
T 2OST_A 5 KLKGDIAQQAAIMRALKMGWGVLK------PLGDRLSYDLVFDV-EGILLKVQVKSS 54 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEE------ESSTTSSCSEEEEE-TTEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEE------ecCCCCCeeEEEEe-CCEEEEEEEEec
No 20
>PF06250.15 ; YhcG_C ; YhcG PDDEXK nuclease domain
Probab=97.06 E-value=0.0019 Score=41.08 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCCeEEEEEEEEeeCCEEEEEEEEEECCC-CCEEEEEEEcC-CCCCCcCc
Q FD01543185_039 18 NGFTVVAEEVTMKVNGKRIRADIVAKDAN-GNYHVFEVKNG-KGRLTKGQ 65 (68)
Q Consensus 18 ~G~~iv~~eVti~~~G~r~r~Diva~d~~-G~i~~~EvK~g-~a~lT~NQ 65 (68)
.|+..+++++.+..++...++|+++.+.+ +.++++|+|.+ ..+=+-.|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~iDll~~~~~~~~~viiElK~~~~~~~~~~Q 90 (157)
T Q30T63_SULDN/1 41 RGFAFVGKQYHLEIAGFDRYIDLLFYHIDLKCYVVIELKNKKFIPEYAGK 90 (157)
T ss_pred CcceeccceEEEEecCccceeeeeeeecccccceeeeeecCCCChhhhhH
No 21
>PF02646.20 ; RmuC ; RmuC family
Probab=96.95 E-value=0.0075 Score=44.15 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CcchhHHHHHHHHHHHHCCCe-E--EEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFT-V--VAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~-i--v~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
+.+|.+||.....-|+..|.. - ..+++++.- +|.+.|+||+.+-|+|...+|.+|.
T Consensus 65 ~~rG~~GE~~Le~iL~~~g~~~~~~~~~Q~~~~~~~g~~~rpD~~I~lp~~~~l~IDSKf 124 (299)
T V5WH46_9SPIO/1 65 KTMGSWGELVLKRVLESSGLREGQEFFLQKEFSGADGNRLRPDAVIQLPGERMVIIDAKA 124 (299)
T ss_pred chhhHHHHHHHHHHHHHCCCcCCceeEEEeeeeCCCCCceecCEEEEcCCCCEEEEEcCC
No 22
>PF08378.15 ; NERD ; Nuclease-related domain
Probab=96.88 E-value=0.021 Score=34.39 Aligned_cols=52 Identities=27% Similarity=0.426 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred chhHHHHHHHHHHHHC---CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 3 SGRRGVIKAKADLKKN---GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~---G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
+|..+|....+.|.+. ++ .+-.++.+...+.+..+|+|...|+| +++||+|.
T Consensus 1 ~~~~~e~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~iD~lii~~~g-i~iie~k~ 55 (121)
T Q3ACF7_CARHZ/1 1 FGQQGEEKVAEVLKEHLPDGY-KIINSYRLNYQGDSWDIDHIVIGPNG-IFVIETKN 55 (121)
T ss_pred CchHHHHHHHHHHHHhCCCCc-EEEecEEeeeCCceEEcCEEEEcCCe-EEEEEEeC
No 23
>4QBN_A Nuclease; Nuclease, HYDROLASE; HET: SO4; 1.85A {Salmonella phage SETP3} SCOP: c.52.1.35
Probab=96.85 E-value=0.0073 Score=35.34 Aligned_cols=58 Identities=21% Similarity=0.147 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcCCC-CCCcCcc
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNGKG-RLTKGQK 66 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g~a-~lT~NQ~ 66 (68)
..-+....++|+..|+ ..-+... .|..--+|+++..+.+...++|+|+... .++++|.
T Consensus 5 ~~~~~~i~~~l~~~g~-~~~~~~~---~~~~G~pDl~~~~~~~~~~~iE~K~~~~~~~~~~Q~ 63 (93)
T 4QBN_A 5 GRVQKYAKERFEALGG-LVRKLSY---EGRSGAPDLLVILPRGVIWFVEVKKDENTKPDPHQL 63 (93)
T ss_dssp HHHHHHHHHHHHHTTC-EEEECCB---TTBCCCCSEEEEEGGGEEEEEEECSSTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCC-EEEEecc---CCCCCCCcEEEEEcCceEEEEEEecCCCCCCCHHHH
No 24
>8Q42_A DUF1887 family protein; Can2, cyclic oligoadenylates, cA4, CARF, CRISPR ancillary nuclease, Protein-DNA complex, DNA BINDING PROTEIN; 1.97A {Thermoanaerobacter brockii subsp. finnii Ako-1}
Probab=96.82 E-value=0.006 Score=45.98 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred chhHHHHHHHHHHHHC----CCeEEEEEEEEee-CC----EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKN----GFTVVAEEVTMKV-NG----KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~----G~~iv~~eVti~~-~G----~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.|.+.|..+...|.+. |+.- .-.|.|.. ++ ...++|+++.. +++++|||||++
T Consensus 301 ~G~WLE~~v~~~~~~~~~~~~~~d-~~~v~i~~~~~~~~~~~nEiDvl~~~-~~~l~~ieCKt~ 362 (439)
T 8Q42_A 301 NGKWFEWYVYSQIKSELLDRKLKE-GEHFGISLKAQKKDSPYFALDIFLIN-GYQLIGISLTTS 362 (439)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCB-TTTEEEEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCC
T ss_pred cCchHHHHHHHHHHHHHHhcCCCc-ccCceeEecCcCCCCCccEEEEEEEe-CCEEEEEEEEcC
No 25
>PF10107.13 ; Endonuc_Holl ; Endonuclease related to archaeal Holliday junction resolvase
Probab=96.75 E-value=0.0016 Score=45.29 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred EEEEEECCC------CCEEEEEEEcC-CCCCCcCccC
Q FD01543185_039 38 ADIVAKDAN------GNYHVFEVKNG-KGRLTKGQKG 67 (68)
Q Consensus 38 ~Diva~d~~------G~i~~~EvK~g-~a~lT~NQ~~ 67 (68)
+|+|+.| . -.|+|+|+|+| ++.||+.|++
T Consensus 107 ID~IvFd-Gls~~~~~~IvFiEvKtg~s~~L~~~qr~ 142 (159)
T Q9WZB4_THEMA/1 107 VDFVVFD-GLSEGNLRRIVFVEVKTGKTGNLNTRERQ 142 (159)
T ss_pred ccEEEec-CCCCCCceEEEEEEeeCCCCcCCCHHHHH
No 26
>2VLD_B Endonuclease NucS; ENDONUCLEASE, HYDROLASE; HET: MSE; 2.6A {Pyrococcus abyssi}
Probab=96.69 E-value=0.016 Score=41.73 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHC------CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKN------GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~------G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
|....+.|..+ |+.++++|..+... ++||++.|.+|++++||+|.+
T Consensus 127 E~~L~~~l~~~p~~i~~gl~~v~~e~~~~~g----~iDll~~d~~g~~vvIElK~~ 178 (251)
T 2VLD_B 127 EAEMANLIFENPRVIEEGFKPIYREKPIRHG----IVDVMGVDKDGNIVVLELKRR 178 (251)
T ss_dssp HHHHHHHHHHCGGGTCTTCEEEEEEEEETTE----EEEEEEECTTSCEEEEEECSS
T ss_pred HHHHHHHHHhChhhhcCCcEEEEEEeecCCC----cccEEEECCCCCEEEEEEecC
No 27
>PF01939.20 ; NucS_C ; Endonuclease NucS C-terminal domain
Probab=96.67 E-value=0.011 Score=36.13 Aligned_cols=35 Identities=37% Similarity=0.567 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 19 GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 19 G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
|+..++++..+... ++|+++.|++|.++++|+|.+
T Consensus 19 ~~~~~~~~~~~~~~----~iDl~~~~~~~~~~ivE~K~~ 53 (121)
T NUCS_METTH/132 19 GFRPVAREYAVTSG----FIDILGKDENGSLMIIELKSR 53 (121)
T ss_pred CcEEEeEEeecCCC----cceEEEEcCCCCEEEEEEecC
No 28
>1Y88_A Hypothetical protein AF1548; AF1548, APC5567, Structural genomics, Protein Structure Initiative, PSI, Midwest Center for Structural Genomics Center, MCSG, UNKNOWN; HET: SO4; 1.85A {Archaeoglobus fulgidus} SCOP: c.52.1.30, a.60.4.3, l.1.1.1
Probab=96.62 E-value=0.037 Score=36.72 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
...|..++..+.+.|+..|| .+.....+...+....+|+++.. ++..+++|||.
T Consensus 14 ~~~~~~fe~lv~~ll~~~G~-~v~~~~~~~~~~~~~~iDi~a~~-~~~~~~ve~K~ 67 (199)
T 1Y88_A 14 RENLYFQGHMVARLLEEHGF-ETKTNVIVQGNCVEQEIDVVAER-DGERYMIECKF 67 (199)
T ss_dssp --CHHHHHHHHHHHHHTTTC-EEEEEEEEECSSSEEEEEEEEEE-TTEEEEEEECC
T ss_pred CCCchHHHHHHHHHHHHCCC-EEEeceEEeCCccceEEEEEEEE-CCEEEEEEEEe
No 29
>5GKE_A Endonuclease EndoMS; ENDONUCLEASES, DNA-BINDING, HYDROLASE-DNA complex; HET: MPD; 2.4A {Thermococcus kodakarensis KOD1}
Probab=96.49 E-value=0.026 Score=40.68 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHHHHHC------CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKN------GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~------G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
|....+.|..+ |+.++.+|..+... ++||++.|.+|++++||+|.+
T Consensus 132 E~~L~~~l~~np~~i~~gl~~i~~e~~~~~g----~iDll~~d~~g~~vvIElK~~ 183 (252)
T 5GKE_A 132 EAEMAELIFENPEVIEPGFKPLFREKAIGTG----IVAVLGRDSDGNIVVLELKRR 183 (252)
T ss_dssp HHHHHHHHHHCGGGTCTTCEEEEEEEECSSS----EEEEEEECTTSCEEEEEECSS
T ss_pred HHHHHHHHHhChhhcCCCceeeEEEeecCCC----cccEEEECCCCCEEEEEEecC
No 30
>4QBO_A Nuclease; nuclease, HYDROLASE; 1.3A {Streptococcus phage P9} SCOP: c.52.1.35, l.1.1.1
Probab=96.27 E-value=0.006 Score=36.02 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred EEEEEECCCCCEEEEEEEcCCCCCCcCcc
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNGKGRLTKGQK 66 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g~a~lT~NQ~ 66 (68)
+|+++..|+|. .++|+|.....++++|.
T Consensus 33 pDl~~~~~~g~-~~iE~K~~~~~~~~~Q~ 60 (92)
T 4QBO_A 33 PDRIVVMNTGT-FFVEVKAPGKKPRPSQV 60 (92)
T ss_dssp CSEEEEETTEE-EEEEECCTTCCCCHHHH
T ss_pred CcEEEEecCCe-EEEEEeCCCCCCCHHHH
No 31
>PF03749.17 ; SfsA ; Sugar fermentation stimulation protein RE domain
Probab=96.25 E-value=0.041 Score=36.41 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHC------CCeEEEEEEEEeeCC-EEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 9 IKAKADLKKN------GFTVVAEEVTMKVNG-KRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 9 ~~a~~~l~~~------G~~iv~~eVti~~~G-~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
..+...|++. +|..+.+|++ -| ...|+||+..+ ++.-.+||||+
T Consensus 5 ~lv~~~l~~~~l~~l~~~~~i~rE~~---~~~~~sR~Df~l~~-~~~~~~iEVKs 55 (141)
T W8KTG3_9GAMM/8 5 ALVEEAIRSGHLPTLANPTELRREVR---YGRNRSRIDLLLTL-DDTPCYVEVKN 55 (141)
T ss_pred HHHHHHHHCCCCcccCCCceeEeeee---eCCCceEEEEEEEe-CCcceEEEEee
No 32
>6SCE_A Uncharacterized protein; CRISPR CARF DNA Nuclease cyclic oligoadenylate Thermus thermophilus, DNA; HET: MSE; 1.83A {Thermus thermophilus HB8}
Probab=96.06 E-value=0.017 Score=46.37 Aligned_cols=52 Identities=13% Similarity=-0.010 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred chhHHHHHHHHHHHHCCC--------eEEEEEE----EEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 3 SGRRGVIKAKADLKKNGF--------TVVAEEV----TMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G~--------~iv~~eV----ti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.|.+.|..+...|++.+. .-+...| .+.. ...++|+++.. ++.+++||||++
T Consensus 497 ~G~WLE~~V~~~l~~~~~~~~~~~~~ddv~~~v~~~w~i~~--~~nEiDVl~~~-~~~L~~IECKtg 560 (638)
T 6SCE_A 497 KGLPLEYAVYSHLNAHLAPKGGQARMGGHLVPLGGNEALAP--QSTEVDGVFFH-RGALWFVECKPT 560 (638)
T ss_dssp TTHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEC------------CEEEEEEEE-TTEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhhcccCccCccccEeccccCccccCC--CCCceEEEEEE-CCEEEEEEEecC
No 33
>PF13635.10 ; DUF4143 ; Domain of unknown function (DUF4143)
Probab=95.93 E-value=0.078 Score=33.21 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred hhHHHHHHHHHHHHCCCeEEEEEEEEeeCCE-EEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTVVAEEVTMKVNGK-RIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~-r~r~Diva~d~~G~i~~~EvK~g 57 (68)
|...|..+...|...++. ....+..-.... +-++|||+..++|.+..+|||.+
T Consensus 114 ~~~~e~~v~~~l~~~~~~-~~~~~~~~~~~~~~~eiDfv~~~~~~~~~~~evk~~ 167 (167)
T C5BX94_BEUC1/1 114 GFHFESMALRDLRIYSQP-LGATLSSWRDTQANKEIDAILELPNGTWAAFEFKLG 167 (167)
T ss_pred HHHHHHHHHHHHHHHhcc-cCCceeEeecCCCCceeEEEEEeCCCcEEEEEEEeC
No 34
>PF03838.18 ; RecU ; Recombination protein U
Probab=95.59 E-value=0.035 Score=37.21 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred chhHHHHHH----HHHHHHCCCeEEEEEEEEeeC--------------CEEEEEEEEEECCCCCEEEEEEEcC-CCC---
Q FD01543185_039 3 SGRRGVIKA----KADLKKNGFTVVAEEVTMKVN--------------GKRIRADIVAKDANGNYHVFEVKNG-KGR--- 60 (68)
Q Consensus 3 ~G~~Ge~~a----~~~l~~~G~~iv~~eVti~~~--------------G~r~r~Diva~d~~G~i~~~EvK~g-~a~--- 60 (68)
+|...|+.. ..++++.+.-+......+.+. ...--+|+++.. +|..++||||+. +.+
T Consensus 1 rG~~~E~~i~~~~~~y~~~~~a~i~k~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~~~~~-~g~~~~~E~K~~~~~~~~~ 79 (161)
T R5YL25_9FIRM/1 1 RGSTLEDMINMSNESYREKGLALIQKIPTPITPVRIDQQTRHITLAYFDQQSTVDYIGAV-QGIPVCFDAKECATDTFPM 79 (161)
T ss_pred ChhHHHHHHHHHHHHHHHhCeEeEEEcCCCeEEEEecCCCCeEEEEEECCCCCccEEEEE-CCEEEEEEccccCCCccCh
Q ss_pred --CCcCc
Q FD01543185_039 61 --LTKGQ 65 (68)
Q Consensus 61 --lT~NQ 65 (68)
++++|
T Consensus 80 ~~i~~~Q 86 (161)
T R5YL25_9FIRM/1 80 MNIHEHQ 86 (161)
T ss_pred hhCcHHH
No 35
>1ZP7_B Recombination protein U; recombination, DNA-binding protein, resolvase, DNA BINDING PROTEIN; 2.25A {Bacillus subtilis} SCOP: c.52.1.28
Probab=95.56 E-value=0.087 Score=36.87 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CcchhHHHHHH---HHHHHHCCCeEEEEEEEEeeCCEEEE---------------------EEEEEECCCCCEEEEEEEc
Q FD01543185_039 1 AYSGRRGVIKA---KADLKKNGFTVVAEEVTMKVNGKRIR---------------------ADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~~a---~~~l~~~G~~iv~~eVti~~~G~r~r---------------------~Diva~d~~G~i~~~EvK~ 56 (68)
..+|..+|... ...+.+.|+-.+.+--+ ...... +|+++.. +|..++||||+
T Consensus 29 ~n~G~~fE~~i~~s~~~y~~~g~a~i~r~~~---~~~~~~~~~~~~~~g~~~~~~~~~k~~~D~i~~~-~g~~~~~E~K~ 104 (206)
T 1ZP7_B 29 SNRGMTLEDDLNETNKYYLTNQIAVIHKKPT---PVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKE 104 (206)
T ss_dssp -----CHHHHHHHHHHHHHHTTSCEEEECCC---CEEC------------CCCCEECCCSSCSEEEEE-TTEEEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHcCcEEEEECCC---CceEeeecCCCccCCeEEEEEecCCCCCCEEEEE-CCeEEEEEEee
Q ss_pred CCC-------CCCcCc
Q FD01543185_039 57 GKG-------RLTKGQ 65 (68)
Q Consensus 57 g~a-------~lT~NQ 65 (68)
... .++++|
T Consensus 105 t~~~~~~~~~~i~~~Q 120 (206)
T 1ZP7_B 105 TKNKTSFPLQNFHDHQ 120 (206)
T ss_dssp CCCSSEEEGGGSCHHH
T ss_pred CCCCCccchhhCCHHH
No 36
>4DAP_A Sugar fermentation stimulation protein A; OB fold, PD-(D/E)xK domain, nuclease, DNA BINDING PROTEIN; 2.2A {Escherichia coli}
Probab=95.44 E-value=0.16 Score=36.54 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHC------CCeEEEEEEEEeeCC-EEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 8 VIKAKADLKKN------GFTVVAEEVTMKVNG-KRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 8 e~~a~~~l~~~------G~~iv~~eVti~~~G-~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
...+...|++. +|..+.+|++ -| ...|+||+..+++|.-.++|||+
T Consensus 86 n~l~~~~l~~~~l~~l~~~~~~~rE~~---~~~~~sR~Df~l~~~~~~~~~iEVKs 138 (234)
T 4DAP_A 86 NRLTKEAILNESISELSGYSSLKSEVK---YGAERSRIDFMLQADSRPDCYIEVKS 138 (234)
T ss_dssp HHHHHHHHHTTCSGGGCSCSEEEEEEE---CCC--CEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCccccCCcEEEeEee---cCCCcceEEEEEEeCCCCeEEEEEEE
No 37
>PF20366.2 ; DUF6661 ; Family of unknown function (DUF6661)
Probab=95.38 E-value=0.034 Score=38.06 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred EEEEEECCCCCEEEEEEEc
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~ 56 (68)
+|||+.+ ++.++|||||+
T Consensus 17 VDFi~~~-~~~l~lIEVKd 34 (174)
T A0A416JQ45_9FI 17 VDFISVD-KDKIAFIEVKN 34 (174)
T ss_pred eEEEEEe-CCeEEEEEEee
No 38
>4DA2_A Sugar fermentation stimulation protein homolog; OB fold, PD-(D/E)xK domain, nuclease, DNA BINDING PROTEIN; 1.8A {Pyrococcus furiosus}
Probab=95.32 E-value=0.13 Score=36.85 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHHC------CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 8 VIKAKADLKKN------GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 8 e~~a~~~l~~~------G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
...+...|++. ||..+.+|++ -| ..|+||+..+ ++.-.++|||+
T Consensus 85 n~i~~~~l~~~~l~~l~~~~~~~rE~~---~~-~sR~Dfll~~-~~~~~~vEVKs 134 (231)
T 4DA2_A 85 GKAFEKIIEKELLPELEGCRIIKREPR---VG-ESRLDYLIEC-SKGEIFVETKS 134 (231)
T ss_dssp HHHHHHHHHTTCSGGGTTCEEEEESCE---ET-TEECSEEEEC-SSCEEEEEEEE
T ss_pred HHHHHHHHHhhcChhhcCCcEEEeccc---cC-cceeEEEEEc-CCcEEEEEEEE
No 39
>PF14281.10 ; PDDEXK_4 ; PD-(D/E)XK nuclease superfamily
Probab=95.31 E-value=0.1 Score=34.05 Aligned_cols=63 Identities=21% Similarity=0.031 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CcchhHHHHHHH-HHHHHCCC---eEEEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEEcCCCCCCcCc
Q FD01543185_039 1 AYSGRRGVIKAK-ADLKKNGF---TVVAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVKNGKGRLTKGQ 65 (68)
Q Consensus 1 ~~~G~~Ge~~a~-~~l~~~G~---~iv~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK~g~a~lT~NQ 65 (68)
+..|....+.-. ..+..... ....-+|.-+. .+..-|+||+..+ +....+||.|-. +.++++|
T Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~e~~~~~~~r~Dl~i~~-~~~~iiIE~Ki~-a~~~~~Q 97 (173)
T R5I4J0_9FIRM/2 30 HGAGAEYLKIFLRDCLGMEKMDTKLADQAIVTAEYAIDDERRIDIVIEI-GSYFLPIEVKIY-AADQKSQ 97 (173)
T ss_pred CccchHHHHHHHHHHhCcchhccccccceEEEEeEecCCCCceeEEEEe-CCEEEEEEecCC-ccccccH
No 40
>PF03008.18 ; DUF234 ; Archaea bacterial proteins of unknown function
Probab=95.00 E-value=0.19 Score=30.50 Aligned_cols=61 Identities=18% Similarity=-0.102 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred hhHHHHHHHHHHHHCC--CeEEEE--EEEEee-CCEEEEEEEEEECCCCC-EEEEEEEcCCCCCCcC
Q FD01543185_039 4 GRRGVIKAKADLKKNG--FTVVAE--EVTMKV-NGKRIRADIVAKDANGN-YHVFEVKNGKGRLTKG 64 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G--~~iv~~--eVti~~-~G~r~r~Diva~d~~G~-i~~~EvK~g~a~lT~N 64 (68)
|..+|+.+.+.|...- ...-.. -.++-- -+....+|+|+.|.+|+ +.+.|+|-...+....
T Consensus 34 ~~~fe~i~~e~l~~~~~~~~l~~~~~~~~iG~~w~~~~eiDvv~~~~~~~~~~~ge~k~~~~~~~~~ 100 (101)
T Q2FNE0_METHJ/3 34 GSLFERMVIDLLFYLNGAGKLPFHCVFSSVKRWWHKGEEIDIVGISETDSSVLFCEVKWQDNVNGKK 100 (101)
T ss_pred hHHHHHHHHHHHHHhhhcCCCCCccccccccccccCCCeeEEEEEeCCCCEEEEEEEEecCCccccc
No 41
>PF09572.14 ; RE_XamI ; XamI restriction endonuclease
Probab=94.98 E-value=0.29 Score=36.49 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred HHHHHHHHHHCCCeEEE----------------EEEEEee-C------CEEEEEEEEEECCCCC----EEEEEEEcCCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVA----------------EEVTMKV-N------GKRIRADIVAKDANGN----YHVFEVKNGKGR 60 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~----------------~eVti~~-~------G~r~r~Diva~d~~G~----i~~~EvK~g~a~ 60 (68)
|....++|.+.||+-+. -.-.+.+ . .+.+.+|+|.+-.+|. +.+||||.++..
T Consensus 126 e~~v~~~L~~~Gy~~v~~~~i~~~~~~~pg~~~f~~~~~~~~~~~~~~~v~~~~Divi~~~d~r~~~~~l~IEcK~snd~ 205 (257)
T K9U9Q7_CHRTP/5 126 LREIAAWLNRRGYRLLPADRRVRFDEMLPGTYSFRLNIPVNLSSEDGKTVNIPVDAVIMRNTARRGDRPLLVEAKSAGDF 205 (257)
T ss_pred HHHHHHHHHHCCCEEcCCCCCcchhHcCCCceEEEEEeEEeecCCCCceeeecccEEEEeCCCCCCCccEEEEEeccCCC
Q ss_pred CCcC
Q FD01543185_039 61 LTKG 64 (68)
Q Consensus 61 lT~N 64 (68)
...|
T Consensus 206 tNs~ 209 (257)
T K9U9Q7_CHRTP/5 206 TNVN 209 (257)
T ss_pred cchh
No 42
>PF13156.10 ; Mrr_cat_2 ; Restriction endonuclease
Probab=94.96 E-value=0.11 Score=29.83 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred chhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECC-CCCEEEEEEE
Q FD01543185_039 3 SGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDA-NGNYHVFEVK 55 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~-~G~i~~~EvK 55 (68)
.+..++. ....|...||. ....+....+|+++..+ ++..+++|||
T Consensus 3 ~~~~fe~-~~~~l~~~g~~-------~~~~~~~~~~D~~~~~~~~~~~~~v~~k 48 (125)
T K7W6A7_9NOST/3 3 ENFYKDH-FSQVWLWMDFP-------KRGNMPDTGIDLVAVERYTGDYWAIQCK 48 (125)
T ss_pred chhhHHH-hHhhhhhccCC-------CCCCCCCCceeEEEEEccCCCEEEEEEe
No 43
>2INB_A hypothetical protein; ZP_00107633.1, hypothetical protein, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, Structural; HET: GOL, MSE; 1.6A {Nostoc punctiforme} SCOP: c.52.1.32
Probab=94.80 E-value=0.034 Score=37.38 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEEC-----CCCCEEEEEEEc
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKD-----ANGNYHVFEVKN 56 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d-----~~G~i~~~EvK~ 56 (68)
+..-+.++..|++.|++|.....++..++.+..+|+-|.. .++.-.++|+|+
T Consensus 6 D~~H~~v~~AL~kdgW~It~dp~~i~~~~~~~~~Dl~ae~~~~a~~~~~~I~vEiKs 62 (140)
T 2INB_A 6 DVFHQVVKIALEKDGWQITNDPLTISVGGVNLSIDLGAEKLIAAEREGEKIAVEVKS 62 (140)
T ss_dssp CHHHHHHHHHHHHTTCEEEESSCCCEETTEEC-------CCEEEEETTEEEEEEECC
T ss_pred HhhhHHHHHHHHhCCeEEecCCceeeecCccceechhhHHHHhccccCceEehhHHH
No 44
>PF08774.15 ; VRR_NUC ; VRR-NUC domain
Probab=94.61 E-value=0.049 Score=33.77 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EEEEEECCCCC--------------EEEEEEEcCCCCCCcCcc
Q FD01543185_039 38 ADIVAKDANGN--------------YHVFEVKNGKGRLTKGQK 66 (68)
Q Consensus 38 ~Diva~d~~G~--------------i~~~EvK~g~a~lT~NQ~ 66 (68)
+|++...+.+. ..|||+|..+..++++|+
T Consensus 65 PDl~~~~~~~~~~~~~~~~~~~~~~~~~iEvK~~~~~~s~~Q~ 107 (127)
T FAN1_DICDI/958 65 PDLLLWKLNNNNDDDIDDKNNNNSSIKFVEVKGTGDRLRDQQR 107 (127)
T ss_pred CcEEeEeCCCCCCcccccccCCCceEEEEEecCCCCCCCHHHH
No 45
>PF08814.14 ; XisH ; XisH protein
Probab=94.54 E-value=0.043 Score=36.46 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEEC-----CCCCEEEEEEEc
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKD-----ANGNYHVFEVKN 56 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d-----~~G~i~~~EvK~ 56 (68)
+..-+.....|++.|++|......++.++.+..+|+-|.. ..++..++|+|+
T Consensus 5 D~~h~~v~~aL~kdgW~It~dp~~i~~~~~~~~~Dl~ae~l~~a~~~~~kI~VEiKs 61 (132)
T B2J848_NOSP7/1 5 DIFHDAVKRALENEGWLITNDPLFLRFGGLDMYIGLGAEKVLAAERNQEKIAVEVKS 61 (132)
T ss_pred HhhhHHHHHHHHhcCcEEecCccccccCCccceecchHHHHHHhccccceeehhhcc
No 46
>PF07788.15 ; PDDEXK_10 ; PD-(D/E)XK nuclease superfamily
Probab=94.07 E-value=0.19 Score=29.13 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred EEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~ 56 (68)
.++|+++.| + .++++|+|+
T Consensus 3 ~EiDi~~~~-~-~~vi~EvK~ 21 (74)
T Q96ZS4_SULTO/2 3 VEIDVVLSD-G-KVILVELTA 21 (74)
T ss_pred EEEEEEEEC-C-EEEEEEEEe
No 47
>5Y7Q_A Fanconi-associated nuclease 1 homolog; Nuclease, HYDROLASE-DNA complex; 2.7A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)}
Probab=93.92 E-value=0.078 Score=42.00 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred EEEEEECC-CCCEEEEEEEcCCCCCCcCcc
Q FD01543185_039 38 ADIVAKDA-NGNYHVFEVKNGKGRLTKGQK 66 (68)
Q Consensus 38 ~Diva~d~-~G~i~~~EvK~g~a~lT~NQ~ 66 (68)
+|++..++ +|.+.|||||+.+..|+++|+
T Consensus 527 PDL~lw~~~~~~~~fvEVK~p~D~Ls~~Q~ 556 (580)
T 5Y7Q_A 527 PDLIQFWPAQRRYRMVEVKGPGDRLQDNQL 556 (580)
T ss_dssp CSEEEEETTTTEEEEEEEECTTCCCCHHHH
T ss_pred CcEEEEEcCCCeEEEEEEECCCCCCCHHHH
No 48
>PF06356.15 ; DUF1064 ; Protein of unknown function (DUF1064)
Probab=93.59 E-value=0.92 Score=28.88 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHHHHHHHC----CCeEEEEEEEEee------------------CCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 6 RGVIKAKADLKKN----GFTVVAEEVTMKV------------------NGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 6 ~Ge~~a~~~l~~~----G~~iv~~eVti~~------------------~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
..|......|+.. ...-+..+..+.+ ...+..+||+ .+++|.+.++|+|.. +..+
T Consensus 19 ~~E~~~~~~L~~~~~~g~I~~~~~q~~f~l~~~~~~~~~~~~~g~~~~~~~~YtpDF~-~~~~g~~~viEvKG~~t~~~ 96 (120)
T E6X1Q1_NITSE/2 19 RAEGRRYQELRLLERAGKIQDLQLQPVFYLAERYKIATNTTKNGKSTVGGLKYTADFQ-YVQDGRMVVEDVKGMVTTDY 96 (120)
T ss_pred HHHHHHHHHHHHHHHcCCccEEEEcCeEEeccCceeccccccCCeeeeceeEEEccEE-EECCCeEEEEEcCCCCCcch
No 49
>PF09520.14 ; RE_TdeIII ; Type II restriction endonuclease, TdeIII
Probab=93.55 E-value=0.59 Score=33.36 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred hhHHHHHHHHHHHHCCCeEEEEEEEEee-------------------------------------------CCEEEEEEE
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTVVAEEVTMKV-------------------------------------------NGKRIRADI 40 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~iv~~eVti~~-------------------------------------------~G~r~r~Di 40 (68)
|....+.....+...+|.+..++..+.. ......+||
T Consensus 56 G~~~~E~ia~~ia~~~~~~~~~~~~~~~~l~~~~~~~I~~~i~~~~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~vDl 135 (240)
T I6Z6J5_MELRP/4 56 GLTIFEPVALSIAESKFKVAKSQYKVGDRISEDSLYVIQKIMDNLTSATTRPDKIKELELIRQSINPSKTRKTKPTVTDL 135 (240)
T ss_pred CCccHHHHHHHHHhhcceeeccCceeeeeCCHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCccccceeeE
Q ss_pred EEECCCCCEEEEEEEcC
Q FD01543185_039 41 VAKDANGNYHVFEVKNG 57 (68)
Q Consensus 41 va~d~~G~i~~~EvK~g 57 (68)
.-.|.+|..+++|+|++
T Consensus 136 ~~~~~~g~~~~~eiKs~ 152 (240)
T I6Z6J5_MELRP/4 136 FLQDRKGNTFLIDIKTA 152 (240)
T ss_pred EEECCCCCEEEEEEecC
No 50
>4REC_A Fanconi-associated nuclease 1; HJC, TPR, SAP, structure specific nuclease, FANCID2, nucleus, Hydrolase-DNA complex; 2.2A {Homo sapiens}
Probab=93.51 E-value=0.09 Score=41.68 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred EEEEEECC-CCCEEEEEEEcCCCCCCcCcc
Q FD01543185_039 38 ADIVAKDA-NGNYHVFEVKNGKGRLTKGQK 66 (68)
Q Consensus 38 ~Diva~d~-~G~i~~~EvK~g~a~lT~NQ~ 66 (68)
+||+..++ ++.+.|||||+.+.+|+++|+
T Consensus 589 PDL~~~~~~~~~~~fvEVK~p~D~ls~~Q~ 618 (647)
T 4REC_A 589 PALVVWNSQSRHFKLVEVKGPNDRLSHKQM 618 (647)
T ss_dssp CSEEEECTTTCCEEEEEEECTTCCCCHHHH
T ss_pred CCEEEEecCCCeEEEEEEcCCCCCCCHHHH
No 51
>PF04471.16 ; Mrr_cat ; Restriction endonuclease
Probab=93.01 E-value=1 Score=25.65 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred chhHHHHHHHHHHHHC-CCeEEEEEEEEeeCCEEEEEEEE-EECCCC---C-EEEEEEEc
Q FD01543185_039 3 SGRRGVIKAKADLKKN-GFTVVAEEVTMKVNGKRIRADIV-AKDANG---N-YHVFEVKN 56 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~-G~~iv~~eVti~~~G~r~r~Div-a~d~~G---~-i~~~EvK~ 56 (68)
++..++......|+.. ||. .+.....+....+|++ +.. ++ . ..++|+|.
T Consensus 6 ~~~~fe~~v~~~l~~~~g~~----~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~v~~k~ 60 (125)
T A5CYT0_PELTS/1 6 QHREFKAYVRDILAGLPGFQ----EVRLAGDGKDGSAAGAGIDL-EGIYRGVPVAVRCVR 60 (125)
T ss_pred chHHHHHHHHHHHhcCCCcc----eeEEecCCCCCceeeEEEec-CcccCCCcEEEEEEE
No 52
>4XQK_B LlaBIII; ATP-dependent restriction-modification enzyme, Type ISP restriction-modification enzyme, ATPase, HYDROLASE-DNA complex; 2.7A {Lactococcus lactis subsp. cremoris}
Probab=92.98 E-value=0.14 Score=43.67 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CcchhHHHHHHHHHHHHCC-CeEEEEEE--------EEeeCCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNG-FTVVAEEV--------TMKVNGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G-~~iv~~eV--------ti~~~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
+.+|..+|..+...|+..| |...-.+| .....+.-.-+|+|+.+.+|..++|+||.
T Consensus 31 ~~~g~~FE~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~GiDlv~~~~~~~~~~iQcK~ 95 (1578)
T 4XQK_B 31 RERGTLFEKLTLAYLKNEPTYKALYQNVWLLSEVPESYGIPKKDTGVDLVAEQKNGDLVAIQAKF 95 (1578)
T ss_dssp ---CHHHHHHHHHHHHHSHHHHHHEEEEESSCCC-------------CEEEEETTSCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHChhHHHHhceeeeHHhccHHHCCCccceeeEEEEEEeCCeEEEEEEEe
No 53
>4QBL_E VRR-NUC; Nuclease, HYDROLASE; HET: MSE; 2.0A {Psychrobacter sp.} SCOP: c.52.1.35
Probab=92.68 E-value=0.2 Score=32.82 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred EEEEEECCCCCE--EEEEEE-cCCCCCCcCcc
Q FD01543185_039 38 ADIVAKDANGNY--HVFEVK-NGKGRLTKGQK 66 (68)
Q Consensus 38 ~Diva~d~~G~i--~~~EvK-~g~a~lT~NQ~ 66 (68)
+||+...+.|.. .+||+| .....++++|.
T Consensus 69 pDl~~~~~~~~~~~~~iE~K~~~~~~~s~~Q~ 100 (145)
T 4QBL_E 69 PDLIIDIARGAYHGLRIEIKKDGNSYATPAQK 100 (145)
T ss_dssp CSEEECCCBTTCSCEEEEEESSTTCCCCHHHH
T ss_pred CcEEEEecCCceeEEEEEEEeCCCCCCCHHHH
No 54
>8D3P_I CRISPR-associated exonuclease Cas4; CRISPR Cas adaptation type I-C, HYDROLASE-DNA complex; 4.26A {Alkalihalobacillus halodurans C-125}
Probab=92.28 E-value=3.1 Score=26.62 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred hhHHHHHHHHHH--HHCCCeEEEEEEEEeeC--CEEEEEEEEEECC----------CCC--EEEEEEEcC
Q FD01543185_039 4 GRRGVIKAKADL--KKNGFTVVAEEVTMKVN--GKRIRADIVAKDA----------NGN--YHVFEVKNG 57 (68)
Q Consensus 4 G~~Ge~~a~~~l--~~~G~~iv~~eVti~~~--G~r~r~Diva~d~----------~G~--i~~~EvK~g 57 (68)
|....+.....+ +..+......++.+... ....++|+|..++ +|. +.++|.|++
T Consensus 42 G~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~D~v~~~~~~~~~~~~~~~g~~~~~ivd~K~~ 111 (218)
T 8D3P_I 42 GQHLHKKADQPFMKEKRGSKLTVRAMPIQSKNLQISGICDVVEFVQDSEGIELSGVSGSYKAFPVEYKRG 111 (218)
T ss_dssp HHHHHHHTCCSSCCEECSSEEEECSEEEEETTTTEEEEESEEEEEECSSSCBCTTSSSBEEEEEEEEESS
T ss_pred HHHHHHHHHHhhhhhhcCCceEEEEeeeeccccceEEEEeEEEEEeCCCCceecccCCceEEEEEEeecC
No 55
>PF13366.10 ; PDDEXK_3 ; PD-(D/E)XK nuclease superfamily
Probab=91.54 E-value=3.3 Score=25.41 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEee--CC----EEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKV--NG----KRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~--~G----~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
......+|+..|. ...++..+.+ +| .+.++||+. ....++|+|+
T Consensus 28 ~~~l~~~l~~~~i-~~~~~~~~~~~~~g~~i~~~~~~D~iv----~~~ivveik~ 77 (118)
T Q39QK9_GEOMG/1 28 EACLAYELSEAGL-HVERQKVLPVRYKNINLDDGLRMDLVV----ENRIILELKC 77 (118)
T ss_pred HHHHHHHHHHCCC-eEEEeeeeeEEeCCEeCCcceEEEEEE----cCeEEEEEEe
No 56
>2FCO_A recombination protein U (penicillin-binding protein related factor A); flexibility, HYDROLASE; 1.4A {Geobacillus kaustophilus} SCOP: c.52.1.28
Probab=91.33 E-value=0.28 Score=34.18 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred EEEEEECCCCCEEEEEEEcCCC-------CCCcCc
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNGKG-------RLTKGQ 65 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g~a-------~lT~NQ 65 (68)
+|+++.. +|..++||||+... .++++|
T Consensus 85 ~D~~g~~-~G~~i~~E~K~t~~~~~f~l~~i~~~Q 118 (200)
T 2FCO_A 85 TDYNGVY-RGKYIDFEAKETKNKTAFPLKNFHAHQ 118 (200)
T ss_dssp CSEEEEE-TTEEEEEEEEEESCSSEEEGGGSCHHH
T ss_pred CCEEEEE-CCeEEEEEEecCCCCCccccccCCHHH
No 57
>4IC1_F Uncharacterized protein; Cas4, CRISPR, MCSG, Exonuclease, PSI-Biology, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, Midwest Center for Structural Genomics; HET: SF4, MSE, MN; 2.35A {Sulfolobus solfataricus}
Probab=91.26 E-value=3.7 Score=25.41 Aligned_cols=54 Identities=28% Similarity=0.246 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred hhHHHHHHHHHHHHCC--CeEEEEEEEEee-CC---EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 4 GRRGVIKAKADLKKNG--FTVVAEEVTMKV-NG---KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G--~~iv~~eVti~~-~G---~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
|..-.......+...+ ......+..+.+ .+ .+.++|+|..+++|.+.++|.|++
T Consensus 62 G~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~D~i~~~~~g~~~i~d~Kt~ 121 (206)
T 4IC1_F 62 GDILHLGLESVLKGNFNAETEVETLREINVGGKVYKIKGRADAIIRNDNGKSIVIEIKTS 121 (206)
T ss_dssp HHHHHHHHHHHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC---CEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCcccceeeEEEEeEECCEEEEEEEEeeEEEECCCCCEEEEEEecC
No 58
>PF15516.10 ; BpuSI_N ; BpuSI N-terminal domain
Probab=90.19 E-value=1.2 Score=30.11 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEEC--CCCCEEEEEEEcCCCCCC--cCccCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKD--ANGNYHVFEVKNGKGRLT--KGQKGS 68 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d--~~G~i~~~EvK~g~a~lT--~NQ~~a 68 (68)
.+.....|...||..-.........| .-|+|++..+ ...-+.+||+|.....+. ..+.+|
T Consensus 16 ~~~l~~lL~~lg~~~~~~~~~~~~~g-~~r~D~vl~~~~~~~~~~vVE~K~~~~~l~~~~~~~Qa 79 (152)
T W3AKY3_9FIRM/2 16 EDALNQALSALGLSATYEAKHHIYTG-SLEMDFVVINKSTGRYLCVVEVKRTPSDVQSTRYQFQA 79 (152)
T ss_pred HHHHHHHHHHcCCChhheEEeeeccC-CCeeCEEEEECCCCcEEEEEEEecCCCCcCChhHHHHH
No 59
>1M0D_B Endodeoxyribonuclease I; Holliday junction resolvase, Homodimer, Domain Swapped, Composite active site, hydrolase; HET: SO4; 1.9A {Enterobacteria phage T7} SCOP: c.52.1.17
Probab=89.89 E-value=3.5 Score=26.87 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEee----CCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKV----NGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~----~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
|......|+..|-...-+..++.. ...+..+||+. ++| .++|+|.
T Consensus 9 E~~~~~~Le~~~i~~~~qp~~~~~~~~~~~~~Y~PDF~v--~dg--~~iEvKg 57 (138)
T 1M0D_B 9 EDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLL--PNG--IFVETKG 57 (138)
T ss_dssp HHHHHHHHHHTTCCCEESCEEEEEEECCEEEEECCSEEC--TTS--CEEEEES
T ss_pred HHHHHHHHHHCCCCeEEcCeEEecccCCceEEEcccEEe--cCC--eEEEeeC
No 60
>PF14082.10 ; SduA_C ; Shedu protein SduA, C-terminal
Probab=89.83 E-value=0.68 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCEEEEE-EEEEECCCCCEEEEEEEcC-CCCCCcC
Q FD01543185_039 32 NGKRIRA-DIVAKDANGNYHVFEVKNG-KGRLTKG 64 (68)
Q Consensus 32 ~G~r~r~-Diva~d~~G~i~~~EvK~g-~a~lT~N 64 (68)
.+...++ ||+..+ ++.++|||+|.. ..-++.+
T Consensus 38 ~~~~~~~pDf~~~~-~~~~~ivEiK~p~~~~~~~~ 71 (170)
T Q0APR0_MARMM/2 38 DNKNKPVVDFLMTF-TDYTALVEIKKPSTPIFRKG 71 (170)
T ss_pred CCCCCccccEEEEe-CCCEEEEEeCCCCCccccCC
No 61
>PF10926.12 ; DUF2800 ; Protein of unknown function (DUF2800)
Probab=89.82 E-value=4.6 Score=28.24 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEee--CC--EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKV--NG--KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~--~G--~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
....+.....+...+...+..|..+.. .+ .+-++|+|..+ +|.+++++.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~G~iD~v~~~-~~~~~iiD~Ktg 137 (369)
T Q838W4_ENTFA/6 82 TAYCDLVEERVNQYENATVELEQKVDFSKWVPEGFGTSDVVVLS-DKTIEIIDLKYG 137 (369)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEeehhhcCCCCceEeeEEEEe-CCEEEEEeCCCC
No 62
>5ZYT_C Mitochondrial genome maintenance exonuclease 1; human MGME1, DNA complex, DNA exonuclease, DNA BINDING PROTEIN; 2.702A {Homo sapiens}
Probab=89.10 E-value=6.4 Score=29.38 Aligned_cols=51 Identities=22% Similarity=0.072 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEee--CCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKV--NGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~--~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
....+.....|+.-+ .+...|..+.. -+.+-++|+|+.. +|.+++|+.|++
T Consensus 183 ~~~~~s~~~~l~~~~-~~~~~E~~v~~~~l~~~G~iD~v~~~-~g~l~IIDwKT~ 235 (324)
T 5ZYT_C 183 SGYIESVQHILKDVS-GVRALESAVQHETLNYIGLLDCVAEY-QGKLCVIDWKTS 235 (324)
T ss_dssp SHHHHHHHHHHTTEE-EEEEEEEEEEETTTTEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcc-CcEEEEEEEEcCCceeEEEEEEEEEE-CCEEEEEEEcCC
No 63
>PF09254.15 ; FokI_cleav_dom ; FokI, cleavage domain
Probab=88.68 E-value=2.3 Score=30.17 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred hhHHHHHHHHHH-HHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcCCCCCC
Q FD01543185_039 4 GRRGVIKAKADL-KKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNGKGRLT 62 (68)
Q Consensus 4 G~~Ge~~a~~~l-~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g~a~lT 62 (68)
+..+|......| +.-|| .-+.+ .|.+ ++|+++.++.+...+||+|+...+++
T Consensus 38 ~~~FE~~~~~~F~~~lgf---~~~~~---gg~~-~pD~i~~~~~~y~iiiDaKs~~~gy~ 90 (193)
T G8PBE9_PEDCP/4 38 YSQFEQLTMELVLKHLDF---DGKPL---GGSN-KPDGIAWDNDGNFIIFDTKAYNKGYS 90 (193)
T ss_pred HHHHHHHHHHHHHHHcCC---CCEec---CCCC-CCCEEEECCCCCEEEEEeccCCCCCC
No 64
>PF04556.16 ; DpnII ; DpnII restriction endonuclease
Probab=88.56 E-value=3.3 Score=30.24 Aligned_cols=57 Identities=25% Similarity=0.217 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred chhHHHHHHHHHHHHCCC----eEEEE----------EEEEee----CCEEEEEEEEEECCCCCEEEEEEEcC-CCC
Q FD01543185_039 3 SGRRGVIKAKADLKKNGF----TVVAE----------EVTMKV----NGKRIRADIVAKDANGNYHVFEVKNG-KGR 60 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~G~----~iv~~----------eVti~~----~G~r~r~Diva~d~~G~i~~~EvK~g-~a~ 60 (68)
+|...|+.....|++.+. ....+ .+.+.. .|..-++|||..+ ++..++||+|.- +.+
T Consensus 142 sG~~~e~~ve~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Dfvi~~-~~~~i~IE~~~~~t~G 217 (281)
T R7FBS6_9CLOT/4 142 GGHLMEDIVERFIQKAGFKKNETYFKEMYLQDIENKWKLDMSFISNKNQATKRFDFVVKT-DNCIYGIETNFYASGG 217 (281)
T ss_pred hhcHHHHHHHHHHHHhcccCCceeeeeccHHHHHHHhCCCcccccCccCCcceEEEEEec-CCeEEEEEEEeecCCC
No 65
>PF05367.15 ; Phage_endo_I ; Phage endonuclease I
Probab=87.38 E-value=5.7 Score=25.82 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEee----CCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKV----NGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~----~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
|......|...|....-+..++.. ...+..+||+. ++| .++|+|.
T Consensus 12 E~~~a~~L~~~~i~~~yep~~i~~~~~~~~~~Y~PDF~l--~~g--~~iEvKg 60 (141)
T Q88KM2_PSEPK/1 12 EERAADQLTAVGMGFTFESLVVPYTRPAKVHKYTPDFAL--ANG--IIVETKG 60 (141)
T ss_pred HHHHHHHHHHCCCCeEEcccEEecccCCceeEEcCcEEE--eCC--eEEEeeC
No 66
>PF08722.15 ; Tn7_TnsA-like_N ; TnsA-like endonuclease N terminal
Probab=87.22 E-value=1.6 Score=23.43 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred EEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 35 RIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 35 r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+..+|+++...+|.. ++|+|..
T Consensus 24 ~~~pD~~v~~~~g~~-~~~vk~~ 45 (76)
T A6T2H6_JANMA/6 24 KHFPDLFVVGNGRAA-FIEVKSH 45 (76)
T ss_pred EEcccEEEEEcCCcE-EEEEccC
No 67
>7LW7_A Exonuclease V; HYDROLASE; HET: EDO; 2.5A {Homo sapiens}
Probab=87.17 E-value=14 Score=26.48 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHHCCCeEEEEEEEEeeCC--EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 10 KAKADLKKNGFTVVAEEVTMKVNG--KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 10 ~a~~~l~~~G~~iv~~eVti~~~G--~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.....+...+. .....+.....| .+-++|.|-.+++|.+.+++.|++
T Consensus 125 ~~~~~~~~~~~-~~E~~~~~~~~~~~~~G~iD~i~~~~~g~~~ivD~KT~ 173 (346)
T 7LW7_A 125 LLIPTLQSEGH-IREFPVFGEVEGVLLVGVIDELHYTAKGELELAELKTR 173 (346)
T ss_dssp HHHHHHHHHSE-EEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred hhHHHHHhcCC-eEEEEeEEEeCCEEEEEEeeEEEEcCCCEEEEEEeecC
No 68
>4F0Q_B Restriction endonuclease; CYTOSINE METHYLATION-DEPENDENT ENDONUCLEASE, HYDROLASE; 2.046A {Mycobacterium sp.}
Probab=86.56 E-value=8.3 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CcchhHHHHHHH----HHHHHCCCeEEEEEEEEee-CCEEEEEEEEEECCCCC--------EEEEEEEc
Q FD01543185_039 1 AYSGRRGVIKAK----ADLKKNGFTVVAEEVTMKV-NGKRIRADIVAKDANGN--------YHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~~a~----~~l~~~G~~iv~~eVti~~-~G~r~r~Diva~d~~G~--------i~~~EvK~ 56 (68)
...+..+|..+. ..|...|+.+..-.+|-.. ++. +|+++.. ++. .+++|||.
T Consensus 294 ~~~~~~FE~lva~l~~~l~~~~G~~~~~~~~t~~~~D~G---iD~i~~~-~~~~~~~~~~~~~lveaK~ 358 (456)
T 4F0Q_B 294 DGRKHAFELLASRVAAEVFRESGARYKEGWLSRSSGDGG---VDFIGRI-DMGSLKASTPVVVLGQAKC 358 (456)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSSCCEEEEEEESCSSSCCS---CCEEEEE-EESCSSSCEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCcEEEEEEeccCCCCc---eeEEEEE-eCCCCCCCccEEEEEEEEE
No 69
>4R5Q_A CRISPR-associated exonuclease, Cas4 family; MCSG, STRUCTURAL GENOMICS, PSI-BIOLOGY, EXONUCLEASE, HYDROLASE, Midwest Center for Structural Genomics; 2.65A {Pyrobaculum calidifontis JCM 11548}
Probab=86.40 E-value=11 Score=24.39 Aligned_cols=52 Identities=25% Similarity=0.200 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred hhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEE--EEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRI--RADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~--r~Diva~d~~G~i~~~EvK~g 57 (68)
|....+.....+..... ....++.+...+..+ ++|+|..+ +|.+.++|+|++
T Consensus 90 G~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~D~i~~~-~~~~~ivd~Kt~ 143 (216)
T 4R5Q_A 90 IIRGRILHERYERLLSQ-YENVVAEYKVEIGDLVGVVDLVIKR-GGEYIPVEIKTG 143 (216)
T ss_dssp HHHHHHHHHHHHHHHTT-STTEEEEEEEEETTEEEEEEEEEEE-TTEEEEEEECCS
T ss_pred HHHHHHHHHHHHHHhcc-ceeEEEEEEecCCeEEEEEEEEEEE-CCEEEEEEEeCC
No 70
>1WTE_A EcoO109IR; Restriction endonuclease, DNA complex, hydrolase-DNA COMPLEX; 1.9A {Escherichia coli} SCOP: c.52.1.29
Probab=85.38 E-value=1.9 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred EEEEEECCCCCEEEEEEEcCCCCCCcCc
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNGKGRLTKGQ 65 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g~a~lT~NQ 65 (68)
+|+...+++|..+++|+|+|...++..|
T Consensus 109 iDl~~~~~~g~~~~~eiKSg~~t~N~~~ 136 (272)
T 1WTE_A 109 IDHVIQRDDGRIELLSLKAGKWTIQLTM 136 (272)
T ss_dssp CCEEEECTTSCEEEEEEESSTTSCCHHH
T ss_pred ccEEEEcCCCeEEEEEEeccCCCCCHHH
No 71
>PF19778.3 ; RE_endonuc ; Endonuclease domain
Probab=84.83 E-value=8.7 Score=21.96 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHCCCeEEEEE----EEEeeCCEEEEEEEEEECCCC---CEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEE----VTMKVNGKRIRADIVAKDANG---NYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~e----Vti~~~G~r~r~Diva~d~~G---~i~~~EvK~g 57 (68)
|......|+..+..+.=.. ..+........+||++. .+| ...++|+|..
T Consensus 15 E~~~~~~l~~~~~v~~~~~~p~~~~~~~~~~~~~PDf~v~-~~g~~~~~~~~evK~~ 70 (104)
T A0A1G6YDE1_9SP 15 ERQFARDLDNNENVRLFVKIPSWFKIDTPIGPYNPDWAFV-TDRDEKLYFVRETKST 70 (104)
T ss_pred HHHHHHHhhcCCCeEEEEecCCceeeecCCeeccCCEEEE-eCCCCeEEEEEEecCC
No 72
>PF13020.10 ; NOV_C ; Protein NO VEIN, C-terminal
Probab=84.67 E-value=4.3 Score=23.45 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCC----EEEEEEEc
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGN----YHVFEVKN 56 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~----i~~~EvK~ 56 (68)
....+.+.+.+.+.|+. ..-+...... ...-.||...+ +|. ..+||||+
T Consensus 3 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~gyDi~~~~-~~~~~~~~~~ieVK~ 55 (96)
T A1B8R4_PARDP/1 3 ILSLEHERKRLKEVGID-LEPEWPGFDD-NFAGYDVLSYD-HGNAGIVNRLIEVKF 55 (96)
T ss_pred HHHHHHHHHHHHHcCCC-CCceecCCCC-CCCCccEEEEE-CCcccceeeEEEEEE
No 73
>5ZYU_A Mitochondrial genome maintenance exonuclease 1; huamnMGME1, DNA complex, DNA exonuclease, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; 1.752A {Homo sapiens}
Probab=83.71 E-value=18 Score=24.69 Aligned_cols=51 Identities=22% Similarity=0.044 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEee--CCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKV--NGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~--~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
..........+.. ...++..|..+.. -..+-++|+|... +|.+.+++.|++
T Consensus 113 ~~~~~~~~~~~~~-~~~~~~~E~~~~~~~~~~~G~iD~v~~~-~~~~~iiD~Kt~ 165 (254)
T 5ZYU_A 113 SGYIESVQHILKD-VSGVRALESAVQHETLNYIGLLDCVAEY-QGKLCVIDWKTS 165 (254)
T ss_dssp SHHHHHTHHHHTT-EEEEEEEEEEEEETTTTEEEEEEEEEEE-TTEEEEEEEEEC
T ss_pred HHHHHHHHHHHcc-CcceEEEEeeeecCCceeeeEeeEEEEE-CCEEEEEEecCC
No 74
>PF08907.15 ; DUF1853 ; Domain of unknown function (DUF1853)
Probab=82.86 E-value=16 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred hhHHHHHHHHHHH-HCCCeEEEEEEEEeeCC-EEEEEEEEEECCCCC--EEEEEE
Q FD01543185_039 4 GRRGVIKAKADLK-KNGFTVVAEEVTMKVNG-KRIRADIVAKDANGN--YHVFEV 54 (68)
Q Consensus 4 G~~Ge~~a~~~l~-~~G~~iv~~eVti~~~G-~r~r~Diva~d~~G~--i~~~Ev 54 (68)
|..+|....-.|+ .-.|+++..++-|.-+| +--++|||.+| .+. +.=.|+
T Consensus 61 G~yfE~L~~f~l~~~p~~~lla~nlqi~~~~~TlGElDfl~~~-~~~~~~~HlEl 114 (287)
T E1VBX9_HALED/1 61 GHYHERLWQHLLETAPNTRLLAHNLPVVRERRTLGELDLLYRN-NGERTPIHLEV 114 (287)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeCcceeeCCEEeceeeEEEEe-CCCCceEEEEE
No 75
>PF09903.13 ; DUF2130 ; Uncharacterized protein conserved in bacteria (DUF2130)
Probab=81.51 E-value=12 Score=27.25 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred chhHHHHHHHHHHHHC----CCeEEEEEEEEeeCCEEEEEEEEEECCCCC-----EEEEEEEcC-CCCCCcC
Q FD01543185_039 3 SGRRGVIKAKADLKKN----GFTVVAEEVTMKVNGKRIRADIVAKDANGN-----YHVFEVKNG-KGRLTKG 64 (68)
Q Consensus 3 ~G~~Ge~~a~~~l~~~----G~~iv~~eVti~~~G~r~r~Diva~d~~G~-----i~~~EvK~g-~a~lT~N 64 (68)
+|..+|....+.|+.. -....-..++....|. ..|||..-.+.. -.++|+|+. +...|.+
T Consensus 34 kGe~~E~~~~~~L~~~~~~~f~~d~~~~~~~~~~g~--~gD~i~~v~~~~~~~~g~IviE~K~~~~~~~~k~ 103 (261)
T R6TM13_9FIRM/2 34 IGESLEQHCQYIFNKNRAMAFPKAYFEKDNDIRTGS--KGDFIFRENTEDNIELLSIMFEMKNESETTATKH 103 (261)
T ss_pred HHHHHHHHHHHHHHHhhhhhCCcCeEEEcccccCCC--CCcEEEEEcCCCCceEeEEEEEecCCCCCCCCCc
No 76
>PF06372.16 ; Gemin6 ; Gemin6 Sm-like domain
Probab=80.40 E-value=13 Score=22.00 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEEEEEEee-CCEEEEEEEEEECC-CCCEEEEEEEc
Q FD01543185_039 23 VAEEVTMKV-NGKRIRADIVAKDA-NGNYHVFEVKN 56 (68)
Q Consensus 23 v~~eVti~~-~G~r~r~Diva~d~-~G~i~~~EvK~ 56 (68)
+++.|.+.+ +| .+.==+.+.|| ++.+++.+.++
T Consensus 16 vg~~V~v~~~~g-~~~G~l~~~Dp~s~~lvL~~~~~ 50 (85)
T GEMI6_MOUSE/1- 16 VYKEVRVIACEK-EYKGWLLTTDPVSANIVLVNFLE 50 (85)
T ss_pred cCCEEEEEECCC-EEEEEEEEECCCCCeEEEEEecC
No 77
>PF04555.17 ; XhoI ; Restriction endonuclease XhoI
Probab=80.28 E-value=8.1 Score=27.62 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred hHHHHHHHHHHHHCCCeE----EEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEEcCCC-CCCcC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTV----VAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVKNGKG-RLTKG 64 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~i----v~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK~g~a-~lT~N 64 (68)
+...+.....|.+.|..- ..++.++.- -...-+.|++..+.++=+..||+|+ .+ .+..|
T Consensus 23 ~~l~~~i~~~l~~~G~~~~~i~~~~~~~lpG~~r~~K~wDvvv~~~~~lv~aie~Ks-~~~S~gnN 87 (190)
T G2MQR7_9EURY/2 23 DGFATVCEEILMEAGVPEKSIYFDHEATLPGFFRATKRWDLAVIHEGELLAAIEFKS-ITSSFGNN 87 (190)
T ss_pred HHHHHHHHHHHHHCCCCHHHeeccCcccccccccCCCeEEEEEEECCEEEEEEEEEe-cCCCcccc
No 78
>6PPU_A ATP-dependent DNA helicase (UvrD/REP); DNA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; 3.5A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
Probab=80.15 E-value=16 Score=28.76 Aligned_cols=39 Identities=31% Similarity=0.403 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCeEEEEEEEEee-C-C---------EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 19 GFTVVAEEVTMKV-N-G---------KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 19 G~~iv~~eVti~~-~-G---------~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
++.....|+.+.. . + .+-++|.|-.+++|.+.+++.|+|
T Consensus 568 ~~~~~~~E~~~~~~~~~~~~~~~~~~l~G~iD~v~~~~~~~~~iiDyKtg 617 (724)
T 6PPU_A 568 QLTEVATEIPVEGIVVEPGENTPGVRVRGRLDRLERDEAGRLVVVDLKTG 617 (724)
T ss_dssp -CEEEEEEECCBSCSCCCB-----CCBBCCEEEEEECSSSCEEEECCBCC
T ss_pred CeeEEeEEEEeEEEEeCCCCCCCcEEEEEEEeEEEECCCCCEEEEEccCC
No 79
>8IBX_C Reverse transcriptase-like protein; R2 complex, RNA BINDING PROTEIN/RNA/DNA, RNA BINDING PROTEIN-RNA-DNA complex;{Bombyx mori}
Probab=78.71 E-value=8.8 Score=32.22 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.....|...|+ .+..|..+.......|+|||+.+ ++.+++++|
T Consensus 966 ~~~i~~~l~~~~~-~v~~e~~~~~~~~~~rpDiv~~~-~~~~~v~Dv 1010 (1114)
T 8IBX_C 966 VSFVAKAMEENKW-TVELEPRLRTSVGLRKPAIIASR-DGVGVIVDV 1010 (1114)
T ss_dssp HHHHHHHHHHTTC-CCEESCCEECSSCEECCSEECCB-TTBEEEEEE
T ss_pred HHHHHHHHHhCCC-EEEEcCcccCCCCCccccEEEec-CCeEEEEEE
No 80
>PF14511.10 ; RE_EcoO109I ; Type II restriction endonuclease EcoO109I
Probab=78.50 E-value=4.8 Score=27.60 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEEEEECCCCCEEEEEEEcCCCCCCcCc
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNGKGRLTKGQ 65 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g~a~lT~NQ 65 (68)
+|+.... +|..+++|+|++...++..|
T Consensus 93 iDl~~~~-~~~~~~~eiKs~~nt~N~~~ 119 (196)
T K8GKS6_9CYAN/7 93 IDLEFER-EHVRYIVSIKSGPNWGNSSQ 119 (196)
T ss_pred eeEEEEe-CCEEEEEEEEccCCCCCHHH
No 81
>PF13588.10 ; HSDR_N_2 ; Type I restriction enzyme R protein N terminus (HSDR_N)
Probab=78.40 E-value=16 Score=20.77 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred HHHHHHHHHHCCCe--EEEEEEEEe-eC-CEEEEEEEEEECC------CCCEEEEEEEc
Q FD01543185_039 8 VIKAKADLKKNGFT--VVAEEVTMK-VN-GKRIRADIVAKDA------NGNYHVFEVKN 56 (68)
Q Consensus 8 e~~a~~~l~~~G~~--iv~~eVti~-~~-G~r~r~Diva~d~------~G~i~~~EvK~ 56 (68)
.......|+..||. .+..+..+. .+ ....++|++..+. ...+.++|+|.
T Consensus 7 ~~~i~~ll~~~g~~~~~i~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ve~k~ 65 (117)
T C9RKX1_FIBSS/1 7 QVTVRYLLDVVKVPEHLIAVEFPLSSIDVKTADRVDIMVHNFRAGAPLDKPWLLVECKA 65 (117)
T ss_pred HHHHHHHHHHhCCCHHHeeccccccccCCCCCCeeeEEEEeCCCCCCCCCcEEEEEEeC
No 82
>PF12684.11 ; DUF3799 ; PDDEXK-like domain of unknown function (DUF3799)
Probab=78.00 E-value=23 Score=22.38 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred EEEEEEEeeCC--EEEEEEEEEECCCCCEEEEEEEcC-CCC
Q FD01543185_039 23 VAEEVTMKVNG--KRIRADIVAKDANGNYHVFEVKNG-KGR 60 (68)
Q Consensus 23 v~~eVti~~~G--~r~r~Diva~d~~G~i~~~EvK~g-~a~ 60 (68)
....+.+...| .+-++|+|..+ +| .+++.|++ ...
T Consensus 96 ~e~~~~~~~~~~~~~G~~D~i~~~-~~--~i~D~Kt~~~~~ 133 (235)
T F2JK71_CELLD/2 96 KERIFTGKISGIPFKIQIDILNIE-KG--YFADIKTTKNLS 133 (235)
T ss_pred ceEEEEEEecCeeEEEEEEEEEee-CC--EEEEEEecCCCC
No 83
>7MID_B CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion; CRISPR/Cas, Cas4, PAM recognition, HYDROLASE-DNA complex; 3.56A {Geobacter sulfurreducens}
Probab=77.92 E-value=17 Score=27.90 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCeEEEEEEEEeeC--CEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 19 GFTVVAEEVTMKVN--GKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 19 G~~iv~~eVti~~~--G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+......++.+... +.+.++|+|..+ +|.+.++|+|++
T Consensus 65 ~~~~~~~~~~~~~~~~~l~G~iD~l~~~-~~~~~ivD~Kt~ 104 (559)
T 7MID_B 65 DSRIHARSVSLSSERLGITAKIDLVEGE-GAYVSPVDYKRG 104 (559)
T ss_dssp -----------------------------------------
T ss_pred cCceeeEEEEEecCCceeEEEEEEEEcc-CCEEEEeEeecC
No 84
>PF17550.6 ; PsaF ; Family of unknown function
Probab=77.49 E-value=20 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred CeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEE
Q FD01543185_039 20 FTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFE 53 (68)
Q Consensus 20 ~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~E 53 (68)
|.-..|.+.++++|.|+.+..++.|.++++++-|
T Consensus 34 Y~~~~Ehldi~i~~~rfkm~hy~~d~~~~lv~Se 67 (162)
T PSAF_YERPE/1-1 34 YGDIHEHLDLRMQGIRFSLSHYIIDDKSQLVISE 67 (162)
T ss_pred eCCeEEEEEEEEeCeEEEEEEEEEcCCCCEEEee
No 85
>PF10356.13 ; RRG7 ; Required for respiratory growth protein 7
Probab=76.64 E-value=14 Score=26.24 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CcchhHHHHHHHHHHHHC--CCeEEEEEEEEeeCCEEEEEEEEEECCC--------------------------------
Q FD01543185_039 1 AYSGRRGVIKAKADLKKN--GFTVVAEEVTMKVNGKRIRADIVAKDAN-------------------------------- 46 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~--G~~iv~~eVti~~~G~r~r~Diva~d~~-------------------------------- 46 (68)
...|..+|..+...|.+. |+ .+...-......+|+++.. .
T Consensus 3 ~~~g~~fE~lv~~ll~~~~~~~-----~~~~~g~~~d~giDi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
T RRG7_KLULA/29- 3 VFQGTLYELTVVRELMNKLRLE-----DMQVVGGSYDGGIDIRGKW-NVLPLTKAIEMQIQFDELPKRLKLPTTSIKPWK 76 (185)
T ss_pred ccchHHHHHHHHHHHHhhcCcc-----eeEEeCCCCcCCeeEEEEE-ecchhhhHHHHHhccccCccccCCCCCcccCcc
Q ss_pred -----C--CEEEEEEEcC-CCCCCcCc
Q FD01543185_039 47 -----G--NYHVFEVKNG-KGRLTKGQ 65 (68)
Q Consensus 47 -----G--~i~~~EvK~g-~a~lT~NQ 65 (68)
+ ...++|||.. ..++++++
T Consensus 77 ~~~~~~~~~~~~vqcK~~~~~~v~~~~ 103 (185)
T RRG7_KLULA/29- 77 HRVKPDKYLDCYIQCKAFNSDKVTGRQ 103 (185)
T ss_pred ccCCCcceEEEEEEccccCCCCCCHHH
No 86
>PF02237.21 ; BPL_C ; Biotin protein ligase C terminal domain
Probab=75.50 E-value=13 Score=18.06 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred EEEEEEEeeCCEEE-EEEEEEECCCCCEEE
Q FD01543185_039 23 VAEEVTMKVNGKRI-RADIVAKDANGNYHV 51 (68)
Q Consensus 23 v~~eVti~~~G~r~-r~Diva~d~~G~i~~ 51 (68)
.++.+++..++... ..-++..|++|.+.+
T Consensus 2 ~g~~v~~~~~~~~~~~g~~~~i~~~G~l~v 31 (48)
T BICOA_NEIMB/27 2 HGKAVLLLRDGETVFEGTVKGVDGQGVLHL 31 (48)
T ss_pred CCCeEEEEeCCeEEEEEEEEccCCCCcEEE
No 87
>5C2N_D Beta propeller; bladed beta propeller, unknown function; HET: NAG; 1.65A {Enterobacteria phage L1}
Probab=74.30 E-value=7.7 Score=22.12 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=0.0 Template_Neff=5.600
Q ss_pred EEEEEECCCCCEEEEE
Q FD01543185_039 38 ADIVAKDANGNYHVFE 53 (68)
Q Consensus 38 ~Diva~d~~G~i~~~E 53 (68)
+++|..||+|.|++|.
T Consensus 4 f~flfF~P~G~Ly~V~ 19 (48)
T 5C2N_D 4 FKFLFFSPDGTLYGVH 19 (48)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred CcEEEECCCCCEEEEE
No 88
>PF19096.4 ; DUF5784 ; Family of unknown function (DUF5784)
Probab=73.84 E-value=36 Score=27.08 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=0.0 Template_Neff=2.500
Q ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcCCCCCCcCccCC
Q FD01543185_039 7 GVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNGKGRLTKGQKGS 68 (68)
Q Consensus 7 Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g~a~lT~NQ~~a 68 (68)
||-.+.+.|-..|| -+.-||.+. .| .-+||-+.+++|.-++||| +-|..|+.+.|
T Consensus 195 ~EF~aAklL~dAGy-~~~PEiev~-tG--HslDfra~~~~~~~~LVEV---TRP~pp~rR~a 249 (327)
T A0A1H3Z0H0_9EU 195 GEFHTAKLLVDMGY-DVEPEIEVS-TG--HSIDFQAQTETGEQPLVEV---TRPLPPNRRSA 249 (327)
T ss_pred hHHHHHHHHHHCCC-CcccEeeec-CC--ceeEEEecCCCCccceEEE---ecCCCCCccCC
No 89
>PF13535.10 ; ATP-grasp_4 ; ATP-grasp domain
Probab=73.69 E-value=25 Score=20.59 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEc-C-CCCCCc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKN-G-KGRLTK 63 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~-g-~a~lT~ 63 (68)
.+.+.+.++.-|+ ...-..+|++..+ +|+++++|+-. . .+.+.+
T Consensus 114 ~~~~~~~~~~~g~-----------~~g~~~~d~~~~~-~g~~~~~E~n~~r~~g~~~~ 159 (160)
T F0JGT9_9DELT/1 114 TDYLRDVARECGF-----------RDFVSHIEVRVTE-TGDIIPIEANPLRLAGWCVA 159 (160)
T ss_pred HHHHHHHHHHcCC-----------CCceEeEEEEECC-CCCEEEEEecCCcccccccC
No 90
>PF01930.21 ; Cas_Cas4 ; Domain of unknown function DUF83
Probab=73.32 E-value=11 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred EEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 35 RIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 35 r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+.++|+|. + +|.+.++|.|++
T Consensus 55 ~g~~D~v~-~-~~~~~v~d~k~~ 75 (162)
T O66693_AQUAE/1 55 PVKIDFLT-G-EEGLVVHEVKHS 75 (162)
T ss_pred ceEecEEe-c-CCcEEEEEeecC
No 91
>6EKO_A Restriction endonuclease PfoI; Restriction endonuclease, PD-(D/E)xK nuclease, Hydrolase; HET: MSE, CME; 2.284A {Pseudomonas fluorescens}
Probab=72.93 E-value=21 Score=27.95 Aligned_cols=62 Identities=21% Similarity=0.117 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred CcchhHHHH----HHHHHHHHCCCeEE--------------EEEEEEeeCC----EEEEEEEEEECC--CCCEEEEEEEc
Q FD01543185_039 1 AYSGRRGVI----KAKADLKKNGFTVV--------------AEEVTMKVNG----KRIRADIVAKDA--NGNYHVFEVKN 56 (68)
Q Consensus 1 ~~~G~~Ge~----~a~~~l~~~G~~iv--------------~~eVti~~~G----~r~r~Diva~d~--~G~i~~~EvK~ 56 (68)
..+|..++. ....+|+..+..++ .+.++|.+.+ .-.-+|||..+| +-.+.++-||+
T Consensus 109 s~aG~~fe~lI~y~l~~~l~~~~~~~I~~~~~~~lk~~~~l~r~l~I~~g~~~~~~P~DvDIVIy~~~~~~~iaIIS~KT 188 (312)
T 6EKO_A 109 KNVGENFVNLMVYALACILKDNDDVLVDKGLPPHLKKALTLSRECRIKDTLREIKIPIEGDLCVFSRSNHCNAIVISAAT 188 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSSEEEEESCCHHHHHHTEEEEEECSSSCCEEEEEECCCSEEEEESSCTTSEEEEEEES
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCchhcCCCCCccccccccceeEeeeecCCccceecCCeeEEEEeCCCCceEEEEEecc
Q ss_pred C-CCCCC
Q FD01543185_039 57 G-KGRLT 62 (68)
Q Consensus 57 g-~a~lT 62 (68)
+ ..|++
T Consensus 189 SLRER~~ 195 (312)
T 6EKO_A 189 RLKEVFH 195 (312)
T ss_dssp CCGGGHH
T ss_pred chHHHHh
No 92
>3H1T_A Type I site-specific restriction-modification system, R (Restriction) subunit; hydrolase, restriction enzyme hsdR, ATP-binding, Nucleotide-binding; HET: MSE; 2.3A {Vibrio vulnificus}
Probab=72.37 E-value=12 Score=28.12 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHCCCe----EEEEEEEEeeCC-----------EEEEEEEEE-ECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKNGFT----VVAEEVTMKVNG-----------KRIRADIVA-KDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~G~~----iv~~eVti~~~G-----------~r~r~Diva-~d~~G~i~~~EvK~g 57 (68)
.......|...||. .+.+++++.-++ ...++|+|. .....-+.+||+|..
T Consensus 31 ~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~p~~viE~K~~ 96 (590)
T 3H1T_A 31 RVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPE 96 (590)
T ss_dssp CCCCHHHHHHTTTTSTTCEEEEEEECCCCCEEEETTEEEECCCCEEEEEEEEETTEEEEEEEECCT
T ss_pred HHhchHHHHHCCCCCCccceeeeEEccCCceeecCCeeccCCccchhhheeecCCCcEEEEecCCC
No 93
>6QW0_A RNA-dependent RNA polymerase; Cap snatching endonuclease, Toscana virus, L protein, HYDROLASE; HET: SO4, GOL, MSE; 1.5A {Toscana virus}
Probab=71.56 E-value=9.7 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred EEEEEECCCCCEEEEEEEcC-CC
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNG-KG 59 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g-~a 59 (68)
+|++-++++|.++++|+++. +.
T Consensus 113 PD~i~~~~~~~~~VvEf~T~r~~ 135 (212)
T 6QW0_A 113 PDMIIETETGHVYVVEFTTTMGD 135 (212)
T ss_dssp CSEEEECTTSCEEEEEEEECSSC
T ss_pred CcEEEEeCCCeEEEEEEECccCC
No 94
>PF12784.11 ; PDDEXK_2 ; PD-(D/E)XK nuclease family transposase
Probab=71.34 E-value=17 Score=24.37 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCEEEEEEEEEECCCCCEEEEEEEc
Q FD01543185_039 32 NGKRIRADIVAKDANGNYHVFEVKN 56 (68)
Q Consensus 32 ~G~r~r~Diva~d~~G~i~~~EvK~ 56 (68)
++..+++|+++.+.+|..+.||+.+
T Consensus 50 ~~k~~~~Di~~~~~~~~~~~iE~q~ 74 (231)
T B4SC52_PELPB/6 50 AGKISILDIKAKAENGRWFNVEMQI 74 (231)
T ss_pred CCCeeeeeEEEEeCCCCEEEEEEEe
No 95
>4OC8_C restriction endonuclease AspBHI; DNA Cleavage, DNA Restriction Enzymes, DNA-Binding Proteins, Tetramerization, Models, Molecular, Azoarcus, Protein Multimerization, Protein Structure, Tertiary; HET: PO4; 2.884A {Azoarcus sp.}
Probab=69.64 E-value=31 Score=26.20 Aligned_cols=52 Identities=17% Similarity=-0.050 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEee-CCEEEEEEEEEECCCCCE-------EEEEEE
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKV-NGKRIRADIVAKDANGNY-------HVFEVK 55 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~-~G~r~r~Diva~d~~G~i-------~~~EvK 55 (68)
...+..+|..+...|+..|.....-++|-.. +|. +|+++....|.. +++|||
T Consensus 246 ~~~~~~FE~l~~~ll~~~g~~~~~~~~t~~~~d~G---iD~~~~~~~g~~~~~~~~~~~ve~K 305 (388)
T 4OC8_C 246 KENPFGFEACAGALTRLLLPDVARLDLTRPWRDGG---RDGIGRLRIGQSPAAIEVDFALEAK 305 (388)
T ss_dssp ---------------------------------------------------------------
T ss_pred hhCchhHHHHHHHHHHHHCCCceEEEecCCCCCCe---eEEEEEEecCCCCcceEEEEEEEEE
No 96
>7BBL_A Gem-associated protein 6; UsnRNP, Biogenesis, SMN-complex, Gemin8, SPLICING; 1.521A {Homo sapiens}
Probab=69.59 E-value=34 Score=20.50 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred EEEEEEEee-CCEEEEEEEEEECC-CCCEEEEEEEcC
Q FD01543185_039 23 VAEEVTMKV-NGKRIRADIVAKDA-NGNYHVFEVKNG 57 (68)
Q Consensus 23 v~~eVti~~-~G~r~r~Diva~d~-~G~i~~~EvK~g 57 (68)
+++.|.|.+ +|....==+.+.|| ++.+++..+...
T Consensus 16 vg~~V~V~~~~g~~~~G~v~~~Dp~~~~ivL~~~~~~ 52 (92)
T 7BBL_A 16 IYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLED 52 (92)
T ss_dssp TTCEEEEEEGGGEEEEEEEEEECTTTCCEEEEEECTT
T ss_pred cCCeEEEEECCCCEEEEEEEEECCCCCeEEEEEecCC
No 97
>PF01071.23 ; GARS_A ; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
Probab=69.47 E-value=24 Score=21.48 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
..+||+..+ +| ++++|+-.. +++-+
T Consensus 174 ~~~d~~~~~-~~-~~~~Ein~r~~~~~~ 199 (199)
T PUR2_METTH/100 174 LYGQFMLSA-DG-PKLIEYNARFGDPEA 199 (199)
T ss_pred EEEEEEEeC-Cc-cEEEEeecCCCCCCC
No 98
>PF06054.15 ; CoiA ; Competence protein CoiA-like family
Probab=69.35 E-value=62 Score=24.69 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
..|-....+.|+..|+.+.-+... .....|+|+++.. +|..+.||+-.+
T Consensus 72 ~~~K~~l~~~l~~~~~~~~~E~~~---~~~~~r~Dv~~~~-~~~~~aiE~q~s 120 (390)
T Q8ERT5_OCEIH/1 72 EMGKYELYQWLSNQNIEVDLEVYF---PQINRRADLVIKV-LNKIIIIEFQCT 120 (390)
T ss_pred HHHHHHHHHHHHhCCCeeEEEEEC---CCCCeEEEEEEEE-CCEEEEEEEEec
No 99
>PF21028.1 ; DUF1285_C ; Protein of unknown function (DUF1285), C-terminal domain
Probab=69.02 E-value=19 Score=21.93 Aligned_cols=41 Identities=15% Similarity=0.362 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EEEEEEee-CCEEEEEE----EEEECC-CC-CEEEEEEEcC-CCCCCcC
Q FD01543185_039 24 AEEVTMKV-NGKRIRAD----IVAKDA-NG-NYHVFEVKNG-KGRLTKG 64 (68)
Q Consensus 24 ~~eVti~~-~G~r~r~D----iva~d~-~G-~i~~~EvK~g-~a~lT~N 64 (68)
.+.+.+.+ .|..+.+| |...++ +| .+-.+.++.+ .|+||.+
T Consensus 15 ~~~i~l~~n~g~~~~l~~~~pL~~~~~~~g~~~pyv~vr~gl~Ar~sR~ 63 (91)
T K4KEY7_SIMAS/8 15 EQSVSFETATGDKLVLDKSHPLVVEHNAKGEPLPKVRVRYELDALIHRN 63 (91)
T ss_pred ceEEEEEeCCCCEEEeCCCCCEEEEeCCCCccccEEEeCCCCEEEechH
No 100
>PF02750.18 ; Synapsin_C ; Synapsin, ATP binding domain
Probab=68.54 E-value=30 Score=21.63 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCCCcCc
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRLTKGQ 65 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~lT~NQ 65 (68)
..+|++-.+ +|+++++|+... ...+...+
T Consensus 157 ~~vd~~~~~-~g~~~~~Evn~~~~~~~~~~~ 186 (203)
T SYN2_HUMAN/214 157 CAVKAVHGK-DGKDYIFEVMDCSMPLIGEHQ 186 (203)
T ss_pred EEEEEEECC-CCCEEEEEEeCCCCccCCcCc
No 101
>PF20796.1 ; PDDEXK_13 ; PD-(D/E)XK nuclease superfamily
Probab=68.44 E-value=8.7 Score=27.72 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CEEEEEEEEEE--CCCC--CEEEEEEE
Q FD01543185_039 33 GKRIRADIVAK--DANG--NYHVFEVK 55 (68)
Q Consensus 33 G~r~r~Diva~--d~~G--~i~~~EvK 55 (68)
|.++.+|++.. +++| .+++||+|
T Consensus 132 g~~T~~Dv~i~~~~~~g~~~~i~IE~K 158 (282)
T A0A521FG97_9BA 132 GDSSAFDVFVVYENEFGEDCFFGIEVK 158 (282)
T ss_pred CCCCCceEEEEEEcCCCCEEEEEEEEE
No 102
>PF15518.10 ; L_protein_N ; L protein N-terminus
Probab=68.43 E-value=9.4 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred EEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
+|++-.+ +|.+++||.|+. +....
T Consensus 73 PD~i~~~-~~~~~IIEf~Ts~s~~~~ 97 (103)
T H6V7I0_9VIRU/6 73 PDNYLII-NGWIIIIDYKVSVSNETT 97 (103)
T ss_pred CcEEEEE-CCEEEEEEeEeeeCCcch
No 103
>PF19246.3 ; DUF5894 ; Family of unknown function (DUF5894)
Probab=67.31 E-value=6.8 Score=23.64 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred EEEEEECC--CCCEEEEEEEcC
Q FD01543185_039 38 ADIVAKDA--NGNYHVFEVKNG 57 (68)
Q Consensus 38 ~Diva~d~--~G~i~~~EvK~g 57 (68)
.||+.... +|++.+||+|++
T Consensus 2 ~~iLn~~~p~~~kvliVnik~~ 23 (57)
T G5CSU0_9VIRU/2 2 NSILVKWQTSNSKSILIEINTD 23 (57)
T ss_pred cchhhhcCCCCCeEEEEEeCCC
No 104
>PF12705.11 ; PDDEXK_1 ; PD-(D/E)XK nuclease superfamily
Probab=66.55 E-value=29 Score=21.79 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEEEEEEEeeC-----------C-----EEEEEEEEEECCCCCEEEEEEEcC-CCCCCcC------c
Q FD01543185_039 21 TVVAEEVTMKVN-----------G-----KRIRADIVAKDANGNYHVFEVKNG-KGRLTKG------Q 65 (68)
Q Consensus 21 ~iv~~eVti~~~-----------G-----~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~N------Q 65 (68)
..+..|..+... | .+-++|+ +++|.+.+++.| + ..+.... |
T Consensus 102 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~G~iD~---~~~g~~~iiD~K-~~~~~~~~~~~~~~~Q 165 (242)
T Q7NDV3_GLOVI/4 102 RPFASEGRLRHSLVLDRVDVQFESRYDLLLWGEPDR---RGVAGIDLVEFK-TARQVRSLSQLEADLQ 165 (242)
T ss_pred CCeEEeeeeeecccCCcccccccCcceEEEEEeecc---cCCCcEEEEEcC-CCcccCchhHHHHhHH
No 105
>PF19782.3 ; DUF6267 ; Family of unknown function (DUF6267)
Probab=65.69 E-value=19 Score=28.42 Aligned_cols=46 Identities=28% Similarity=0.352 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred hhHHHHHHHHHHHHCCCeEE----EEEEEEeeCCEEEEEEEEEECC-CCCEEE
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTVV----AEEVTMKVNGKRIRADIVAKDA-NGNYHV 51 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~iv----~~eVti~~~G~r~r~Diva~d~-~G~i~~ 51 (68)
|.+|...|+..|++...... ...||++.+| -..=+.++|| +|+..+
T Consensus 15 G~~G~~~ai~~L~~l~~~l~~~~~~~~vtvKwDG--aPAiv~G~dP~~GkFFV 65 (392)
T A0A346FKI3_9CA 15 GKQGGFNAITFLRELGEMLSVSKSNVRVTTKWDG--APAIICGTDPVSKQFFV 65 (392)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcC--ceeEEEEEeCCCCcEEE
No 106
>PF18708.5 ; MapZ_C2 ; MapZ extracellular C-terminal domain 2
Probab=64.76 E-value=48 Score=21.84 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=0.0 Template_Neff=4.600
Q ss_pred HHHHHHHHHCCCeEEEEEEEEee---CCEEEEEEEEEECCCC--------------CEEEEEEEcC
Q FD01543185_039 9 IKAKADLKKNGFTVVAEEVTMKV---NGKRIRADIVAKDANG--------------NYHVFEVKNG 57 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~~eVti~~---~G~r~r~Diva~d~~G--------------~i~~~EvK~g 57 (68)
+..+..+.++|| |......++- -...--.++.+.+ +| -++.|.||+|
T Consensus 26 ekvi~~~i~rGY-i~~~~y~le~~~I~ng~GyY~ly~~~-~~~~~~~~~~~~~~~~ylvtIN~KTG 89 (94)
T R2PVY1_9ENTE/4 26 EKVIQTCLSRGY-ITEGGYYVEPARIENGEGYYNLYATS-NQAPLTKNLSPSDLPMYVVTINCKTG 89 (94)
T ss_pred HHHHHHHHHcCC-eecCCeEEEeceeecCCceEEEEEec-CCCCcccCCCccCCCeEEEEEEcCCC
No 107
>1T0F_A Transposon Tn7 transposition protein tnsA; protein-protein complex, mixed alpha-beta, DNA BINDING PROTEIN; HET: MPD, MLA; 1.85A {Escherichia coli} SCOP: a.4.5.27, c.52.1.16
Probab=64.69 E-value=20 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred EEEEEEEEEECCCCC--EEEEEEEc
Q FD01543185_039 34 KRIRADIVAKDANGN--YHVFEVKN 56 (68)
Q Consensus 34 ~r~r~Diva~d~~G~--i~~~EvK~ 56 (68)
.+..+||++...+|. .+++|+|.
T Consensus 112 ~~~tpD~~v~~~~g~~~~~~~evK~ 136 (276)
T 1T0F_A 112 QVMSTDFLVDCKDGPFEQFAIQVKP 136 (276)
T ss_dssp CCCEEEEEEEESSSSCSEEEEEECC
T ss_pred eeEEceEEEEEecCCeEEEEEEEee
No 108
>2IXS_A SDAI RESTRICTION ENDONUCLEASE; RESTRICTION ENDONUCLEASE, SDAI, HYDROLASE, ENDONUCLEASE, DOMAIN ARCHITECTURE; HET: TRS, SO4, EPE; 2.0A {STREPTOMYCES DIASTATICUS}
Probab=64.66 E-value=12 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred EEEEEECC-CCCEEEEEEEcCCCCCCc
Q FD01543185_039 38 ADIVAKDA-NGNYHVFEVKNGKGRLTK 63 (68)
Q Consensus 38 ~Diva~d~-~G~i~~~EvK~g~a~lT~ 63 (68)
+|+|..|+ .+-++|||+=++.++.++
T Consensus 232 PDvil~d~~~~~L~lIEaV~S~Gpi~~ 258 (323)
T 2IXS_A 232 PDLVLHDKVRKWLFLMEAVKSKGPFDE 258 (323)
T ss_dssp CSEEEEETTTTEEEEEEECCTTCCCCH
T ss_pred CCeEEEeCCCCEEEEEEeecCCCCCCH
No 109
>PF14398.10 ; ATPgrasp_YheCD ; YheC/D like ATP-grasp
Probab=64.40 E-value=33 Score=21.82 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCCCc
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRLTK 63 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~lT~ 63 (68)
..+||+..+ +|+++++|+-.. +. +..
T Consensus 206 ~~~D~~~~~-~g~~~~~EiN~~p~~-~~~ 232 (250)
T D5XE94_THEPJ/1 206 MEFDIGIDK-KGKIWVFEVNSKPFK-FDE 232 (250)
T ss_pred eEEEEEECC-CCCEEEEEEeCCCcc-CCc
No 110
>PF20212.2 ; DUF6572 ; Family of unknown function (DUF6572)
Probab=64.25 E-value=12 Score=23.62 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred EEEEEEECC-CCCEEEE
Q FD01543185_039 37 RADIVAKDA-NGNYHVF 52 (68)
Q Consensus 37 r~Diva~d~-~G~i~~~ 52 (68)
.||+|+.|+ +|.+.++
T Consensus 8 ~ID~i~~~~~~~~~~L~ 24 (107)
T A0A5C6RF35_9BA 8 KIDFIGTDDVSNTVVLT 24 (107)
T ss_pred cceEEEEeCCCCEEEEE
No 111
>3RMU_A Methylmalonyl-CoA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondria, ISOMERASE; HET: EDO, PG4; 1.8A {Homo sapiens} SCOP: l.1.1.1, d.32.1.0
Probab=63.73 E-value=39 Score=19.05 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|.+.|..+..........| ....-+..+||+|...-+
T Consensus 88 ~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~dp~G~~~~l 131 (134)
T 3RMU_A 88 INAAVMDLKKKKIRSLSEEVKIGAHG-KPVIFLHPKDCGGVLVEL 131 (134)
T ss_dssp HHHHHHHHHHTTCTTBCCCCEECTTS-SEEEEECSCSSCCSCEEE
T ss_pred HHHHHHHHHHCCceecccccccCCCC-CeEEEEcccccCceEEEE
No 112
>6QH4_C Methylmalonyl-CoA epimerase, mitochondrial; Methylmalonyl-CoA epimerase, mitochondrial, ISOMERASE; 1.922A {Homo sapiens} SCOP: d.32.1.0, l.1.1.1
Probab=63.03 E-value=35 Score=21.00 Aligned_cols=44 Identities=30% Similarity=0.313 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|..+....+.....|....+-.. +||+|++..+
T Consensus 109 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~-~dp~G~~iel 152 (155)
T 6QH4_C 109 INAAVMDLKKKKICSLSEEVKIGAHGKPVIFLHP-KDCGGVLVEL 152 (155)
T ss_dssp HHHHHHHHHHTTCCBCC--CEECTTSSEEEEECH-HHHTSCEEEE
T ss_pred HHHHHHHHHhCCCeecccccccCCCCceEEEECc-ccCCeEEEEE
No 113
>1I7N_A SYNAPSIN II; SYNAPSE, PHOSPHORYLATION, SYNAPSIN IIA C-DOMAIN, NEUROPEPTIDE; 1.9A {Rattus norvegicus} SCOP: c.30.1.5, d.142.1.3
Probab=62.29 E-value=39 Score=23.23 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCCCcCc
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRLTKGQ 65 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~lT~NQ 65 (68)
..+|++..+ +|+++++|+-.. ++.+...+
T Consensus 259 ~~id~~~~~-~g~~~~iEiN~r~~~~~~~~~ 288 (309)
T 1I7N_A 259 CAVKAVHGK-DGKDYIFEVMDCSMPLIGEHQ 288 (309)
T ss_dssp EEEEEEEET-TSCEEEEEEECTTCCCCSSCH
T ss_pred EEEEEEECC-CCCEEEEEEeCCCCccCCCCh
No 114
>6NTV_B RNA polymerase; SFTSV, RDRP, TRANSCRIPTION, Cap-snatching; HET: MSE; 2.4A {Severe fever with thrombocytopenia virus}
Probab=62.26 E-value=19 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred EEEEEECCCCCEEEEEEEcC-CC
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNG-KG 59 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g-~a 59 (68)
+|+|-++++|.++++|+++. +.
T Consensus 111 PD~i~~~~~~~~~VvEf~Ttr~~ 133 (226)
T 6NTV_B 111 PDVIHTRLDGTIVVVEFSTTRSH 133 (226)
T ss_dssp CSEEEECTTSCEEEEEEEECCCS
T ss_pred CcEEEEcCCCeEEEEEEeCCcCC
No 115
>8GY8_B Putative translation initiation factor (IF-2 homolog); nuclease RecJ2, DNA BINDING PROTEIN; 1.94A {Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)}
Probab=62.02 E-value=63 Score=25.27 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred HHHHHHHHHH-CCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKK-NGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~-~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
|+.-.+.|.+ .|+++..+.-.+.++|.-.-+||.-.. +|+-+++|+
T Consensus 265 E~~f~~~~~~~~~W~i~repe~l~~g~~v~iPDf~l~~-~g~~v~lEI 311 (375)
T 8GY8_B 265 EREFVTKIKRILGVEVIREPGIIKAGQYAYIPDFLIRK-NGKEVYVEI 311 (375)
T ss_dssp HHHHHHHHHHHHCCEEEESCCCEEETTEEECCSEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHhhhhCCceeecCceeecCCeEEEeeEEEEE-CCEEEEEEE
No 116
>PF14090.10 ; HTH_39 ; Helix-turn-helix domain
Probab=61.82 E-value=41 Score=18.62 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHHHCCCeEEEEEEEEee-CCEEEEE
Q FD01543185_039 9 IKAKADLKKNGFTVVAEEVTMKV-NGKRIRA 38 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~~eVti~~-~G~r~r~ 38 (68)
...+.+|++.|+.|..+.++... +|...++
T Consensus 30 ~~~I~~Lr~~G~~I~~~~~~~~~~~G~~~~~ 60 (68)
T A1VQM2_POLNA/2 30 RARVLQLRNAGESITTTWTRIATESGDLHRV 60 (68)
T ss_pred HHHHHHHHHCCCCcEEEEEEEECCCCCEEEE
No 117
>PF02222.26 ; ATP-grasp ; ATP-grasp domain
Probab=61.66 E-value=49 Score=19.50 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCCcCccCC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLTKGQKGS 68 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~NQ~~a 68 (68)
..-.+.+...++..|+ .| -..+|++..+ +|+++++|+-.. +......-..+
T Consensus 121 ~~~~~~~~~~~~~l~~-----------~g-~~~~d~~~~~-~g~~~~~Ein~r~~~~~~~~~~~~ 172 (172)
T Q84TI2_ARATH/1 121 KLATDVAQKAVGSLEG-----------AG-VFAVELFLTE-DSQILLNEVAPRPHNSGHQTIECC 172 (172)
T ss_pred HHHHHHHHHHHHhcCc-----------ce-eEEEEEEECC-CCeEEEEEecCCCcccccccccCC
No 118
>3HQG_A Type-2 restriction enzyme EcoRII; restriction endonuclease, EcoRII, nucleotide flipping, protein-DNA complex, DNA recognition, Endonuclease, Hydrolase, Magnesium, Nuclease, Restriction system, HYDROLASE-DNA; 2.6A {Escherichia coli}
Probab=61.26 E-value=23 Score=25.83 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CcchhHHHHHHHHHHHHCCCe-EEEEEEEEeeCCEEEEEEEEE-----ECCC----CCEEEEEEEcC-CCCC
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFT-VVAEEVTMKVNGKRIRADIVA-----KDAN----GNYHVFEVKNG-KGRL 61 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~-iv~~eVti~~~G~r~r~Diva-----~d~~----G~i~~~EvK~g-~a~l 61 (68)
...|..+|......|...|+. ...+..+ +| ..++|||- .++. +.+.++-||+. ..|+
T Consensus 82 sRaG~s~E~~l~~il~~~gi~~~~~q~~~---~~-~~~~Dfv~P~~~~y~~~~~p~~~~~~ls~KtTlRERw 149 (222)
T 3HQG_A 82 SRAGKSLELHLEHLFIEHGLRHFATQAIT---EG-NKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRW 149 (222)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCBSSCCS---SS-SCCCSEEESCHHHHHCTTSCGGGCEEEEEESCCGGGG
T ss_pred ccccHHHHHHHHHHHHHcCcccccccccc---CC-CcccCEEecChhhccCCCCchhceEEEEEecchHHhH
No 119
>PF10877.12 ; DUF2671 ; Protein of unknown function (DUF2671)
Probab=60.65 E-value=19 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=0.0 Template_Neff=3.500
Q ss_pred EEECCCCCEEEEEEEc
Q FD01543185_039 41 VAKDANGNYHVFEVKN 56 (68)
Q Consensus 41 va~d~~G~i~~~EvK~ 56 (68)
|+.-|||.|+++|+|.
T Consensus 47 v~QlpnGdIv~tE~K~ 62 (88)
T A0A0F3QXW4_RIC 47 ITQLPNGDINVTEVRI 62 (88)
T ss_pred EEECCCCCEEEEceeE
No 120
>PF15649.10 ; Tox-REase-7 ; Restriction endonuclease fold toxin 7
Probab=60.49 E-value=14 Score=22.36 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred hhHHHHHHHHHHHHCCCeEEEEEEEEee-----CCEEEEEEEEEECCCCCEEEEEEEcC-C--CCCCc
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTVVAEEVTMKV-----NGKRIRADIVAKDANGNYHVFEVKNG-K--GRLTK 63 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~iv~~eVti~~-----~G~r~r~Diva~d~~G~i~~~EvK~g-~--a~lT~ 63 (68)
|++||.. .|..-.....++.+ .+....+|.+..+ .+ .+.|+|+. . -+||.
T Consensus 1 g~~ge~~-------~gi~~~~~~~~~~~~~~~g~~~~~iPD~~~~~-~~--~i~evKnv~~~~~~~t~ 58 (88)
T D5UX20_TSUPD/3 1 GAEGERR-------AGIPPGVKKERIYPRNPLGRGGYRIPDFLDEP-NK--QLTEVKNVNAISRRDDK 58 (88)
T ss_pred ChHhHHH-------cCCCCCCCCceeecCCCCCCCceecCCcccCC-CC--eEEEEEcccccCCCccH
No 121
>PF18742.5 ; DpnII-MboI ; REase_DpnII-MboI
Probab=60.07 E-value=24 Score=23.72 Aligned_cols=45 Identities=22% Similarity=-0.077 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK 55 (68)
.+.....|+.....+..++......|.+.|+||...+ .=.+||+|
T Consensus 36 q~~l~~~L~~~f~~v~~E~~~~~~~~~~~r~Df~i~~---~~i~IE~K 80 (148)
T D8PCQ6_9BACT/4 36 QDLFYALLRLQFDEVGTEEWTPPYADGARRTSYLLDW---EKTVVVVK 80 (148)
T ss_pred HHHHHHHHHHhccccccCCCCCCCCCCcceeEEEeCc---cCEEEEEE
No 122
>PF06666.15 ; DUF1173 ; Protein of unknown function (DUF1173)
Probab=59.69 E-value=24 Score=26.16 Aligned_cols=45 Identities=7% Similarity=-0.107 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
|......|.+.+. ...+-+.....+..+++|||-.| .+..+++||
T Consensus 306 Er~~~~~L~~~~r-~f~KPL~~~~~~~~~~PDFvl~d-~~~~~~iEV 350 (377)
T A1SBZ9_NOCSJ/3 306 DKLLLDAALDSRR-RFTKSLRYNLAPDTPMASLVFTD-TETPTAAFL 350 (377)
T ss_pred HHHHHHHHHHcCC-CcccccccCCCCCCCcccEEEeC-CCCCEEEEE
No 123
>PF02655.18 ; ATP-grasp_3 ; ATP-grasp domain
Probab=59.59 E-value=39 Score=20.22 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEEE-------EECCCCCEEEEEEEcC-CCC
Q FD01543185_039 36 IRADIV-------AKDANGNYHVFEVKNG-KGR 60 (68)
Q Consensus 36 ~r~Div-------a~d~~G~i~~~EvK~g-~a~ 60 (68)
..+|++ ..+.+|.++++|+-.. .++
T Consensus 135 ~~~d~~~~~~~~~~~~~~~~~~~~Ein~r~~~~ 167 (167)
T Q97H24_CLOAB/1 135 NGENLIGPLTIQCIVDNLGEIYFIEINPRFGGG 167 (167)
T ss_pred CceeeeccceeEEEECCCCcEEEEEEecCCCCC
No 124
>PF06023.16 ; Csa1 ; CRISPR-associated exonuclease Csa1
Probab=58.33 E-value=69 Score=20.99 Aligned_cols=49 Identities=16% Similarity=-0.088 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred hHHHHHHHHHHHH----------CCCeEEEEEEEEee--CCEEE--EEEEEEECCCCC-EEEEEEEcC
Q FD01543185_039 5 RRGVIKAKADLKK----------NGFTVVAEEVTMKV--NGKRI--RADIVAKDANGN-YHVFEVKNG 57 (68)
Q Consensus 5 ~~Ge~~a~~~l~~----------~G~~iv~~eVti~~--~G~r~--r~Diva~d~~G~-i~~~EvK~g 57 (68)
..........+.. ........++.+.. .+... ++|+|.. . +.+++.|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~G~iD~i~~----~~~~iiD~Kt~ 190 (281)
T O28400_ARCFU/1 127 SLCQSSYLKVRSEQPYATEEGVLLTSMPFLVEHRMDGSLLGCSGLISVDCYDY----LRNVVFDLKVG 190 (281)
T ss_pred HHHHHHHHHHHhcCCcccccccccccCceeecccCCCceeccceeEEEEEecC----cceEEEEEecC
No 125
>7LO5_C Site-specific DNA-methyltransferase (adenine-specific); inhibitor, Complex, endonuclease, methyl transferase, TypeIIL RM system, HYDROLASE, HYDROLASE-DNA complex; HET: SAM; 2.86A {Deinococcus wulumuqiensis}
Probab=58.23 E-value=89 Score=26.89 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEee-CCEEEEEEEEEECCCCC-EEEEEEEcCCCCCCc
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKV-NGKRIRADIVAKDANGN-YHVFEVKNGKGRLTK 63 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~-~G~r~r~Diva~d~~G~-i~~~EvK~g~a~lT~ 63 (68)
...+..........|| .+-.|..++. .|.+.++|++..+..|. +.+||+|.-...|++
T Consensus 30 ~~l~~ll~~~~~~~g~-~i~~e~~~~~~~g~~~~pD~~l~~~~~~~~~~iEaK~~~~~L~~ 89 (1029)
T 7LO5_C 30 AAFQQLLSDWAEGSGL-RLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDD 89 (1029)
T ss_dssp HHHHHHHHHHHHHTTC-EEEESCCEECTTSCEECCSEEEECTTSCEEEEEEECCTTSCHHH
T ss_pred HHHHHHHHHHhHhcCC-EEEEEeecccCCCCeecCCEEEEcCCCCeEEEEEeCCccCCchH
No 126
>3ZI1_A GLYOXALASE DOMAIN-CONTAINING PROTEIN 4; ISOMERASE; HET: EDO; 1.9A {HOMO SAPIENS}
Probab=58.19 E-value=90 Score=22.08 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|..++.....+...|...-.-+...||+|++..+
T Consensus 233 l~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~~DP~G~~~~l 277 (330)
T 3ZI1_A 233 LPDLEDLMKRENQKILTPLVSLDTPGKATVQVVILADPDGHEICF 277 (330)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECCTTSCCEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHCCCceeccceecCCCCCceEEEEEEECCCCCEEEE
No 127
>1EHI_B D-ALANINE:D-LACTATE LIGASE; ATP-binding. Grasp motif for ATP., LIGASE; HET: PHY, ADP; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2, d.142.1.1
Probab=57.95 E-value=71 Score=23.03 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -.++||+..+ +|.++++|+
T Consensus 284 ~~~~~~~~~~l~~-----------~g-~~~iD~~~~~-~g~~~i~Ei 317 (377)
T 1EHI_B 284 KQMALDAYKVLNL-----------RG-EARMDFLLDE-NNVPYLGEP 317 (377)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHcCC-----------CC-EEEEEEEECC-CCCEEEEcc
No 128
>3S1S_A restriction endonuclease BpuSI; PD--(D/E)xk catalytic motif, gamma-N6m-adenosine methyltransferase, S-adenosyl-methionine binding, HYDROLASE, TRANSFERASE; HET: MSE, IOD, SAH, EDO; 2.35A {Bacillus pumilus}
Probab=57.71 E-value=45 Score=28.11 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECC-CCCE-EEEEEEcCCCCCCcC--ccCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDA-NGNY-HVFEVKNGKGRLTKG--QKGS 68 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~-~G~i-~~~EvK~g~a~lT~N--Q~~a 68 (68)
+..+-..++..|+ ...-++.....+.+-++|++-.+. +|+. .+||+|.-...++.. +.+|
T Consensus 30 ~~~lg~~~~~~~~-~~~~~v~~~~~~~~~~~D~vl~~~~~~~~~~vIEaK~~~~~~~~~~~~~Qa 93 (878)
T 3S1S_A 30 EAALNQALVNTGL-DSTYEVVHHELVGSIEADFVIKNKQTKKYLLIVEVKRTKSQVSSTRYRLQA 93 (878)
T ss_dssp HHHHHHHHHHHTG-GGTEEEEEEEEETTEEEEEEEEETTTCCEEEEEEECSSHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCcceEEeecccCcceeeEEEEECCCCcEEEEEEEecChhhhcChhHHHHH
No 129
>PF14397.10 ; ATPgrasp_ST ; Sugar-transfer associated ATP-grasp
Probab=57.38 E-value=35 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+||+..+ +|+++++|+
T Consensus 233 ~~~D~~~~~-~g~~~~~Ei 250 (274)
T Q21FC8_SACD2/3 233 LGVDLVIDA-NMGPVLLEL 250 (274)
T ss_pred EEEEEEEcC-CCCEEEEEE
No 130
>PF08011.15 ; PDDEXK_9 ; PD-(D/E)XK nuclease superfamily
Probab=56.85 E-value=27 Score=19.95 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred EEEEEEECCCCCEEEEEEE
Q FD01543185_039 37 RADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 37 r~Diva~d~~G~i~~~EvK 55 (68)
++||+... ++...++|+|
T Consensus 31 ~~di~i~~-~~~~~iiE~K 48 (97)
T Q2FN64_METHJ/4 31 RIDLTVKT-RTGIWIFEFK 48 (97)
T ss_pred cccEEEEc-CCEEEEEEEE
No 131
>PF05626.15 ; DUF790 ; Protein of unknown function (DUF790)
Probab=56.81 E-value=99 Score=24.36 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHH--CCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKK--NGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~--~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
|+.-.+.|.+ .|+++..+.-.+.+.|.-.-+||+.+..+|+-+++|+
T Consensus 290 E~~f~~~f~~~~~~W~l~re~~~l~~~~~v~iPDF~l~~~~g~~v~lEI 338 (402)
T U5QPI0_9CYAN/1 290 EQSFAEQWRTLKTEWQLEREVHLLPIPGSVMIPDFRLIHPDGRSVILEI 338 (402)
T ss_pred HHHHHHHHHccCCCceEEecCcccccCCeEEEceEEEEcCCCCEEEEEE
No 132
>6P66_B DNA endonuclease Bax1; Helicase, nuclease, complex, HYDROLASE; 3.0A {Archaeoglobus fulgidus DSM 4304}
Probab=56.43 E-value=80 Score=25.64 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
|+.-.+.|.+.|+++..+.-.+.++|.-.-+||.-.. +|.-+++|+
T Consensus 274 E~~f~~~f~~~gW~l~rEpepl~~g~~v~iPDF~l~~-~g~~vylEI 319 (468)
T 6P66_B 274 EEEFARKMQMLGYEVEREPDVVKAGKYAFIPDFAVNL-GDKKVYIEI 319 (468)
T ss_dssp CHCCCCCHHHHHTTSCBCSSCCCCCSSBCCCCEEEEC-SSCEEEEEC
T ss_pred HHHHHHHHHhcCCeEecCCceeecCCeEEEeeEEEEE-CCEEEEEEe
No 133
>3OXH_A RV0577 PROTEIN; KINASE REGULATION, ANTIBIOTIC RESISTANCE, MYCOBACTERIUM TUBERCULOSIS, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM; HET: XYL, PMB; 1.75A {Mycobacterium tuberculosis}
Probab=56.41 E-value=75 Score=21.74 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+++.+.|++.|.+++..-......|..+.+ +||+|.++.|
T Consensus 235 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~----~dP~G~~ie~ 275 (282)
T 3OXH_A 235 ADATAAKAAAAGGQVIAEPADIPSVGRFAVL----SDPQGAIFSV 275 (282)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETTTEEEEEE----ECTTSCEEEE
T ss_pred HHHHHHHHHHCCCEEeecCccCCCCceEEEE----ECCCCCeEEE
No 134
>6PPR_A ATP-dependent DNA helicase (UvrD/REP); DNA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; HET: ANP; 3.5A {Mycobacterium smegmatis}
Probab=56.13 E-value=56 Score=26.83 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred EEEEEEEEEECCCCCEEEEEEEcCCCCCCcC
Q FD01543185_039 34 KRIRADIVAKDANGNYHVFEVKNGKGRLTKG 64 (68)
Q Consensus 34 ~r~r~Diva~d~~G~i~~~EvK~g~a~lT~N 64 (68)
.+-+||.|-++++|.+++|+.|+|..+.++.
T Consensus 915 ~~G~iDrv~~~~~~~~~iiDyKtg~~~~~~~ 945 (1045)
T 6PPR_A 915 VRGRLDRLERDEAGRLVVVALKTGKSPVTKD 945 (1045)
T ss_dssp EEEEEEEEECCTTSCCCEECCBCCSSCCCTT
T ss_pred EEEEEEEEEECCCCCEEEEEecCCCCCCChh
No 135
>PF08727.15 ; P3A ; Poliovirus 3A protein like
Probab=55.25 E-value=32 Score=19.98 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=0.0 Template_Neff=5.500
Q ss_pred HHHHHHHHHCCCeEEEEEEEEe
Q FD01543185_039 9 IKAKADLKKNGFTVVAEEVTMK 30 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~~eVti~ 30 (68)
...++|++++|| |+..+++++
T Consensus 26 ~~Vi~yc~~~G~-Iip~~~~~e 46 (52)
T POLG_HRV8A/142 26 PEIIKYCQDNNW-IVPAECSIE 46 (52)
T ss_pred HHHHHHHHHCCC-eecccceEE
No 136
>7BBL_B Gem-associated protein 7; UsnRNP, Biogenesis, SMN-complex, Gemin8, SPLICING; 1.521A {Homo sapiens}
Probab=55.17 E-value=44 Score=20.87 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred HHHHHHCCCeEEEEEEEEee-CCEEEEEEEEEECCCCCEEEEE
Q FD01543185_039 12 KADLKKNGFTVVAEEVTMKV-NGKRIRADIVAKDANGNYHVFE 53 (68)
Q Consensus 12 ~~~l~~~G~~iv~~eVti~~-~G~r~r~Diva~d~~G~i~~~E 53 (68)
.++|..-.. ..+++++|.. +++.+...|.+.|++....+++
T Consensus 20 er~Lr~l~~-l~~~~~~i~l~~~~~v~g~~~a~d~~~~~~~V~ 61 (87)
T 7BBL_B 20 ERYLRSLLA-MVGHQVSFTLHEGVRVAAHFGATDLDVANFYVS 61 (87)
T ss_dssp HHHHHHHHT-TTTSEEEEEEGGGCEEEEEEEEECSSSCCEEEE
T ss_pred HHHHHHHHH-HhCCccEEEEeCCCEEEEEEEeecCCccEEEEe
No 137
>1D02_B TYPE II RESTRICTION ENZYME MUNI; ALPHA/BETA PROTEIN, PROTEIN-DNA COMPLEX, DISTORTED DOUBLE HELIX, HYDROLASE-DNA COMPLEX; 1.7A {Mycoplasma} SCOP: c.52.1.8
Probab=55.09 E-value=27 Score=26.04 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=0.0 Template_Neff=3.500
Q ss_pred EEEEEEEECC-CCCEEEEEEE
Q FD01543185_039 36 IRADIVAKDA-NGNYHVFEVK 55 (68)
Q Consensus 36 ~r~Diva~d~-~G~i~~~EvK 55 (68)
+.+|+.-.+. +|+..++|+|
T Consensus 80 i~PD~aI~N~~TgK~lyvEvK 100 (202)
T 1D02_B 80 VSPAFAIENTETHKILFGEIK 100 (202)
T ss_dssp CCCSEEEEETTTTEEEEEEEE
T ss_pred eccceEEEeCCCCCEEEEEEE
No 138
>2A4X_A Mitomycin-Binding Protein; alfa/beta protein, Mitomycin C-binding protein, Bleomycin A2, ANTIMICROBIAL PROTEIN, Structural Genomics; HET: BLM; 1.4A {Streptomyces caespitosus} SCOP: d.32.1.2, l.1.1.1
Probab=54.81 E-value=69 Score=19.03 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEE
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFE 53 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~E 53 (68)
....+.+.+.|.+.|.+++....... .|.+. +..+||+|.+.-++
T Consensus 82 ~~~~~~~~~~l~~~g~~~~~~~~~~~-~g~~~---~~~~dp~G~~~e~~ 126 (138)
T 2A4X_A 82 TASVDKKYAELVDAGYEGHLKPWNAV-WGQRY---AIVKDPDGNVVDLF 126 (138)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEET-TTEEE---EEEECTTCCEEEEE
T ss_pred HHHHHHHHHHHHHCCCccccCcccCC-CcceE---EEEECCCCCEEEEe
No 139
>6PPU_B UvrD/REP helicase; DNA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; 3.5A {Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)}
Probab=54.78 E-value=39 Score=27.76 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 35 RIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 35 r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+-+||-|-.+++|.+.+|+.|+|
T Consensus 996 ~G~IDRid~~~~g~~~IiDYKTg 1018 (1095)
T 6PPU_B 996 RGRIDAVFAEPDGTTMVLDWKTG 1018 (1095)
T ss_dssp -----------------------
T ss_pred EEEEeEEEECCCCCEEEEEcCCC
No 140
>7M4S_A AMdnB protein; Natural products, RiPPs, macrocyclase, BIOSYNTHETIC PROTEIN; 2.493A {Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)}
Probab=54.67 E-value=97 Score=22.08 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++..|+. . ..+||+..+ +|+++|+|+
T Consensus 300 ~~~~~~~~~~l~~~-~------------~~vd~~~~~-~g~~~~iEi 332 (360)
T 7M4S_A 300 IQHLDQFMARLGLT-F------------GAFDFIVTP-LEEYVFLEI 332 (360)
T ss_dssp HHHHHHHHHHHTCS-E------------EEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHcCCC-E------------EEEEEEECC-CCCEEEEEE
No 141
>6HZ4_N Protein McrC; AAA+ superfamily, restriction enzyme, DNA BINDING PROTEIN; HET: GDP, GNP; 3.6A {Escherichia coli (strain K12)}
Probab=54.55 E-value=81 Score=23.05 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred hHHHHHHHHHHHH--CCCeEEEEEEEEee-CC--------EEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 5 RRGVIKAKADLKK--NGFTVVAEEVTMKV-NG--------KRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 5 ~~Ge~~a~~~l~~--~G~~iv~~eVti~~-~G--------~r~r~Diva~d~~G~i~~~EvK 55 (68)
..+|......|.. .|+.+......... ++ .+.++||+-.+ ++.+.++++|
T Consensus 199 ~LfE~~v~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~PDi~l~~-~~~~~vlDaK 259 (348)
T 6HZ4_N 199 LLYQKFLYEFCRRELTSANTTRSYLKWDASSISDQSLNLLPRMETDITIRS-SEKILIVDAK 259 (348)
T ss_dssp HHHHHHHHHHHHHHCCSSEEECCEECCSCBCSSCSSCCSSCCEECSEEEEC-SSCEEEECCC
T ss_pred HHHHHHHHHHHHHHcccCEeecceecCCccCCChhhhhcCccccCcEEEEc-CCeEEEEEEe
No 142
>5KS8_A Pyruvate carboxylase subunit alpha; Biotin, Ligase, TIM Barrel, Pyruvate; HET: BTI, PYR; 3.01A {Methylobacillus flagellatus}
Probab=54.53 E-value=1.3e+02 Score=21.94 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
+.-.+.+.+.+++.|+ .| -..+||+... +|.++|+|+-.+ ...+.
T Consensus 185 ~~l~~~~~~~~~~lg~-----------~g-~~~~e~~~~~-~~~~~~iEin~R~~~~~~ 230 (405)
T 5KS8_A 185 EYIGNLAVKAAKAVGY-----------KN-AGTVEFLLDS-DNNFYFMEMNTRLQVEHT 230 (405)
T ss_dssp HHHHHHHHHHHHHTTC-----------CE-EEEEEEEECT-TSCEEEEEEECSCCTTHH
T ss_pred HHHHHHHHHHHHHcCC-----------Cc-eEEEEEEEcC-CCCEEEEEEEcCCCchhh
No 143
>3Q2O_B Phosphoribosylaminoimidazole carboxylase, ATPase subunit; carboxylase, carboxylates, ATP Binding, LYASE; 1.96A {Bacillus anthracis}
Probab=54.47 E-value=1.2e+02 Score=21.60 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.+.+.+.++.-|+ . .-..+|++..+ +|+++++|+-..
T Consensus 242 ~~~~~~~~~~l~~-----------~-G~~~id~~~~~-~g~~~~~Ein~r 278 (389)
T 3Q2O_B 242 IAYAKVLADELEL-----------V-GTLAVEMFATA-DGEIYINELAPR 278 (389)
T ss_dssp HHHHHHHHHHTTC-----------C-EEEEEEEEECT-TSCEEEEEEESS
T ss_pred HHHHHHHHHHcCC-----------c-EEEEEEEEECC-CCeEEEEEecCC
No 144
>5IG9_D ATP grasp ligase; RiPP, Macrocyclase, Precursor Peptide, LIGASE; 2.665A {Microcystis aeruginosa MRC}
Probab=54.33 E-value=1e+02 Score=21.20 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++..|+.+. .+||+..+ +|+++++|+
T Consensus 263 ~~~~~~~~~~l~~~~~-------------~vD~~~~~-~g~~~~iEi 295 (333)
T 5IG9_D 263 EKQLLELMKYFGLNYG-------------AIDMIVTP-DERYIFLEI 295 (333)
T ss_dssp HHHHHHHHHHHTCSEE-------------EEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEe-------------eeeEEECC-CCCEEEEEe
No 145
>6P4W_B Endonuclease Bax1; Helicase, endonuclease, HYDROLASE, HYDROLASE-DNA BINDING PROTEIN complex; HET: PO4, GOL, CL; 2.956A {Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)}
Probab=53.83 E-value=96 Score=24.25 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred HHHHHHHHHHC--CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKN--GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~--G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
|+.-.+.|.+. |+++..+.-.+.++|.-.-+||.... +|+-+++|+
T Consensus 265 E~~f~~~~~~~~~~W~l~re~~~l~~g~~v~iPDF~l~~-~g~~v~lEI 312 (374)
T 6P4W_B 265 EEKFYKDFTNVIKGWKIIREPEPLVVDNRVFIPDFLVEK-GNLKVYVEI 312 (374)
T ss_dssp HHHHHHHHHHHCCSSEEEESCCCEESSSEEECCSEEEEE-TTEEEEEEE
T ss_pred HHHHHHHhhcccCCceeeeCCCceEeCCEEEEeeEEEEE-CCEEEEEEe
No 146
>PF03984.17 ; DUF346 ; Repeat of unknown function (DUF346)
Probab=53.63 E-value=32 Score=15.75 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred EEEEEEECCCCCEE
Q FD01543185_039 37 RADIVAKDANGNYH 50 (68)
Q Consensus 37 r~Diva~d~~G~i~ 50 (68)
++|+++++.+|.++
T Consensus 1 ~~~vf~~~~~~~l~ 14 (35)
T Q9S1V9_STRCO/6 1 QLHVYAADPENRLT 14 (35)
T ss_pred CEEEEEECCCCCEE
No 147
>7R8P_A ATP-grasp domain-containing protein; ATP-grasp superfamily, L-amino acid ligase, LIGASE; HET: ADP; 1.37A {Staphylococcus aureus (strain NCTC 8325 / PS 47)}
Probab=53.50 E-value=1.4e+02 Score=22.07 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
+...+.+....+ .|+ .| -..+||+..+ +|+++++|+-.+ ++...
T Consensus 276 ~~~~~~~~~l~~-~g~-----------~G-~~~iD~~~~~-~g~~~~iEiN~r~~~~~~ 320 (406)
T 7R8P_A 276 EAGRQIMENGVN-QGF-----------FG-VAGFDLLVDE-DDNVYAIDLNFRQNGSTS 320 (406)
T ss_dssp HHHHHHHHHHHH-TTC-----------CE-EEEEEEEECT-TCCEEEEEEESSCCHHHH
T ss_pred HHHHHHHHHHHH-CCC-----------Ce-EEEEEEEEeC-CCCEEEEEEecCCCCcHH
No 148
>1E4E_B VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA; LIGASE, CELL WALL, ANTIBIOTIC RESISTANCE, MEMBRANE, PEPTIDOGLYCAN SYNTHESIS; HET: SO4, PHY, ADP, GOL; 2.5A {ENTEROCOCCUS FAECIUM} SCOP: c.30.1.2, d.142.1.1
Probab=53.45 E-value=1.1e+02 Score=20.96 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+||+..+ +|+++++|+
T Consensus 273 ~~~~~~~~~~l~~-----------~g-~~~iD~~~~~-~g~~~~~Ei 306 (343)
T 1E4E_B 273 QETVKKIYKTLGC-----------RG-LARVDMFLQD-RGRIVLNEV 306 (343)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHhCC-----------Cc-EEEEEEEEcC-CCCEEEEEc
No 149
>5D8D_D D-alanine--D-alanine ligase; D-alanine-D-alanine ligase, Acinetobacter baumannii, Apo structure, Drug target, LIGASE; 2.19A {Acinetobacter baumannii ACICU} SCOP: c.30.1.0, d.142.1.0
Probab=53.35 E-value=1e+02 Score=20.59 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
.+.+.+.++..|+ .| -.++||+..+ +|+++++|+-.. ....+
T Consensus 236 ~~~~~~~~~~~~~-----------~g-~~~vd~~~~~-~g~~~~iEin~~p~~~~~ 278 (308)
T 5D8D_D 236 QALCLRAFQAVGA-----------EG-WGRIDAMQDE-QGNFWLLEVNTVPGMTSH 278 (308)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEEEEEET-TSCEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHHcCC-----------Cc-eEEEEEEECC-CCCEEEEEeeCCCCCCCC
No 150
>4C5C_A D-ALANINE--D-ALANINE LIGASE; LIGASE, DDLB; HET: ATP, DAL, GOL; 1.4A {ESCHERICHIA COLI} SCOP: c.30.1.0, d.142.1.1
Probab=52.95 E-value=1.1e+02 Score=20.87 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+|++..+ +|+++++|+
T Consensus 262 ~~~~~~~~~~l~~-----------~g-~~~~D~~~~~-~g~~~~iEv 295 (330)
T 4C5C_A 262 QALVLKAWTTLGC-----------KG-WGRIDVMLDS-DGQFYLLEA 295 (330)
T ss_dssp HHHHHHHHHHHTC-----------CS-EEEEEEEECT-TSCEEEEEE
T ss_pred HHHHHHHHHHhCC-----------Cc-EEEEEEEECC-CCCEEEEEe
No 151
>3TQT_A D-alanine--D-alanine ligase; Cell envelope, LIGASE; 1.88A {Coxiella burnetii} SCOP: d.142.1.0, c.30.1.0
Probab=52.75 E-value=1.1e+02 Score=22.06 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -.++||+... +|+++++|+
T Consensus 284 ~~~~~~~~~~l~~-----------~g-~~~iD~~~~~-~g~~~~~Ei 317 (372)
T 3TQT_A 284 QQIAIDAFKMVHC-----------SG-MARVDFFVTP-NNKVLVNEI 317 (372)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHcCC-----------CC-eEEEEEEECC-CCcEEEEec
No 152
>3WVQ_C PGM1; ATP grasp domain, LIGASE, BIOSYNTHETIC PROTEIN; HET: SO4, MSE, GOL; 1.955A {Streptomyces cirratus}
Probab=52.72 E-value=1.3e+02 Score=22.40 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 9 IKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
....+.|...|+ .| -..+|++... +|+++++|+-.. +...
T Consensus 300 ~~i~~~l~~~g~-----------~G-~~~iD~~~~~-~g~~~i~EiN~R~~g~~ 340 (447)
T 3WVQ_C 300 RRLCVALHALGY-----------RG-VLSADAVVTP-AGEVLFTEHNGRATGST 340 (447)
T ss_dssp HHHHHHHHHHTC-----------CE-EEEEEEEECT-TCCEEEEEEECSCCTTH
T ss_pred HHHHHHHHHcCC-----------Ce-EEEecEEECC-CCCEEEEEEeCCCCCCC
No 153
>PF11407.12 ; RestrictionMunI ; Type II restriction enzyme MunI
Probab=52.48 E-value=28 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred EEEEEEEECC-CCCEEEEEEE
Q FD01543185_039 36 IRADIVAKDA-NGNYHVFEVK 55 (68)
Q Consensus 36 ~r~Diva~d~-~G~i~~~EvK 55 (68)
+.+|+.-.+. +|+..++|+|
T Consensus 77 i~PD~aI~N~~TgK~lyvEvK 97 (193)
T R7LCJ5_9BACT/2 77 IQPDGAIRNTRTGKTIYVEIK 97 (193)
T ss_pred ccCceEEEeCCCCCEEEEEEE
No 154
>3U4Q_B ATP-dependent helicase/deoxyribonuclease subunit B; Helicase, nuclease, Double strand DNA repair, Protein-DNA complex, HYDROLASE-DNA complex; 2.8A {Bacillus subtilis}
Probab=52.48 E-value=2.1e+02 Score=24.29 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEee------------CC----EEEEEEEEEECCCCC---EEEEEEEcC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKV------------NG----KRIRADIVAKDANGN---YHVFEVKNG 57 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~------------~G----~r~r~Diva~d~~G~---i~~~EvK~g 57 (68)
..........++..++....-|..+.. +| .+-+||.|-.+++|. +.+|+.|+|
T Consensus 894 ~~~~~~~~~~~~~~~~~~~~~E~~f~~~~~~~~~~~~~~~~~~~~l~G~iDrv~~~~~~~~~~~~iiDyKtg 965 (1166)
T 3U4Q_B 894 TRVSGILSEHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVAYKSS 965 (1166)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEEESSSSSSCCEEEEETTTEEEEEBEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCceeeEEEEecCCCCCCCCcEEECCCCCEEEEEEEEEeeEEeecCCceEEEEEEecCC
No 155
>PF06868.15 ; DUF1257 ; Protein of unknown function (DUF1257)
Probab=52.43 E-value=82 Score=19.18 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHCCCeEEEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 15 LKKNGFTVVAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 15 l~~~G~~iv~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
|+..|+.+.....++.- .|....+|+|.+.|++.-.-|.-...
T Consensus 2 L~~lg~~~~~~~~~~~~~~g~~~~~~~vi~~~~~~~iGf~~~~~ 45 (103)
T K9W526_9CYAN/2 2 LTDMGIDWKAGPQPVRGYRGQTRNAEVVIEQDNGYDIGFSSNGK 45 (103)
T ss_pred hhHcCCeeEeCCCcccCCCCCeEEEEEEEEcCCCcEEEEEECCC
No 156
>6DGI_B D-alanine--D-alanine ligase; structural genomics, The Center for Structural Genomics of Infectious Diseases, CSGID, LIGASE; HET: MSE, GOL; 2.3A {Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)} SCOP: d.142.1.0, c.30.1.0
Probab=52.42 E-value=1.1e+02 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+||+... +|+++++|+
T Consensus 265 ~~~~~~~~~~l~~-----------~~-~~~vD~~~~~-~g~~~~~Ei 298 (337)
T 6DGI_B 265 QTYAERVFIHMKL-----------RH-LSRIDFFLTQ-EGQIYLNEV 298 (337)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEEEEECT-TSCEEEEEE
T ss_pred HHHHHHHHHHcCC-----------Cc-eEEEEEEECC-CCCEEEEec
No 157
>PF10117.13 ; McrBC ; McrBC 5-methylcytosine restriction system component
Probab=52.36 E-value=30 Score=24.60 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred EEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 34 KRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 34 ~r~r~Diva~d~~G~i~~~EvK 55 (68)
...++|+|..+ ++.+.++++|
T Consensus 259 ~~~~PDivi~~-~~~~~I~DAK 279 (318)
T Q6LZ73_METMP/6 259 FRLKPDIYAET-SSKKYIMDAK 279 (318)
T ss_pred eeecCeEEEEe-CCcEEEEEcc
No 158
>2Z04_B Phosphoribosylaminoimidazole carboxylase ATPase subunit; PURINE NUCLEOTIDE BIOSYNTHETIC PATHWAY, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, Metabolic; HET: SO4, MSE; 2.35A {Aquifex aeolicus}
Probab=51.96 E-value=1.2e+02 Score=21.65 Aligned_cols=41 Identities=10% Similarity=0.008 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.++..|+ .| -..+||+..+ +|+++++|+-.+ +...
T Consensus 218 ~~~~~~~~~~l~~-----------~G-~~~~d~~~~~-~g~~~~~Ein~r~~~~~ 259 (365)
T 2Z04_B 218 EEITKRLMELLDI-----------VG-VFTVEFFLLK-DGRVLINEFAPRVHNTG 259 (365)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TSCEEEEEEESSCCGGG
T ss_pred HHHHHHHHHhCCC-----------eE-EEEEEEEEcC-CCeEEEEEEeCCCChhH
No 159
>6CK0_B Biotin acetyl coenzyme A carboxylase synthetase; SSGCID, biotin-[acetyl-CoA-carboxylase] ligase activity, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LIGASE; HET: F5D, SO4, EDO; 2.25A {Helicobacter pylori (strain G27)}
Probab=51.24 E-value=83 Score=21.97 Aligned_cols=34 Identities=6% Similarity=-0.005 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred EEEEEEee-CCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 24 AEEVTMKV-NGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 24 ~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
+++|++.. +|..++..+++.|++|.+.+-.-|.+
T Consensus 184 g~~v~~~~~~~~~~~g~~~gId~~G~L~l~~~~~~ 218 (220)
T 6CK0_B 184 SNSFSFHNDWGELVSLKDAELLEDGRICIKGKIYD 218 (220)
T ss_dssp GGGSEEECTTSCEEECTTEEECTTSCEEETTEEEC
T ss_pred CCeEEEEeCCCCEEEEEEEEECCCCCEEEecceec
No 160
>5NRH_B D-alanine--D-alanine ligase; Ligase, complex; HET: EDO, AMP, SO4; 1.3A {Burkholderia pseudomallei} SCOP: c.30.1.0, d.142.1.0
Probab=51.08 E-value=1.1e+02 Score=20.32 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=0.0 Template_Neff=12.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++..|+ .| -..+|++..+ +|+++++|+
T Consensus 243 ~~~~~~~~~~l~~-----------~~-~~~~d~~~~~-~g~~~~iEi 276 (312)
T 5NRH_B 243 KRIARRAFDVLGC-----------TD-WGRADFMLDA-AGNPYFLEV 276 (312)
T ss_dssp HHHHHHHHHTTTC-----------CS-EEEEEEEEET-TSCEEEEEE
T ss_pred HHHHHHHHHHhCC-----------CC-EEEEEEEECC-CCCEEEEEe
No 161
>1YCY_C Conserved hypothetical protein; Structural Genomics, Southeast Collaboratory for Structural Genomics, SECSG, Protein Structure Initiative, PSI, conserved hypothetical protein, Pyrococcus; HET: MSE; 2.8A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=50.77 E-value=84 Score=18.86 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred EEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 23 VAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 23 v~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK 55 (68)
+++.|.|.+ +|..++==+.+.|+.- +++-+++
T Consensus 15 l~k~V~V~l~~g~~~~G~L~~fD~~~-l~L~da~ 47 (71)
T 1YCY_C 15 KGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVV 47 (71)
T ss_dssp TTSEEEEEEC----CEEEEEEECSSE-EEEEEEE
T ss_pred CCCeEEEEECCCcEEEEEEEEECCCe-EEEeeeE
No 162
>2I87_B D-alanine-D-alanine ligase; d-alanine:d-alanine ligase, apo, LIGASE; HET: SO4; 2.0A {Staphylococcus aureus subsp. aureus} SCOP: d.142.1.0, c.30.1.0, l.1.1.1
Probab=50.08 E-value=1.4e+02 Score=21.11 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+|++... +|+++++|+
T Consensus 274 ~~~~~~~~~~l~~-----------~g-~~~~D~~~~~-~g~~~~iEi 307 (364)
T 2I87_B 274 RNMALEAFKATDC-----------SG-LVRADFFVTE-DNQIYINET 307 (364)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHcCC-----------cc-eEEEEEEEcC-CCcEEEEee
No 163
>2R85_A PurP protein PF1517; ATP-grasp superfamily, UNKNOWN FUNCTION; HET: AMP, MPD; 1.7A {Pyrococcus furiosus} SCOP: d.142.1.9, c.30.1.8
Probab=49.75 E-value=71 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
..+||+... +|+++++|+-.. .....
T Consensus 267 ~~vD~~~~~-~g~~~~iEiN~r~~~~~~ 293 (334)
T 2R85_A 267 FCLEGVFTP-DLEFVVFEISARIVAGTN 293 (334)
T ss_dssp EEEEEEECT-TSCEEEEEEECSCCGGGG
T ss_pred eEEEEEECC-CCCEEEEEEecccccCcc
No 164
>6BU2_A Glyoxalase; Epimerase Metal Binding Methylmalonate Pathway VOC superfamily, ISOMERASE; 1.997A {Mycobacterium tuberculosis H37Rv} SCOP: l.1.1.1, d.32.1.0
Probab=49.56 E-value=82 Score=18.38 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECC-CCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDA-NGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~-~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.|++.|+.+..........+..... +..+|| .-.+.|++..+. .+.|
T Consensus 97 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~dp~G~~~e~~~~~~~~~~~~ 151 (151)
T 6BU2_A 97 LDAMCRRLRSQGVRLVYETARRGTANSRINF-IHPKDAGGVLIELVEPAPKLAAAL 151 (151)
T ss_dssp HHHHHHHHHHTTCCBSCSSCEECGGGCEEEE-BCTTTTTTCCEEEEECCCHHHHC-
T ss_pred HHHHHHHHHHCCCeEEEeccccCCCCceEEE-EeeccCCceEEEEEcCCcchhccC
No 165
>PF06616.15 ; BsuBI_PstI_RE ; BsuBI/PstI restriction endonuclease domain
Probab=48.56 E-value=35 Score=24.36 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=0.0 Template_Neff=5.700
Q ss_pred EEEEEECC-------CCCEEEEEEEcCCCCCCc
Q FD01543185_039 38 ADIVAKDA-------NGNYHVFEVKNGKGRLTK 63 (68)
Q Consensus 38 ~Diva~d~-------~G~i~~~EvK~g~a~lT~ 63 (68)
+|+|..|+ .+.++|||+=++.++.++
T Consensus 77 PDvIl~d~~~~~~~~~~~L~lIEaV~S~Gpi~~ 109 (170)
T L0HE59_METFS/1 77 PDIILWDKYLDHGRSENLLIFIEVVASTGSMIQ 109 (170)
T ss_pred CCEEEEeCCccCCCCceEEEEEEEEcCCCCCcH
No 166
>2R7K_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; ATP-grasp superfamily, ATP-binding, Ligase, Magnesium, Manganese, Metal-binding, Nucleotide-binding; HET: AMZ, ACP; 2.1A {Methanocaldococcus jannaschii} SCOP: d.142.1.9, c.30.1.8
Probab=48.53 E-value=1.4e+02 Score=20.86 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred HHHHHHHHHHC------CCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 8 VIKAKADLKKN------GFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 8 e~~a~~~l~~~------G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
.+.+.+.++.- |+ .| -..+|++..+ +|.++++|+-.. ++...
T Consensus 272 ~~~~~~i~~~l~~~~~~~~-----------~g-~~~id~~~~~-~g~~~~iEiN~r~~~~~~ 320 (361)
T 2R7K_A 272 FEMGDKLVAKAKELVPPGM-----------IG-PFCLQSLCNE-NLELVVFEMSARVDGGTN 320 (361)
T ss_dssp HHHHHHHHHHHHHHSTTCC-----------CE-EEEEEEEECT-TSCEEEEEEESSBCGGGG
T ss_pred HHHHHHHHHHHHHhCCCCc-----------cc-cEEEEEEEcC-CCCEEEEEEeCCCCCCCc
No 167
>PF14243.10 ; R2K_3 ; ATP-grasp domain, R2K clade family 3
Probab=48.12 E-value=61 Score=21.02 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred EEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 38 ADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 38 ~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
+||+-.. +|.++++|+-.. ...+
T Consensus 111 vD~~~~~-~g~~~viEvn~~~~~g~ 134 (147)
T D1AAC2_THECD/1 111 TDMALRA-DGQWRVVEVGDGQVSEL 134 (147)
T ss_pred EEEEEcC-CCCEEEEEeCCCCcCCC
No 168
>PF17962.5 ; bMG6 ; Bacterial macroglobulin domain 6
Probab=48.00 E-value=36 Score=20.46 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CEEEEEEEEEECCCCCEE
Q FD01543185_039 33 GKRIRADIVAKDANGNYH 50 (68)
Q Consensus 33 G~r~r~Diva~d~~G~i~ 50 (68)
|..+.+++++.|++|+.+
T Consensus 14 g~~~~~~~~~~d~~g~~~ 31 (113)
T Q0BPJ8_GRABC/6 14 DTPARFRVATFSTDGKPV 31 (113)
T ss_pred CCCcceEEEEECCCCCee
No 169
>PF09571.14 ; RE_XcyI ; XcyI restriction endonuclease
Probab=47.99 E-value=37 Score=26.09 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred HHHHHHHHHCCCeE---EEEEEEEeeCCEE-------EEEEEEEEC----CCCCEEEEEEEcC
Q FD01543185_039 9 IKAKADLKKNGFTV---VAEEVTMKVNGKR-------IRADIVAKD----ANGNYHVFEVKNG 57 (68)
Q Consensus 9 ~~a~~~l~~~G~~i---v~~eVti~~~G~r-------~r~Diva~d----~~G~i~~~EvK~g 57 (68)
+.....|+..|... ..+.+++.-+..| ..+|+..+. +.-.+.++|+|.|
T Consensus 165 ~~I~~~l~~~~~~~~~~~~~~i~~~n~~gR~~~i~F~sdPDi~i~~~~~~~~~~~~aiEIKGG 227 (305)
T A5CYT2_PELTS/1 165 ELIENIIKPKKPDSFRKKSNEIEFNNAAGRQVRIRFGSDPDILVSERSGNQDRHLLAIEVKGG 227 (305)
T ss_pred HHHHHHHhhhCCccccCCCCeeEEEcCCCCEEEEEeCCCccceeccccCCCCeEEEEEEeCCC
No 170
>PF03133.19 ; TTL ; Tubulin-tyrosine ligase family
Probab=47.82 E-value=57 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+||+.-+ +|+++++|+
T Consensus 267 ~g~D~~~d~-~g~~~llEi 284 (321)
T Q9VX74_DROME/1 267 YGYDIIIDN-NLKPWLIEI 284 (321)
T ss_pred EEEEEEECC-CCCEEEEEE
No 171
>4E4T_A Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, purine biosynthesis, ATP binding, lyase, ACAIR; HET: SO4; 1.55A {Burkholderia ambifaria}
Probab=47.81 E-value=1.5e+02 Score=21.65 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
.+.+.+.++..|+ .| -..+||+..+ +|+++++|+-..
T Consensus 267 ~~~~~~~~~~lg~-----------~G-~~~id~~~~~-~g~~~~iEvn~r 303 (419)
T 4E4T_A 267 QQAAVRIADTLGY-----------VG-VLCVEFFVLE-DGSFVANEMAPR 303 (419)
T ss_dssp HHHHHHHHHHHTC-----------CE-EEEEEEEEET-TCCEEEEEEESS
T ss_pred HHHHHHHHHHhCC-----------cE-EEEEEEEECC-CCcEEEEEeeCC
No 172
>8EVW_A D-alanine--D-alanine ligase A; ATP-grasp, LIGASE, LIGASE-PRODUCT complex; HET: ATP, DAL; 1.22A {Pseudomonas aeruginosa}
Probab=47.31 E-value=1.4e+02 Score=20.42 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCCc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLTK 63 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~ 63 (68)
.+.+.+.++..|+ .| -..+|++..+ +|+++++|+-.. ....+.
T Consensus 268 ~~~~~~~~~~~~~-----------~g-~~~~d~~~~~-~g~~~~iEiN~r~~~~~~~ 311 (347)
T 8EVW_A 268 QRLALKVHRALKL-----------SG-YSRTDFRLDE-QGRLWCLEVNTLPGMTATS 311 (347)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEEEEECT-TSCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHcCC-----------ce-EEEeEEEECC-CCCEEEEEeCCCCCCCCCC
No 173
>PF03698.17 ; UPF0180 ; Uncharacterised protein family (UPF0180)
Probab=47.18 E-value=24 Score=21.33 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred hHHHHHHHHHHHHCCCeEE
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVV 23 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv 23 (68)
..+.....++|+++||+++
T Consensus 6 e~~L~~i~~~L~~~Gy~Vv 24 (77)
T Q67SE0_SYMTH/7 6 QDGLENVKQALRAEGYQVT 24 (77)
T ss_pred CCCCHHHHHHHHHCCCEEE
No 174
>PF13351.10 ; DUF4099 ; Protein of unknown function (DUF4099)
Probab=47.17 E-value=1e+02 Score=18.73 Aligned_cols=26 Identities=12% Similarity=0.324 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred EEEEeeCCEEEEEEE---EEECCCCCEEE
Q FD01543185_039 26 EVTMKVNGKRIRADI---VAKDANGNYHV 51 (68)
Q Consensus 26 eVti~~~G~r~r~Di---va~d~~G~i~~ 51 (68)
.+++..+|..++.|. +.++++|.+.+
T Consensus 40 ~i~~~~~g~~~~~~akl~l~~~~dG~~~l 68 (79)
T Q8A4F6_BACTN/9 40 PLKIRTSALRLTMDATLRITVGTDGKPVM 68 (79)
T ss_pred EeEEecCCeEEEEEEEEEEEECCCCCEEE
No 175
>2RK0_A Glyoxalase/Bleomycin resistance protein/dioxygenase domain; 11002z, Glyoxylase, Bleomycin resistance protein, dioxygenase domain, PSI-II, NewYork Structural GenomiX research consortium (NYSGRC), Structural Genomics; HET: MSE; 2.04A {Frankia sp.}
Probab=47.12 E-value=1.1e+02 Score=19.05 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEE
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYH 50 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~ 50 (68)
....+.+.+.|++.|..+...... ...+. +...||+|+..
T Consensus 83 ~~~l~~~~~~l~~~G~~~~~~~~~---~~~~~---~~~~DPdG~~i 122 (136)
T 2RK0_A 83 MTDLDVLEERLAKAGAAFTPTQEL---PFGWI---LAFRDADNIAL 122 (136)
T ss_dssp HHHHHHHHHHHHHHTCCBCCCEEE---TTEEE---EEEECTTCCEE
T ss_pred hHHHHHHHHHHHHCCCccCCceee---CCeEE---EEEECCCCCEE
No 176
>PF07478.17 ; Dala_Dala_lig_C ; D-ala D-ala ligase C-terminus
Probab=46.48 E-value=1.1e+02 Score=18.88 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCCc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLTK 63 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~ 63 (68)
.+.+...++..|+ .| -..+|++..+.+|+++++|+-.. +...++
T Consensus 143 ~~~~~~~~~~~~~-----------~g-~~~~d~~~~~~~~~~~~~Ein~~~~~~~~~ 187 (209)
T DDL_BORBU/136- 143 KEYAFLTYKNLEL-----------RG-MARVDFFVEKKSGTIYLNEINTIPGFTDIS 187 (209)
T ss_pred HHHHHHHHHHcCC-----------cc-eEEEEEEEEcCCCCEEEEEeeCCCCCCCcc
No 177
>6WFI_A Methylmalonyl-CoA epimerase; Epimerase, acid-base, enol, enolate, isomerase; HET: SO4, KFV; 1.37A {Streptomyces coelicolor} SCOP: d.32.1.0
Probab=46.43 E-value=85 Score=18.85 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|.+.|..+......-...|.+..+ +-..||+|.+.-+
T Consensus 92 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~dp~G~~~el 135 (146)
T 6WFI_A 92 VDADAADIRDKGVRVLYDEPRRGSMGSRITF-LHPKDCHGVLTEL 135 (146)
T ss_dssp HHHHHHHHHTTTCCBSCSSCEECGGGCEEEE-ECGGGTTTCCEEE
T ss_pred HHHHHHHHHHcCCEEecCCCccCCCccEEEE-ECcccCCeeEEEE
No 178
>PF14130.10 ; Cap4_nuclease ; Cap4, dsDNA endonuclease domain
Probab=45.72 E-value=56 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred EEEEECCCCCEEEEEEEcC-CCCCCcC
Q FD01543185_039 39 DIVAKDANGNYHVFEVKNG-KGRLTKG 64 (68)
Q Consensus 39 Diva~d~~G~i~~~EvK~g-~a~lT~N 64 (68)
||+... ++.+.++.||+. ...+|.+
T Consensus 40 Di~~~~-~~~~~~~QvK~~~~~~~t~~ 65 (194)
T B0S399_FINM2/1 40 DIELHR-DNGLDFYQVKTINRGNHSSK 65 (194)
T ss_pred cEEEEe-CCCEEEEEEEecCCCCccHH
No 179
>PF00903.29 ; Glyoxalase ; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Probab=45.23 E-value=84 Score=17.22 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred HHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 9 IKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
+.+.+.|++.|..+...... .......=+..+||+|...-+
T Consensus 83 ~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~dp~G~~i~~ 123 (123)
T YRAH_BACSU/2-1 83 DKTYDDLHEKGVKCENKPHD---RKEWSARVAHFRDPDHNLIEI 123 (123)
T ss_pred HHHHHHHHHCCCEeecCCCC---CcccccceEEEECCCCCEEeC
No 180
>PF18299.5 ; R2K_2 ; ATP-grasp domain, R2K clade family 2
Probab=44.67 E-value=1.1e+02 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
..+|++-.. +|.++++|+-.. ...+
T Consensus 111 ~~vD~~~~~-~g~~~vlE~N~~~~~~~ 136 (147)
T W1U220_9FIRM/7 111 YAIDFGVDS-EGRTLLVEVNDGFGLGN 136 (147)
T ss_pred EEEEEEEeC-CCCEEEEEecCCCcccc
No 181
>PF11095.12 ; Gemin7 ; Gem-associated protein 7 (Gemin7)
Probab=44.57 E-value=84 Score=19.18 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred HHHHHHCCCeEEE--EEEEEee-CCEEEEE-EEEEECCCCCEEEEE
Q FD01543185_039 12 KADLKKNGFTVVA--EEVTMKV-NGKRIRA-DIVAKDANGNYHVFE 53 (68)
Q Consensus 12 ~~~l~~~G~~iv~--~eVti~~-~G~r~r~-Diva~d~~G~i~~~E 53 (68)
.++|..--. ..+ +.+++.. +++.+.. .|.+.|++..-.+++
T Consensus 11 er~L~~l~~-~~~~~~~~~~~l~~~~~v~~~~~~a~d~~~~~~~V~ 55 (79)
T L0P8N5_PNEJ8/1 11 MRALKFYKF-VSRCYKPVTFYLWNEKYLSASHFLGTDALETKFCVK 55 (79)
T ss_pred HHHHHHHHH-HcCCCCCcEEEeeCCceEEeEEEEEEcCCccEEEEE
No 182
>6JIL_B Cycloserine biosynthesis protein DcsG; ATP-grasp family, ligase, antibiotic, biosynthesis; HET: ADP, TLA, MSE; 2.32A {Streptomyces lavendulae}
Probab=44.35 E-value=70 Score=21.92 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+|++..+ +|+++++|+
T Consensus 253 ~~id~~~~~-~g~~~~iEv 270 (307)
T 6JIL_B 253 GRVDLVRGA-DGSPMVLEM 270 (307)
T ss_dssp EEEEEEECT-TSCEEEEEE
T ss_pred EEEEEEECC-CCCEEEEEE
No 183
>PF19581.3 ; Glyoxalase_7 ; Glyoxalase superfamily protein
Probab=44.32 E-value=91 Score=17.37 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|.+.|..+..........| .-+..+||+|....+
T Consensus 85 ~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~~~~dp~g~~~~~ 125 (131)
T A9CI35_AGRFC/2 85 VHAFQKELVGKKYRFLNPGVEELPWG----DVMEVIDPFGNRIRF 125 (131)
T ss_pred HHHHHHHHhcCCceeccccccccCcc----eeEEEECCCCCEEEE
No 184
>6UKF_X HhaI Restriction Endonuclease; restriction, modification, protein-DNA complex, iodine phasing, HYDROLASE-DNA complex; HET: 5IU, EDO; 1.0A {Haemophilus parahaemolyticus}
Probab=44.14 E-value=99 Score=23.82 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred cchhHHHHHHHHHHHHCCCeEEEEEEEEee-CCEE-EEEEEEEECCCCCEEEEEEEcCCC
Q FD01543185_039 2 YSGRRGVIKAKADLKKNGFTVVAEEVTMKV-NGKR-IRADIVAKDANGNYHVFEVKNGKG 59 (68)
Q Consensus 2 ~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~-~G~r-~r~Diva~d~~G~i~~~EvK~g~a 59 (68)
...+.+|..+..+|...=.. .++. +|.- +-.||..+. + .+-.||+|.+.|
T Consensus 1 ~~We~FE~ec~~yLn~~~~~------~F~~~GgsdSt~sDI~v~~-~-~~F~IE~K~~~a 52 (258)
T 6UKF_X 1 MNWKEFEVFCVTYLNKTYGN------KFAKKGESDSTTSDILFTG-N-NPFYIEAKMPHS 52 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHCS------CEECCSCCCTTSCSEEECS-S-SCEEEEECCSEE
T ss_pred CCHHHHHHHHHHHHHHHhcc------cceecCCCCCCcccEEEeC-C-CCEEEEEeCCcc
No 185
>3SE7_F VanA; alpha-beta structure, D-alanine-D-lactate ligase, LIGASE; HET: ATP, MG; 3.07A {?}
Probab=43.87 E-value=1.6e+02 Score=20.22 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+|++..+ +|.++++|+
T Consensus 273 ~~~~~~~~~~~~~-----------~g-~~~id~~~~~-~g~~~~~Ei 306 (346)
T 3SE7_F 273 QDTAKAVYRALGC-----------RG-LSRVDLFLTE-DGKVVLNEV 306 (346)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEEEEEET-TSCEEEEEE
T ss_pred HHHHHHHHHHhCC-----------cc-EEEEEEEECC-CCCEEEEEc
No 186
>2GB7_C R.Ecl18kI; ECL18KI-DNA COMPLEX, TYPE II RESTRICTION ENDONUCLEASE, NUCLEOTIDE FLIPPING, BASE EXTRUSION, hydrolase-DNA COMPLEX; 1.7A {Enterobacter cloacae}
Probab=43.82 E-value=95 Score=23.86 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEE----EeeCCEEEEEEEEE-----ECC-CCCEEEEEEEcC-CCCC
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVT----MKVNGKRIRADIVA-----KDA-NGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVt----i~~~G~r~r~Diva-----~d~-~G~i~~~EvK~g-~a~l 61 (68)
...|..+|......|...|+.....-.+ +...+...++|||. ... .....++=||+. .-|+
T Consensus 118 sRaG~~fE~~i~~ll~~~gi~~~~q~~~~~~~f~~~~~~~~~Dfv~P~~~~y~~~~~~~~~ls~KtTlRERW 189 (305)
T 2GB7_C 118 SRAGKEFESILELLMMGAGIPVDVQGAIGKSFFQKNQIGKLVDLVMPGVVQYTSNKRNTMLISAKTTLRERW 189 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEGGGC--------CCCTTEEEEESCHHHHHHCCTTCEEEEEESCCTTGG
T ss_pred ccchHHHHHHHHHHHHhcCCcceeccccccccccccCCCceEeEeccChhhhhcCccceEEEEeeccHHHHH
No 187
>PF19386.3 ; DUF5961 ; Family of unknown function (DUF5961)
Probab=43.72 E-value=75 Score=20.10 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred hhHHHHHHHHHHHHCCCeE-EEEEEEEee----CCEE--EEEEE
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTV-VAEEVTMKV----NGKR--IRADI 40 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~i-v~~eVti~~----~G~r--~r~Di 40 (68)
+.-+|++|..+++.-.... ...+|.|.+ +|.+ +||||
T Consensus 20 ~~SfE~AAvafvE~~~p~~d~d~ev~v~V~D~etG~e~CFriDL 63 (72)
T A0A0Q5VCX7_9CA 20 GHSFEDAAVAFVEAWSPTVSAEGEVQVIVRDIDDGREHCFVVDV 63 (72)
T ss_pred cCCHHHHHHHHHHHcCCCCCCCCcEEEEEEECCCCceEEEEEEc
No 188
>5VEV_A Phosphoribosylamine--glycine ligase; SSGCID, Neisseria gonorrhoeae, Phosphoribosylamine--glycine ligase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LIGASE; HET: SO4, ACT, EDO; 1.9A {Neisseria gonorrhoeae (strain NCCP11945)} SCOP: b.84.2.0, d.142.1.0, c.30.1.0, l.1.1.1
Probab=43.36 E-value=92 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
..+||+..+ +|+++++|+-.+ +...
T Consensus 276 ~~id~~~~~-~g~~~liEiN~r~~~~~ 301 (431)
T 5VEV_A 276 LYAGLMIDQ-SGAPYTIEFNCRFGDPE 301 (431)
T ss_dssp EEEEEEECT-TSCEEEEEECGGGTTTT
T ss_pred EEEeEEEcC-CCCeEEEEEEccCCCcc
No 189
>3K3P_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, Cell shape, Cell wall biogenesis/degradation, Ligase, Magnesium, Manganese, Metal-binding, Nucleotide-binding, Peptidoglycan synthesis; 2.23A {Streptococcus mutans} SCOP: d.142.1.0, c.30.1.0
Probab=43.33 E-value=1.8e+02 Score=21.07 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+|++..+ +|+++++|+
T Consensus 304 ~~~~~~~~~~l~~-----------~g-~~~vD~~~~~-~g~~~viEi 337 (383)
T 3K3P_A 304 RDYAATAFRTLGC-----------CG-LSRCDFFLTE-DGKVYLNEL 337 (383)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHhCC-----------CC-eEEEEEEECC-CCCEEEEEc
No 190
>3L0A_A Putative exonuclease; RER070207002219, Putative exonuclease, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: PE4, MSE; 2.19A {Eubacterium rectale}
Probab=42.95 E-value=1.6e+02 Score=19.84 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred EEEEEEEeeCC--EEEEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 23 VAEEVTMKVNG--KRIRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 23 v~~eVti~~~G--~r~r~Diva~d~~G~i~~~EvK~g 57 (68)
....+.+.+++ .+-++|.|..+ .+ +++.|++
T Consensus 115 ~E~~~~~~~~~~~~~G~iD~v~~~-~~---ivD~Kt~ 147 (266)
T 3L0A_A 115 KQVIMTGELFGAKWKIKMDSYIPG-VA---IVDLKVM 147 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEETT-TE---EEEEEEE
T ss_pred ceEEEEEeeCCeEEEEEeeEEeCC-Cc---EEEEEec
No 191
>2C21_A TRYPANOTHIONE-DEPENDENT GLYOXALASE I; GLYOXALASE I, LYASE, LEISHMANIA MAJOR, TRYPANOTHIONE, GLUTATHIONYLSPERMIDINE, METHYLGLYOXAL, DETOXIFICATION; HET: MPD, MRD; 2.0A {LEISHMANIA MAJOR} SCOP: d.32.1.1
Probab=42.49 E-value=1.1e+02 Score=17.76 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|+.+... .....-+..+||+|++.-+
T Consensus 88 i~~~~~~l~~~g~~~~~~--------~~~~~~~~~~dp~G~~~~~ 124 (144)
T 2C21_A 88 VKELVADMRKHDVPIDYE--------DESGFMAFVVDPDGYYIEL 124 (144)
T ss_dssp HHHHHHHHHHTTCCEEEE--------CSSSSEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHCCCCEeec--------CCCceEEEEECCCCcEEEE
No 192
>6LL9_A D-alanine--D-alanine ligase; Aeromonas hydrophila, D-alanine-D-alanine ligase, cell wall, LIGASE; HET: DAL; 2.7A {Aeromonas hydrophila} SCOP: d.142.1.0, c.30.1.0
Probab=42.30 E-value=1.9e+02 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++.-|+ .| -..+||+... +|+++++|+
T Consensus 306 ~~~~~~~~~~l~~-----------~g-~~~iD~~~~~-~g~~~~iEi 339 (374)
T 6LL9_A 306 HEYALKAFRQLKL-----------TH-LSRIDFFLTE-EGEILLNEI 339 (374)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEEEEECT-TCCEEEEEE
T ss_pred HHHHHHHHHHcCC-----------Cc-eeEEEEEECC-CCCEEEEEc
No 193
>2QGU_A Probable signal peptide protein; NESG, RsR89, Q8XV73, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION; HET: PEF, MSE; 1.5A {Ralstonia solanacearum}
Probab=42.17 E-value=1.1e+02 Score=20.65 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred EEEEeeCCEEEEEEEEEECCCCCEEEEEEEcCCCCCCcCcc
Q FD01543185_039 26 EVTMKVNGKRIRADIVAKDANGNYHVFEVKNGKGRLTKGQK 66 (68)
Q Consensus 26 eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g~a~lT~NQ~ 66 (68)
.+++..+|..+.+++.-+..+|.+.++.+...+-.|..+++
T Consensus 138 ~~~~~~~~~~~~v~~~l~~~~g~WkI~Di~v~g~sl~~~~r 178 (211)
T 2QGU_A 138 RSTVNNNGEPVALDYRVEKSPNGWKVYDINISGLWLSETYK 178 (211)
T ss_dssp EEEEEETTEEEEEEEEEEEETTEEEEEEEEETTEEHHHHHH
T ss_pred EEEEEcCCeeEEEEEEEEEcCCeEEEEEEEEeCccHHHHHH
No 194
>3VPB_B Putative acetylornithine deacetylase; ATP-dependent amine/thiol ligase family, ATP-dependent amine/thiol ligase, LysW, Enzyme-Carrier protein complex, LIGASE; HET: GLU, SO4, ADP; 1.8A {Sulfolobus tokodaii}
Probab=41.91 E-value=85 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+|++..+ +|.++++|+
T Consensus 234 ~~~d~~~~~-~g~~~~iEi 251 (282)
T 3VPB_B 234 VSIDILEHP-NKGYVVNEL 251 (282)
T ss_dssp EEEEEEEET-TTEEEEEEE
T ss_pred EEEEEEEcC-CCCeEEEEE
No 195
>5EAN_A DNA replication ATP-dependent helicase/nuclease DNA2; DNA binding protein, Hydrolase-DNA complex; HET: ADP; 2.36A {Mus musculus}
Probab=41.48 E-value=52 Score=28.17 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred EEEEEEEeeCCEEEEEEEEEE---CCCC----CEEEEEEEcC
Q FD01543185_039 23 VAEEVTMKVNGKRIRADIVAK---DANG----NYHVFEVKNG 57 (68)
Q Consensus 23 v~~eVti~~~G~r~r~Diva~---d~~G----~i~~~EvK~g 57 (68)
+.+++....-|.+-+||++.+ +++| .+.++|+|+|
T Consensus 265 iE~~i~sp~~GlkGkID~~~~~~~~~~~~~~~~~~~lElKTG 306 (1059)
T 5EAN_A 265 IEESIWSPRFGLKGKIDVTVGVKIHRDCKMKYKVMPLELKTG 306 (1059)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred ccccEeCCCccCCCeeEEEEEEEEecCCCceEEEEEEEEEcC
No 196
>PF04174.17 ; CP_ATPgrasp_1 ; A circularly permuted ATPgrasp
Probab=41.30 E-value=72 Score=22.87 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.|+|++... +|.+.++|+=.+ .+++
T Consensus 71 ~R~D~~~~~-~g~~k~~E~N~~~p~g~ 96 (332)
T D0L0C4_HALNC/8 71 AGIDLVRVA-ENDFYVLEDNLRTPSGV 96 (332)
T ss_pred EEeeEEEcC-CCCEEEEccccCCCCcH
No 197
>5H80_A Carboxylase; Multienzymes protein dynamics X-ray crystallography small-angle X-ray scattering carrier protein, ligase; HET: EDO; 1.7A {Deinococcus radiodurans}
Probab=40.88 E-value=2.3e+02 Score=21.12 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.++..|+ .| -..+||+..+ +|+++++|+-.. ...+
T Consensus 284 ~~~~~~~~~~lg~-----------~G-~~~id~~~~~-~g~~~liEiN~r~~~~~ 325 (494)
T 5H80_A 284 IGAALQLAQEVKY-----------RC-LGTFEFLVTP-GGDFYFIEANPRLQVEH 325 (494)
T ss_dssp HHHHHHHHHHTTC-----------EE-EEEEEEEECT-TSCEEEEEEECSCCTTH
T ss_pred HHHHHHHHHHCCC-----------ce-EEEEEEEEcC-CCcEEEEEEeCCCCccc
No 198
>3ORQ_B N5-Carboxyaminoimidazole ribonucleotide synthetase; ATP-GRASP SUPERFAMILY, LIGASE, BIOSYNTHETIC PROTEIN; HET: POP, MSE, ADP; 2.23A {Staphylococcus aureus subsp. aureus}
Probab=40.66 E-value=2e+02 Score=20.25 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
.+.+.+.++..|+ . .-..+||+... +|+++++|+-.. +....
T Consensus 238 ~~~~~~~~~~l~~-----------~-g~~~id~~~~~-~g~~~~~Ein~r~~~~~~ 280 (377)
T 3ORQ_B 238 KEQVNKIIQSIHF-----------I-GTFTVEFFIDS-NNQLYVNEIAPRPHNSGH 280 (377)
T ss_dssp HHHHHHHHHHSCC-----------C-EEEEEEEEEET-TCCEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHHCCC-----------c-eEEEEEEEECC-CCeEEEEEeeCCCCcccc
No 199
>2PJS_A Uncharacterized protein Atu1953; Agrobacterium tumefaciens, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural; HET: MSE; 1.85A {Agrobacterium tumefaciens str.} SCOP: d.32.1.2
Probab=40.58 E-value=1.1e+02 Score=17.16 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|..+.....+....+....+ +||+|.+.-+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~----~dp~G~~~~~ 115 (119)
T 2PJS_A 75 FDEVHARILKAGLPIEYGPVTEAWGVQRLFL----RDPFGKLINI 115 (119)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECTTSCEEEEE----ECTTSCEEEE
T ss_pred HHHHHHHHHHCCCCcccCCeeccCCcEEEEE----ECCCCCEEEE
No 200
>3WNZ_A Alanine-anticapsin ligase BacD; ATP-grasp Fold, Ligase, ATP binding; HET: ADP; 1.9A {Bacillus subtilis}
Probab=40.55 E-value=2.3e+02 Score=21.02 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGR 60 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~ 60 (68)
.+.+.+.++.-|+ .+.-+.+|++-.+ +|+++++|+-.+ .+.
T Consensus 293 ~~~~~~~~~~l~~-----------~~~~~~~d~~~~~-~g~~~~iEin~r~~g~ 334 (470)
T 3WNZ_A 293 VEAAKKANEGLGL-----------QNCATHTEIKLMK-NREPGLIESAARFAGW 334 (470)
T ss_dssp HHHHHHHHHHHTC-----------CSEEEEEEEEEEG-GGEEEEEEEESSCCST
T ss_pred HHHHHHHHHHcCC-----------CCceEEEEEEEcC-CCCEEEEEEeCCCCcC
No 201
>3CW1_I Small nuclear ribonucleoprotein-associated proteins B and B; pre-mRNA splicing, spliceosome, RNA-binding domain, Sm fold, zinc finger, RNA recognition motif, 5' splice site, SPLICING; 5.493A {Homo sapiens}
Probab=40.43 E-value=1.8e+02 Score=19.97 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred EEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 23 VAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 23 v~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK 55 (68)
+.+.|++.+ +|..+.--|++.|..-++++-+++
T Consensus 13 ~~~~v~V~l~dgr~~~G~l~~~D~~mNlvL~d~~ 46 (174)
T 3CW1_I 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCD 46 (174)
T ss_pred CCCeEEEEECCCcEEEEEEEEecCCCCEEEeEeE
No 202
>PF01002.23 ; Flavi_NS2B ; Flavivirus non-structural protein NS2B
Probab=40.34 E-value=67 Score=22.04 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred eeCCEEEEEEEEEECCCCCEEEEE
Q FD01543185_039 30 KVNGKRIRADIVAKDANGNYHVFE 53 (68)
Q Consensus 30 ~~~G~r~r~Diva~d~~G~i~~~E 53 (68)
...|...|+| |.+|++|+++++|
T Consensus 63 ~~sG~s~rld-V~~d~~G~f~L~~ 85 (127)
T POLG_YEFV1/135 63 EISGSSARYD-VALSEQGEFKLLS 85 (127)
T ss_pred cccccceeeE-EEECCCCCeeeec
No 203
>1DC1_A BSOBI RESTRICTION ENDONUCLEASE; PROTEIN-DNA COMPLEX, RESTRICTION ENDONUCLEASE, THERMOPHILIC ENZYME, DEGENERATE DNA RECOGNITION, HYDROLASE-DNA COMPLEX; HET: DIO; 1.7A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=40.00 E-value=1.2e+02 Score=23.85 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred EEEEEeeCCE-EE------------EEEEEEE--------------CCCCCEEEEEEEcC
Q FD01543185_039 25 EEVTMKVNGK-RI------------RADIVAK--------------DANGNYHVFEVKNG 57 (68)
Q Consensus 25 ~eVti~~~G~-r~------------r~Diva~--------------d~~G~i~~~EvK~g 57 (68)
+.+....++. |+ .+|++-. +++-.+.++|+|.|
T Consensus 185 ~~i~w~~~~~~R~l~f~~~~~lv~~n~Di~l~~~~~~~~~~~~~~~~~~~~i~~gEiKGG 244 (323)
T 1DC1_A 185 KGISWTINGKHRTLMYNITVSLVKKNVDICLFNCEPEIYTPQKVHQQPEKYLLLGELKGG 244 (323)
T ss_dssp EEEEEEETTEEEEEEEEEEETTTTEEEEEEEEESCC---------CCGGGEEEEEEEECC
T ss_pred ceEEEEECCeEEEEEEeeeeeeccccCCEEEEcCCCcccCcccccCCCCcEEEEEEEccc
No 204
>4G6X_A Glyoxalase/bleomycin resistance protein/dioxygenase; Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, dioxygenase, OXIDOREDUCTASE; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=39.96 E-value=1.4e+02 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|..+...... .+.. -.+..+||+|+...+
T Consensus 109 ~~~~~~~l~~~g~~~~~~~~~---~~~~--~~~~~~dp~G~~~~l 148 (155)
T 4G6X_A 109 IAAEYERLSALGVRFTQEPTD---MGPV--VTAILDDTCGNLIQL 148 (155)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE---CSSC--EEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHCCCeeecCCCC---CCCe--EEEEEECCCCCEEEE
No 205
>2P0A_A Synapsin-3; synapsin, neurotransmitter release, schizophrenia, vesicle transport, Structural Genomics, Structural Genomics Consortium, SGC, NEUROPEPTIDE; HET: SO4, EDO, ANP; 1.9A {Homo sapiens} SCOP: d.142.1.3, c.30.1.0
Probab=39.90 E-value=91 Score=21.78 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+|++-.+ +|+++++|+
T Consensus 276 ~~iD~~~~~-~g~~~~iEi 293 (344)
T 2P0A_A 276 CAVKAVHSK-DGRDYIIEV 293 (344)
T ss_dssp EEEEEEEET-TSCEEEEEE
T ss_pred EEEEEEEcC-CCCEEEEEE
No 206
>3SM4_C Exonuclease; homologous recombination, DNA repair, recombineering, single-strand annealing, Type II Restriction Endonuclease Fold, 5'-3' dsDNA exonuclease, HYDROLASE-DNA; HET: PO4; 1.88A {Enterobacteria phage lambda} SCOP: c.52.1.13, l.1.1.1
Probab=39.71 E-value=1.8e+02 Score=19.44 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred hhHHHHHHHHHHHHC-CCeEEEEEEEEee--CCEEEEEEEEEECCCCCEEEEEEEcC-CCC
Q FD01543185_039 4 GRRGVIKAKADLKKN-GFTVVAEEVTMKV--NGKRIRADIVAKDANGNYHVFEVKNG-KGR 60 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~-G~~iv~~eVti~~--~G~r~r~Diva~d~~G~i~~~EvK~g-~a~ 60 (68)
|..-|..+...++.. |..+...-..+.. .-....+|-+..+ ++ ++|+|+. +..
T Consensus 84 G~~~E~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~spDg~~~~-~~---~~EiK~~~~~~ 140 (229)
T 3SM4_C 84 GKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSD-GN---GLELACPFTSR 140 (229)
T ss_dssp HHHTHHHHHHHHHHHHCCCEECCCCEESSTTCCEEECCSEEETT-SC---EEEEECCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCceecCCEEEeCCCCCceecCcEEecC-CC---EEEEeCCCCch
No 207
>2Q7D_A Inositol-tetrakisphosphate 1-kinase; INOSITOL, INOSITOL KINASE, KINASE, ITPK1, INOSITOL 1, 3, 4-5/6-KINASE, PHOSPHATE, INOSITOL PHOSPHATE, INOSITOLPHOSPHATE, POLYPHOSPHATE, Transferase; HET: SO4, ANP; 1.6A {Homo sapiens}
Probab=39.56 E-value=1.1e+02 Score=21.67 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
.++||+-.+.+|.++++|+
T Consensus 289 ~~vD~~~~~~~~~~~iiEv 307 (346)
T 2Q7D_A 289 FGIDIIINNQTGQHAVIDI 307 (346)
T ss_dssp EEEEEEECTTTCCEEEEEE
T ss_pred EEEEEEEeCCCCCEEEEEe
No 208
>7YBU_B Propionyl-CoA carboxylase alpha chain, mitochondrial; Cryo-EM, PCC, Mitochondria, CYTOSOLIC PROTEIN; HET: BTI; 2.2A {Homo sapiens}
Probab=38.62 E-value=2.9e+02 Score=22.48 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.++.-|+ .|. ..+||+... +|+++++|+-.. ++.+
T Consensus 317 ~~~~~~i~~~lg~-----------~g~-~~id~~~~~-~g~~~liEiN~R~g~~~ 358 (728)
T 7YBU_B 317 GEQAVALARAVKY-----------SSA-GTVEFLVDS-KKNFYFLEMNTRLQVEH 358 (728)
T ss_dssp HHHHHHHHHHTTC-----------CSE-EEEEEEECT-TCCEEEEEEECSCCTTH
T ss_pred HHHHHHHHHHcCC-----------Ccc-eeeEEEECC-CCCEEEEEEeCCCCCCC
No 209
>3GLK_A Acetyl-CoA carboxylase 2; ATP binding, carboxylase, ATP-binding, Biotin, Fatty acid biosynthesis, Ligase, Lipid synthesis, Manganese, Membrane, Metal-binding, Multifunctional enzyme; 2.1A {Homo sapiens}
Probab=38.53 E-value=2.9e+02 Score=21.44 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
..-.+.+.+.++..|+ .| -..+|++... +|+++++|+-.+ ...+
T Consensus 325 ~~i~~~~~~~~~~lg~-----------~g-~~~id~~~~~-~g~~~~iEiN~r~~g~~ 369 (540)
T 3GLK_A 325 EFMEQCAIRLAKTVGY-----------VS-AGTVEYLYSQ-DGSFHFLELNPRLQVEH 369 (540)
T ss_dssp HHHHHHHHHHHHHHTC-----------CE-EEEEEEEEET-TSCEEEEEEECSCCTTH
T ss_pred HHHHHHHHHHHHHhCC-----------Cc-eeeeEEEEeC-CCcEEEEEEECCCcccc
No 210
>7L1K_C N-alpha-acetyltransferase 38, NatC auxiliary subunit; NatB, NAA20, NAA25, TRANSFERASE; HET: IHP, CMC; 3.16A {Schizosaccharomyces pombe (strain 972 / ATCC 24843)}
Probab=38.40 E-value=1.6e+02 Score=18.45 Aligned_cols=33 Identities=9% Similarity=0.291 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred EEEEEEEee-CCEEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 23 VAEEVTMKV-NGKRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 23 v~~eVti~~-~G~r~r~Diva~d~~G~i~~~EvK 55 (68)
+++.|.+.+ +|..+.--+.+.|...++++-++.
T Consensus 56 l~~~v~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 89 (116)
T 7L1K_C 56 LNRSVHIEIFDERKFIGKFLCTDREGAAILSNTT 89 (116)
T ss_dssp TTSEEEEECSSSCEEEEEEEEECSSCBCEEEEEE
T ss_pred cCCcEEEEECCCcEEEEEEEEECCCCCEEEeceE
No 211
>PF14811.10 ; TPD ; Protein of unknown function TPD sequence-motif
Probab=38.16 E-value=11 Score=25.42 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CcchhHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECC---CCCEEE-EEEEcC-CCC
Q FD01543185_039 1 AYSGRRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDA---NGNYHV-FEVKNG-KGR 60 (68)
Q Consensus 1 ~~~G~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~---~G~i~~-~EvK~g-~a~ 60 (68)
+..|..+|......|.+.|. .--.|=-++..|...-+||.-..| +|..+- ||+|+. +.+
T Consensus 28 ~~~g~~~E~~l~~~L~~~~i-~f~tE~~lr~~g~~kTPD~ll~~p~~i~g~~v~WIEsKa~fg~~ 91 (138)
T A0A7M7QY96_NAS 28 DCVGIEYEMKLEECLKERNI-PYSNEDHLRLKGYDKTPDCKLEVPIAVNGFVVNWIESKAQFGNK 91 (138)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CccCHHHHHHcCCCCCCCccccCCeEECCEEeEEeehhhhcCCc
No 212
>2PN1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grasp domain, carbamoylphosphate synthase large subunit (split gene in MJ), Structural Genomics, Joint Center for; HET: MSE; 2.0A {Exiguobacterium sibiricum}
Probab=38.13 E-value=2.1e+02 Score=19.87 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.++.-|+ .| -..+|++.. +|.++++|+-.. ++.+
T Consensus 236 ~~~~~~~~~~l~~-----------~G-~~~vd~~~~--~~~~~~iEin~r~~~~~ 276 (331)
T 2PN1_A 236 FELVEHVLDGSGL-----------VG-PLDFDLFDV--AGTLYLSEINPRFGGGY 276 (331)
T ss_dssp HHHHHHHHTTTCC-----------CE-EEEEEEEEE--TTEEEEEEEESSCCTTH
T ss_pred HHHHHHHHHHcCC-----------Cc-ceEEEEEEe--CCeEEEEEEeCCCCCCh
No 213
>3LWB_A D-alanine--D-alanine ligase; D-alanine--D-alanine Ligase, Ddl, D-alanyl--D-alanine Ligase, Rv2981c, D-alanine, Structural Genomics, TB Structural Genomics Consortium, TBSGC, ATP-binding, Cell; 2.1A {Mycobacterium tuberculosis} SCOP: d.142.1.0, c.30.1.0
Probab=38.01 E-value=2.2e+02 Score=20.09 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.++..|+ .| -.++||+..+ +| ++++|+
T Consensus 299 ~~~~~~~~~~l~~-----------~g-~~~vD~~~~~-~g-~~~~Ei 331 (373)
T 3LWB_A 299 RQLAIRAFAAIDC-----------RG-LARVDFFLTD-DG-PVINEI 331 (373)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEEEEEET-TE-EEEEEE
T ss_pred HHHHHHHHHHcCC-----------cc-eeEEEEEEcC-CC-cEEEee
No 214
>1Z2N_X inositol 1,3,4-trisphosphate 5/6-kinase; Inositol phosphate kinase, ATP-grasp, TRANSFERASE; HET: ADP; 1.2A {Entamoeba histolytica}
Probab=37.97 E-value=1.1e+02 Score=21.63 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred EEEEEEEECCC-CCEEEEEE
Q FD01543185_039 36 IRADIVAKDAN-GNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~-G~i~~~Ev 54 (68)
..+||+..+ + |+++++|+
T Consensus 277 ~~~D~~~~~-~~g~~~~iEi 295 (324)
T 1Z2N_X 277 CGIDFIKEN-EQGNPLVVDV 295 (324)
T ss_dssp EEEEEECGG-GCSSCEEEEE
T ss_pred EEEEEEEeC-CCCCEEEEEE
No 215
>2PP6_A Gifsy-2 prophage ATP-binding sugar transporter-like protein; beta barrel, 4 helix bundle, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: MSE; 2.7A {Salmonella typhimurium LT2} SCOP: b.106.1.2, l.1.1.1
Probab=37.82 E-value=1.6e+02 Score=18.41 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred EEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 28 TMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 28 ti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
+|.++|.+.+++=+..| +|.+.++
T Consensus 69 ~v~~dg~~y~V~~~~~d-~G~~~i~ 92 (102)
T 2PP6_A 69 RVVLRGSEFTVTRIRRF-NGKPQLT 92 (102)
T ss_dssp EEEETTEEEEEEEEEEE-TTEEEEE
T ss_pred EEEECCEEEEEEEEecc-CCEEEEE
No 216
>7VSR_N Protein McrC; AAA+ protein, GTPase, endonuclease, McrBC, stalkless mutant, DNA BINDING PROTEIN; HET: GNP;{Escherichia coli (strain K12)}
Probab=37.26 E-value=66 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCEEEEEEEEEECCCCCEEEEEEE
Q FD01543185_039 32 NGKRIRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 32 ~G~r~r~Diva~d~~G~i~~~EvK 55 (68)
...+.++||+.++ .+.+.++++|
T Consensus 199 ~~~~~~PDi~i~~-~~~~~ViDaK 221 (310)
T 7VSR_N 199 LLPRMETDITIRS-SEKILIVDAK 221 (310)
T ss_dssp TSCCEECSEEEEC-SSCEEEEEEC
T ss_pred cCCcccccEEEEe-CCeEEEEEee
No 217
>7MGV_A CdnC; Ribosomally synthesized, post-translationally modified peptide, Natural products ATP-grasp ligase, Precursor peptide, Graspetide omega-ester macrocycles macrolactone, LIGASE; HET: ADP; 2.44A {Chryseobacterium gregarium DSM 19109}
Probab=37.06 E-value=1e+02 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+|++..+ +|.++++|+
T Consensus 298 ~~vd~~~~~-~g~~~~iEi 315 (360)
T 7MGV_A 298 GAIDMIVSP-EDEYYFIEI 315 (360)
T ss_dssp EEEEEEECT-TCCEEEEEE
T ss_pred EEeEEEECC-CCCEEEEEE
No 218
>3OUZ_B Biotin carboxylase; Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, alpha-beta fold, Carboxylase, cytosol, LIGASE; HET: TLA, FMT, SRT, MSE, GOL, ADP; 1.902A {Campylobacter jejuni subsp. jejuni} SCOP: b.84.2.0, d.142.1.0, c.30.1.0
Probab=36.97 E-value=2.5e+02 Score=20.33 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
..-.+.+.+.++..|+ . .-..+|++..+ +|+++++|+-.+ ...+
T Consensus 257 ~~i~~~~~~~~~~lg~-----------~-g~~~~d~~~~~-~g~~~iiEin~r~~g~~ 301 (446)
T 3OUZ_B 257 TRLHETAIKAAKAIGY-----------E-GAGTFEFLVDK-NLDFYFIEMNTRLQVEH 301 (446)
T ss_dssp HHHHHHHHHHHHHTTC-----------C-EEEEEEEEECT-TCCEEEEEEESSCCTTH
T ss_pred HHHHHHHHHHHHHhCC-----------c-eEEEEEEEEcC-CCCEEEEEEeCCCCcch
No 219
>5IG8_B ATP grasp ligase; RiPP, Macrocyclase, LIGASE; 2.278A {Microcystis aeruginosa MRC}
Probab=36.96 E-value=2.3e+02 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~Ev 54 (68)
.+.+.+.+++-|+... .+||+... +|+++++|+
T Consensus 266 ~~~~~~~~~~lg~~~~-------------~~d~~~~~-~g~~~~iEi 298 (335)
T 5IG8_B 266 LQQLQIFMANLGLNFG-------------AFDFILTP-GGEYVFLEV 298 (335)
T ss_dssp HHHHHHHHHHHTCSEE-------------EEEEEECT-TSCEEEEEE
T ss_pred HHHHHHHHHHcCCCeE-------------EEEEEECC-CCCEEEEEE
No 220
>4FCZ_A Toluene-tolerance protein; Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSPORT PROTEIN; HET: MSE; 2.604A {Pseudomonas putida}
Probab=36.54 E-value=1.3e+02 Score=20.95 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred EEEEee-CCEEEEEEEEEECCCCCEEEEEEEcCCCCCCcCcc
Q FD01543185_039 26 EVTMKV-NGKRIRADIVAKDANGNYHVFEVKNGKGRLTKGQK 66 (68)
Q Consensus 26 eVti~~-~G~r~r~Diva~d~~G~i~~~EvK~g~a~lT~NQ~ 66 (68)
.+.+.. +|..+.+|+.-...+|.+.++++...+-.|..+++
T Consensus 133 ~~~i~~~~~~~~~v~~~l~~~~g~WkI~Dv~v~Gisl~~~~r 174 (223)
T 4FCZ_A 133 GMKVTGNNGAVYPVQYTLENIGGEWKVRNVIVNGINIGKLFR 174 (223)
T ss_dssp CEEEECSSSCEEEEEEEEEESSSCEEEEEEEETTEEHHHHHH
T ss_pred EEEEEcCCCCEEEEEEEEEEeCCeEEEEEEEEeCcchHHHHH
No 221
>PF03975.17 ; CheD ; CheD chemotactic sensory transduction
Probab=36.39 E-value=1.3e+02 Score=18.67 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred hhHHHHHHHHHHHHCCCeEEEEEE
Q FD01543185_039 4 GRRGVIKAKADLKKNGFTVVAEEV 27 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~iv~~eV 27 (68)
|..-.+.+.+.|++.|..|+.+.+
T Consensus 59 G~~N~~~a~~~L~~~~i~i~~~d~ 82 (103)
T E3DPL7_HALPG/5 59 GARNIVAVKETLKDLGIKILGSDV 82 (103)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEc
No 222
>3VOT_A L-amino acid ligase, BL00235; ATP-GRASP MOTIF, LIGASE, ATP-BINDING; HET: ADP, PG4; 1.8A {Bacillus licheniformis}
Probab=36.36 E-value=2.6e+02 Score=20.25 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGR 60 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~ 60 (68)
.+.+.+.++..|+ .-.-..+||+..+ +|.++++|+-.. ...
T Consensus 253 ~~~~~~~~~~~g~-----------~~g~~~~d~~~~~-~g~~~~iEin~r~~~~ 294 (425)
T 3VOT_A 253 VKEVTGAVSALGI-----------HQGPAHTELRLDK-DGTPYVIEVGARIGGS 294 (425)
T ss_dssp HHHHHHHHHHTTC-----------CSEEEEEEEEECT-TCCEEEEEEESSCGGG
T ss_pred HHHHHHHHHHhCC-----------CCcceEEEEEECC-CCCEEEEEEcCCCCCc
No 223
>7VMV_C Core protein; NS3 Protease, VIRAL PROTEIN; 3.351A {Dengue virus 4}
Probab=36.20 E-value=81 Score=20.43 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred eeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCCcCcc
Q FD01543185_039 30 KVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLTKGQK 66 (68)
Q Consensus 30 ~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~NQ~ 66 (68)
.+.|.-.|+| |.+|++|.+.++|-+.. ....-..|+
T Consensus 46 eisGsS~rLd-V~~d~~Gdf~L~~ee~~~~~~~~~~~~ 82 (82)
T 7VMV_C 46 DITGSSPIIE-VKQDEDGSFSIRDIEETNMIAQVKTQR 82 (82)
T ss_dssp BCTTCCCCEE-EECCCSSCCCEEEECCCCCCEEEC---
T ss_pred eeeCcCceEE-EEECCCCCeEeeecCCCccEEEeeecC
No 224
>PF09810.13 ; Exo5 ; Exonuclease V - a 5' deoxyribonuclease
Probab=36.12 E-value=1.4e+02 Score=23.34 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred EEEEEEEEEECCC-----------------------------------------------CCEEEEEEEcC-CCCCCc
Q FD01543185_039 34 KRIRADIVAKDAN-----------------------------------------------GNYHVFEVKNG-KGRLTK 63 (68)
Q Consensus 34 ~r~r~Diva~d~~-----------------------------------------------G~i~~~EvK~g-~a~lT~ 63 (68)
.+-++|.|..+.+ |.+++++.|++ ...+..
T Consensus 108 i~G~iD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiD~KT~~~~~~~~ 185 (360)
T L8FN33_PSED2/1 108 VGGVIDEVGFMCPDVEKEEEAVHVFAVARGEAPPQPRTTLPTDQRALDEYLHPAPPQPTKRKLYITDVKTRSVASLPR 185 (360)
T ss_pred EeeeeeEEEEeCCCcchhHHHhhhhhccCCCCCCCCCCCCCCchhhHHHhcCCCCCCCCCceEEEEeeCCCCCCCCCC
No 225
>7KCT_A 2-oxoglutarate carboxylase small subunit; biotin carboxylase, biotin-dependent carboxylase, pyruvate carboxylase, ATP-grasp, Aquificales, rTCA, dimer interface, bicarbonate, Sequence Determining Positions, structural; HET: ADP; 2.02A {Hydrogenobacter thermophilus} SCOP: b.84.2.0, d.142.1.0, c.30.1.0, l.1.1.1
Probab=35.25 E-value=2.9e+02 Score=20.56 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.++..|+ .| -..+||+..+ +|+++|+|+-.+ ...+
T Consensus 264 ~~~~~~~~~~lg~-----------~g-~~~id~~~~~-~g~~~~lEin~r~~~~~ 305 (481)
T 7KCT_A 264 GSLVVKAAKEIGY-----------YS-AGTMEFIADE-KGNLYFIEMNTRIQVEH 305 (481)
T ss_dssp HHHHHHHHHHTTC-----------CE-EEEEEEEECT-TSCEEEEEEECSCCTTH
T ss_pred HHHHHHHHHHhCC-----------Ce-eeeeEEEEcC-CCCEEEEEecCCCCCcc
No 226
>PF18257.5 ; DsbG_N ; Disulfide isomerase DsbG N-terminal
Probab=35.15 E-value=1.5e+02 Score=18.87 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred EEEeeCCEEEEEEEEEECCCCCEEE
Q FD01543185_039 27 VTMKVNGKRIRADIVAKDANGNYHV 51 (68)
Q Consensus 27 Vti~~~G~r~r~Diva~d~~G~i~~ 51 (68)
|.++.+++..|+-|+|-+ ||++.+
T Consensus 30 Vive~~~~~~~ip~las~-DGk~ii 53 (89)
T Q7M8B9_WOLSU/2 30 VSVESATSGQRFPLFASL-DGNNII 53 (89)
T ss_pred EEEEcCCCCeEEeEEEeC-CCCeEE
No 227
>2EJ9_A Putative biotin ligase; Biotin Biosynthesis, Monomer, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural; HET: BTN; 2.0A {Methanocaldococcus jannaschii}
Probab=35.09 E-value=2.2e+02 Score=19.63 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeC-CEEEEEEEEEECCCCCEEE
Q FD01543185_039 7 GVIKAKADLKKNGFTVVAEEVTMKVN-GKRIRADIVAKDANGNYHV 51 (68)
Q Consensus 7 Ge~~a~~~l~~~G~~iv~~eVti~~~-G~r~r~Diva~d~~G~i~~ 51 (68)
+.....+...+.-+ ..+++|++... |....--++..|++| +.+
T Consensus 176 ~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~~G~~~gId~~G-L~l 219 (237)
T 2EJ9_A 176 DDYEILKKYKKYSI-TIGKQVKILLSNNEIITGKVYDIDFDG-IVL 219 (237)
T ss_dssp CHHHHHHHHHHHBS-STTCEEEEEETTSCEEEEEEEEECSSE-EEE
T ss_pred CcHHHHHHHHHhhC-cCCCEEEEEeCCCCEEEEEEEEECCCc-EEE
No 228
>3E5N_A D-alanine-D-alanine ligase A; Bacterial blight, D-alanine-D-alanine ligase, PIP (Plant-Inducible Promoter) box peptidoglycan biosynthesis Xanthomonas oryzae pv. oryzae, ATP-binding, Cell; 2.0A {Xanthomonas oryzae pv. oryzae} SCOP: d.142.1.0, c.30.1.0
Probab=35.08 E-value=2.7e+02 Score=20.13 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCCc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLTK 63 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~ 63 (68)
.+.+.+.++.-|+ .| -..+|++... +|.++++|+-.. ......
T Consensus 302 ~~~~~~~~~~l~~-----------~g-~~~vD~~~~~-~g~~~liEiN~rp~~~~~~ 345 (386)
T 3E5N_A 302 QQIAVQAYQALGC-----------AG-MARVDVFLCA-DGRIVINEVNTLPGFTRIS 345 (386)
T ss_dssp HHHHHHHHHHHTC-----------CS-EEEEEEEECT-TCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHhCC-----------Cc-EEEEEEEEcC-CCcEEEEecCCCCCCCCcc
No 229
>1BIA_A BirA BIFUNCTIONAL PROTEIN; TRANSCRIPTION REGULATION; 2.3A {Escherichia coli} SCOP: b.34.1.1, a.4.5.1, d.104.1.2
Probab=34.81 E-value=2.2e+02 Score=20.93 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEE
Q FD01543185_039 7 GVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHV 51 (68)
Q Consensus 7 Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~ 51 (68)
+.....+.+.+.-+ ..++.|++..++....--+++.|++|.+.+
T Consensus 257 ~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~G~~~gI~~~G~L~l 300 (321)
T 1BIA_A 257 GLAPYLSRWEKLDN-FINRPVKLIIGDKEIFGISRGIDKQGALLL 300 (321)
T ss_dssp TTGGGHHHHHHHBT-TTTSEEEEEETTEEEEEEEEEECTTSCEEE
T ss_pred CcHHHHHHHHHHHc-ccCCeEEEEECCEEEEEEEEeeCCCCcEEE
No 230
>PF14403.10 ; CP_ATPgrasp_2 ; Circularly permuted ATP-grasp type 2
Probab=34.62 E-value=1.2e+02 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.|+|++- +++|.+.++|+=.+ .+++
T Consensus 71 ~R~D~~~-~~~g~~ki~E~N~~~p~g~ 96 (377)
T A0A068NMM3_FIM 71 CGTDIIR-DVDGTYRVLEDNCRTPSGV 96 (377)
T ss_pred EEeEEEE-CCCCCEEEEecccCCCCcH
No 231
>6HMV_B Genome polyprotein; complex, Golgi, enterovirus, picornavirus, VIRAL PROTEIN; 2.244A {Homo sapiens}
Probab=34.40 E-value=1.4e+02 Score=17.52 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=0.0 Template_Neff=4.400
Q ss_pred HHHHHHHHHCCCeEEE---EEEEEe
Q FD01543185_039 9 IKAKADLKKNGFTVVA---EEVTMK 30 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~---~eVti~ 30 (68)
+..++|++++|| |+. ..++++
T Consensus 22 ~eV~~Yc~~kGw-Iip~~~~~~~ie 45 (50)
T 6HMV_B 22 QEARDACQKKGW-IVIHPSNELVVE 45 (50)
T ss_dssp HHHHHHHHHTTS-SEECCGGGCEEE
T ss_pred HHHHHHHHHcCC-EEecCCceeEee
No 232
>5K2M_B RimK-related lysine biosynthesis protein; ATP-dependent amine/thiol ligase family Amino-group carrier protein Lysine biosynthesis Arginine biosynthesis, BIOSYNTHETIC PROTEIN; HET: SO4, R0K, PO4, ADP, UN1; 2.18A {Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
Probab=34.04 E-value=1.2e+02 Score=20.03 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+|++..+ +| ++++|+
T Consensus 226 ~~vd~~~~~-~~-~~~iE~ 242 (273)
T 5K2M_B 226 LAIDIFESE-KG-LLVNEV 242 (273)
T ss_dssp EEEEEEEET-TE-EEEEEE
T ss_pred EEEEEEEcC-Cc-eEEEEe
No 233
>7U56_B D-alanine--D-alanine ligase; SSGCID, cell wall formation, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LIGASE; HET: AMP, EDO; 1.85A {Klebsiella pneumoniae subsp. pneumoniae HS11286}
Probab=33.96 E-value=2.7e+02 Score=19.76 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCCc
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLTK 63 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT~ 63 (68)
.+.+.+.++.-|+ .| -..+|++..+ +|+++++|+-.. .....+
T Consensus 302 ~~~~~~~~~~l~~-----------~G-~~~iD~~~~~-~g~~~~iEiN~r~~~~~~~ 345 (384)
T 7U56_B 302 RAIAVQAYQTLGC-----------SG-MARVDVFLTA-DNEVVINEINTLPGFTNIS 345 (384)
T ss_dssp HHHHHHHHHHHTC-----------CE-EEEEEEEECT-TCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHhCC-----------Cc-eEEEEEEECC-CCcEEEEEecCCCCCCCcc
No 234
>PF08608.16 ; Wyosine_form ; Wyosine base formation
Probab=33.90 E-value=41 Score=19.21 Aligned_cols=10 Identities=30% Similarity=0.129 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCEEEEEEEc
Q FD01543185_039 47 GNYHVFEVKN 56 (68)
Q Consensus 47 G~i~~~EvK~ 56 (68)
|+..|||+|.
T Consensus 2 ~~PdFIEvKg 11 (62)
T Q8TZ84_METKA/2 2 VEPDYVEVKA 11 (62)
T ss_pred CCCCEEEEee
No 235
>6Y3P_A KLLA0B12012p; ATP-grasp, LIGASE; HET: SO4; 2.3A {Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)}
Probab=33.87 E-value=1.4e+02 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred EEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g 57 (68)
..+||+..+ +|+++++|+-..
T Consensus 329 ~g~D~~id~-~~~p~llEvN~~ 349 (402)
T 6Y3P_A 329 FGFDFLVDS-DYQVKLLEVNAF 349 (402)
T ss_dssp EEEEEEEBT-TSCEEEEEEESS
T ss_pred EEEEEEEcC-CCCEEEEEEeCC
No 236
>7UK6_A Putative acid--amine ligase YjfC; Ligase, ATP-grasp; HET: SO4; 1.9A {Escherichia coli K-12}
Probab=33.77 E-value=1e+02 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred EEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.|+|++--. +|++.++|+-.+ ..++
T Consensus 107 ~R~D~~~~~-~g~~kiiE~N~~~p~g~ 132 (394)
T 7UK6_A 107 GRMDFAWCG-NAPVKLLEYNADTPTSL 132 (394)
T ss_dssp EEEEEECCT-TSCCEEEEEECSSCCCH
T ss_pred eeeEEEEcC-CCCcEEEEEeCCCCchH
No 237
>6CKY_B Glyoxalase; resistance, ANTITOXIN; 1.8A {Streptomyces uncialis}
Probab=33.70 E-value=1.8e+02 Score=17.75 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|.+.|..++..-.. .+... -+..+||+|++.-+
T Consensus 111 ~~~~~~~l~~~g~~~~~~~~~---~~~g~--~~~~~dp~G~~~el 150 (155)
T 6CKY_B 111 TRATYERLRQAGVTFVQEPVK---RPFGT--EAVFRDDSGNWFSL 150 (155)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE---CSSSE--EEEEECTTSCEEEE
T ss_pred HHHHHHHHHHCCCeeccCCcc---cCCce--EEEEECCCCCEEEE
No 238
>6HLW_D Genome polyprotein; complex, Golgi, enterovirus, picornavirus, VIRAL PROTEIN; 2.728A {Homo sapiens}
Probab=33.68 E-value=55 Score=18.76 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=0.0 Template_Neff=5.400
Q ss_pred HHHHHHHHHCCCeEEEEEEE-Ee
Q FD01543185_039 9 IKAKADLKKNGFTVVAEEVT-MK 30 (68)
Q Consensus 9 ~~a~~~l~~~G~~iv~~eVt-i~ 30 (68)
...++|++++|| |+..+++ ++
T Consensus 22 ~~Vi~yc~~~Gw-Iip~~~~~~e 43 (48)
T 6HLW_D 22 EEVRQYCREQGW-IIPETPTNVE 43 (48)
T ss_dssp HHHHHHHHHTTS-SEECCCSEEE
T ss_pred HHHHHHHHHcCC-cccCCCceee
No 239
>PF02786.21 ; CPSase_L_D2 ; Carbamoyl-phosphate synthase L chain, ATP binding domain
Probab=33.64 E-value=1.8e+02 Score=17.72 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred hHHHHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 5 RRGVIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
..-.+.+...++..|+ .|.- .+|++....+|.++++|+-.. +..+
T Consensus 135 ~~~~~~~~~~~~~l~~-----------~~~~-~~d~~~~~~~~~~~~iEin~r~~~~~ 180 (207)
T CARY_BACSU/128 135 QMLRTASLTIISALDV-----------VGGC-NIQFALDPFSKQYYVIEVNPRVSRSS 180 (207)
T ss_pred HHHHHHHHHHHHHcCC-----------cccE-EEEEEEeCCCCeEEEEEEeCCCCCcH
No 240
>1PK8_E rat synapsin I; ATP binding, ATP grasp, calcium (II) ion, MEMBRANE PROTEIN; HET: ATP; 2.1A {Rattus norvegicus} SCOP: c.30.1.5, d.142.1.3
Probab=33.63 E-value=1.1e+02 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred EEEEEEEECCCCCEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEV 54 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~Ev 54 (68)
..+|++.-+ +|+++++|+
T Consensus 371 ~~vD~i~~~-dg~~~iiEv 388 (422)
T 1PK8_E 371 CAVEALHGK-DGRDHIIEV 388 (422)
T ss_dssp EEEEEEEET-TSCEEEEEE
T ss_pred EEEEEEECC-CCCEEEEEE
No 241
>7WTE_C Pyruvate carboxylase, mitochondrial; pyruvate carboxylase, ONCOPROTEIN; HET: ATP, ACO; 3.3A {Homo sapiens}
Probab=33.22 E-value=2.6e+02 Score=24.95 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
.+.+.+.++..|| .| ...+||+..+ +|+++|+|+-.+ ...++
T Consensus 292 ~~~a~~i~~~lg~-----------~g-~~~vDfiv~~-~G~~~~IEvN~R~~~~~~ 334 (1178)
T 7WTE_C 292 TSDSVKLAKQVGY-----------EN-AGTVEFLVDR-HGKHYFIEVNSRLQVEHT 334 (1178)
T ss_dssp HHHHHHHHHHHTC-----------CS-SEEEECCBCS-SCCCCBCCEECSCCTTHH
T ss_pred HHHHHHHHHHhCC-----------CC-ceEeEEEEcC-CCcEEEEEEeCCCCCchh
No 242
>6UT7_N McrBC 5-methylcytosine restriction system component; Endonuclease, AAA protein, GTPase, Methylation-dependent restriction, DNA BINDING PROTEIN; HET: GDP, GSP, MG;{Thermococcus gammatolerans}
Probab=33.14 E-value=87 Score=24.27 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEEEEEECCCCCEEEEEEE
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVK 55 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK 55 (68)
.++|||..++++.+.++++|
T Consensus 337 ~~PDivi~~~~~~~~ViDaK 356 (458)
T 6UT7_N 337 QKPDYVVRKGNTPVVVLDAK 356 (458)
T ss_dssp BCCSEEEESTTSCCEEECCC
T ss_pred eeCeEEEEeCCccEEEEEeC
No 243
>6G3B_B Type II site-specific deoxyribonuclease; RESTRICTION ENDONUCLEASE, SCANNING COMPLEX, RNA/DNA HYBRID, RNA/DNA HETERODUPLEX, A-DNA, HYDROLASE; 1.8A {Nostoc sp. PCC 7120}
Probab=33.10 E-value=3.3e+02 Score=20.86 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred hhHHHHHHHHHHHHCCCe-EEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CC
Q FD01543185_039 4 GRRGVIKAKADLKKNGFT-VVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KG 59 (68)
Q Consensus 4 G~~Ge~~a~~~l~~~G~~-iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a 59 (68)
|..=|+.....|+..|+- .-|.-|+ -+||+-.+++|...++-|||+ ..
T Consensus 119 G~LLEeYLa~~le~~GWiWC~G~~vk--------AVDF~~~~~~~~w~lLQVKNr~NT 168 (238)
T 6G3B_B 119 GDLLERYIAEVIEPHGWIWCSGSMVR--------AVDFIYCDSENVWQSLQVKNRDNT 168 (238)
T ss_dssp HHHHHHHHHHHHGGGTCEECCTTSBS--------SCCEEEECTTSCEEEEEEEEESCS
T ss_pred HHHHHHHHHHHccccCeEEecCceeE--------eeeeeeeCCCCcEEEEEeecCCCC
No 244
>3U9T_A Methylcrotonyl-CoA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, bt domain, bccp domain, LIGASE; 2.9A {Pseudomonas aeruginosa}
Probab=33.06 E-value=3.6e+02 Score=21.64 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRL 61 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~l 61 (68)
.+.+.+.++..|| .| -..+||+... +|+++|+|+-.+ ....
T Consensus 262 ~~~a~~~~~~lg~-----------~g-~~~vd~~~~~-~g~~~~lEiN~R~~~~~ 303 (655)
T 3U9T_A 262 GEAAVRAAQAIGY-----------VG-AGTVEFLLDE-RGQFFFMEMNTRLQVEH 303 (655)
T ss_dssp HHHHHHHHHHTTC-----------CS-EEEEECCBCT-TSCBCBCEEESSCCTTH
T ss_pred HHHHHHHHHHhCC-----------Cc-ceeeEEEECC-CCCEEEEEEecCCccCC
No 245
>6MRR_A Foldit1; De novo protein, Foldit; 1.18A {synthetic construct}
Probab=32.90 E-value=1.1e+02 Score=18.83 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred hHHHHHHHHHHHHCCCeE
Q FD01543185_039 5 RRGVIKAKADLKKNGFTV 22 (68)
Q Consensus 5 ~~Ge~~a~~~l~~~G~~i 22 (68)
+++.+..++.|++.||++
T Consensus 46 krfleelrqklekkgytv 63 (68)
T 6MRR_A 46 KRFLEELRQKLEKKGYTV 63 (68)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCcee
No 246
>1SS4_B Glyoxalase family protein; Structural Genomics, Glyoxalase, Bacillus cereus, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown; HET: GSH, FMT, CIT, MSE; 1.84A {Bacillus cereus} SCOP: d.32.1.6
Probab=32.89 E-value=1.7e+02 Score=17.21 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|.+.|..++..-....-......+ .||+|++.-+
T Consensus 106 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~----~dp~G~~~~l 146 (153)
T 1SS4_B 106 IDEMVSRLTKHGAELVGEVVQYENSYRLCYI----RGVEGILIGL 146 (153)
T ss_dssp HHHHHHHHHHTTCEESSCCEEETTTEEEEEE----ECGGGCEEEE
T ss_pred HHHHHHHHHHCCCEEecceeecCCceEEEEE----ECCCccEEEE
No 247
>8EVY_B D-alanine--D-alanine ligase B; ATP-grasp, LIGASE, LIGASE-PRODUCT complex; HET: DAL, ATP; 2.35A {Pseudomonas aeruginosa}
Probab=32.82 E-value=2.4e+02 Score=18.96 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEEEEEcC-CCCCC
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVFEVKNG-KGRLT 62 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~EvK~g-~a~lT 62 (68)
.+.+.+.++..|+ .| -..+|++-.+ +|+++++|+-.. .....
T Consensus 248 ~~~~~~~~~~lg~-----------~g-~~~~d~~~~~-~g~~~~iEiN~r~~~~~~ 290 (320)
T 8EVY_B 248 KELTARACDALGI-----------QG-WGRADVMQDA-EGRFWLLEVNTAPGMTDH 290 (320)
T ss_dssp HHHHHHHHHHHTC-----------CS-EEEEEEEECT-TSCEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHHhCC-----------Cc-EEEEEEEEcC-CCCEEEEEEeCCCCCCCC
No 248
>3MJF_A Phosphoribosylamine--glycine ligase; structural genomics, phosphoribosylamine-glycine ligase, Center for Structural Genomics of Infectious Diseases, CSGID, LIGASE; HET: SO4, GOL, PGE, MSE; 1.47A {Yersinia pestis} SCOP: c.30.1.0, d.142.1.2, b.84.2.0, l.1.1.1
Probab=32.54 E-value=1.4e+02 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred EEEEEEEECCCCCEEEEEEEcC
Q FD01543185_039 36 IRADIVAKDANGNYHVFEVKNG 57 (68)
Q Consensus 36 ~r~Diva~d~~G~i~~~EvK~g 57 (68)
..+||+..+ +|+++|+|+-.+
T Consensus 273 ~~vd~~~~~-~g~~~~iEiN~r 293 (431)
T 3MJF_A 273 LYAGLMISA-DGQPKVIEFNCR 293 (431)
T ss_dssp EEEEEEECT-TSCEEEEEECGG
T ss_pred EEeeEEEcC-CCCeeEEEEEcC
No 249
>7VQ6_B Lactoylglutathione lyase; glyoxalase, LYASE; 1.39A {Gossypium hirsutum}
Probab=32.45 E-value=2e+02 Score=17.74 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=0.0 Template_Neff=12.200
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|+.+......-. +..+||+|.+.-+
T Consensus 144 ~~~~~~~l~~~g~~~~~~~~~~~---------~~~~dp~G~~i~~ 179 (192)
T 7VQ6_B 144 MYKACERFESLGVEFVKKPSDGY---------TFIKDPDGYWIEI 179 (192)
T ss_dssp HHHHHHHHHHTTCCBC----------------CEEECTTCCEEEE
T ss_pred HHHHHHHHHHcCCEEEecCCCCc---------eEEECCCCCEEEE
No 250
>1MPY_B CATECHOL 2,3-DIOXYGENASE; CATECHOL 2, 3-DIOXYGENASE, EXTRADIOL DIOXYGENASE, NON HEME IRON DIOXYGENASE, METAPYROCATECHASE, OXIDOREDUCTASE; HET: ACN; 2.8A {Pseudomonas putida} SCOP: d.32.1.3
Probab=32.13 E-value=2.6e+02 Score=19.31 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCEEEEEEEEEECCCCCEEEE
Q FD01543185_039 8 VIKAKADLKKNGFTVVAEEVTMKVNGKRIRADIVAKDANGNYHVF 52 (68)
Q Consensus 8 e~~a~~~l~~~G~~iv~~eVti~~~G~r~r~Diva~d~~G~i~~~ 52 (68)
.+.+.+.|++.|..+..........+.+. +..+||+|.+..+
T Consensus 225 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~---~~~~Dp~G~~i~l 266 (307)
T 1MPY_B 225 LLRAADLISMTDTSIDIGPTRHGLTHGKT---IYFFDPSGNRNEV 266 (307)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSTTCEE---EEEECTTSCEEEE
T ss_pred HHHHHHHHHhcCCeeeeCCCCCCCCCceE---EEEECCCCCEEEE