Query FD01872540_02612 Rhs family protein
Match_columns 82
No_of_seqs 36 out of 38
Neff 4.16339
Searched_HMMs 86581
Date Mon Feb 26 20:45:26 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6171477.hhr -oa3m ../results/6171477.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2LWF_A Monothiol glutaredoxin- 97.7 0.00064 7.4E-09 44.9 8.1 58 1-59 28-87 (119)
2 1YWL_A Hypothetical UPF0213 pr 97.7 0.00054 6.3E-09 41.5 6.6 29 1-31 9-37 (96)
3 1ZG2_A Hypothetical UPF0213 pr 97.4 0.0021 2.4E-08 40.8 6.7 54 1-57 10-71 (107)
4 1YD6_B UvrC; DNA BINDING PROTE 97.3 0.0084 9.7E-08 35.2 8.1 73 1-77 18-99 (99)
5 PF01541.28 ; GIY-YIG ; GIY-YIG 97.3 0.0021 2.5E-08 35.1 5.2 59 1-59 4-80 (89)
6 1MK0_A Intron-associated endon 97.2 0.012 1.4E-07 33.7 8.0 74 1-76 5-97 (97)
7 1YD0_A UvrABC system protein C 97.1 0.01 1.2E-07 34.9 7.1 66 1-68 18-90 (96)
8 2WSH_C ENDONUCLEASE II; GIY-YI 96.1 0.061 7.1E-07 36.3 6.3 57 1-59 43-130 (143)
9 PF20815.1 ; GIY_YIG_2 ; GIY-YI 96.0 0.09 1E-06 35.2 6.9 64 1-67 2-120 (137)
10 7WME_A Structure-specific endo 95.6 0.13 1.5E-06 36.5 6.6 56 1-57 30-98 (183)
11 PF19239.3 ; GIY_YIG_domain ; G 95.2 0.26 3E-06 33.1 6.6 69 1-74 39-133 (137)
12 4XLG_A Structure-specific endo 94.0 0.65 7.5E-06 35.7 7.1 56 1-57 13-82 (312)
13 PF10544.13 ; T5orf172 ; T5orf1 93.7 0.52 6E-06 28.0 5.0 58 1-59 3-63 (92)
14 PF09517.14 ; RE_Eco29kI ; Eco2 93.5 0.55 6.4E-06 34.3 5.8 60 1-60 8-108 (168)
15 6SEI_A Structure-specific endo 92.5 1.5 1.8E-05 34.0 7.2 56 1-57 14-82 (324)
16 7CQ3_A Structure-specific endo 90.8 2.7 3.1E-05 32.3 6.9 56 1-57 16-85 (304)
17 3MX1_A Eco29kIR; type II restr 89.9 1.6 1.8E-05 34.0 5.1 59 1-59 69-168 (235)
18 PF13455.10 ; MUG113 ; Meiotica 88.2 3.6 4.1E-05 23.5 4.6 41 14-59 3-44 (76)
19 PF19835.3 ; SegE_GIY-YIG ; Put 86.0 5.3 6.1E-05 26.4 5.1 58 1-59 20-102 (123)
20 PF15653.10 ; Tox-URI2 ; URI fo 83.5 8.6 9.9E-05 24.1 5.0 55 1-59 10-64 (71)
21 3OQG_A Hpy188I; ENDONUCLEASE-D 79.6 4.3 5E-05 30.2 3.1 27 1-28 72-98 (180)
22 PF10977.12 ; DUF2797 ; Protein 66.6 19 0.00022 27.4 3.8 49 1-57 73-122 (234)
23 3FKF_D thiol-disulfide oxidore 61.2 33 0.00038 20.5 3.5 31 2-32 118-148 (148)
24 PF20029.3 ; DUF6436 ; Domain o 60.6 13 0.00015 21.3 1.6 12 4-15 8-19 (59)
25 3EWL_A uncharacterized conserv 53.5 24 0.00027 21.0 2.0 30 2-31 113-142 (142)
26 4GRF_A Putative thiol-disulfid 49.8 85 0.00098 18.8 4.0 34 2-35 113-146 (152)
27 PF12744.11 ; ATG19 ; Autophagy 44.9 39 0.00045 27.6 2.5 22 1-22 164-185 (258)
28 3FW2_C thiol-disulfide oxidore 41.5 58 0.00067 19.6 2.4 28 2-29 120-147 (150)
29 2GW6_A tRNA-splicing endonucle 40.3 53 0.00061 22.4 2.3 15 4-18 109-123 (123)
30 2KZK_A Uncharacterized protein 38.9 63 0.00072 23.2 2.5 15 3-17 81-95 (107)
31 2KZB_A Autophagy-related prote 38.3 64 0.00074 23.6 2.5 15 3-17 87-101 (118)
32 PF18197.5 ; TTHB210-like ; Hyp 34.9 64 0.00074 18.9 1.8 12 6-17 1-12 (48)
33 5ENU_B Alkyl hydroperoxide red 30.4 1.6E+02 0.0019 18.2 3.2 28 2-29 129-158 (161)
34 3HCZ_A Possible thiol-disulfid 30.0 2E+02 0.0023 17.1 3.4 26 2-27 115-140 (148)
35 PF09919.13 ; DUF2149 ; Unchara 29.5 65 0.00075 22.2 1.4 12 1-14 80-91 (93)
36 PF20033.3 ; DUF6438 ; Domain o 29.1 67 0.00077 18.6 1.2 12 5-16 19-30 (76)
37 2LRT_A Uncharacterized protein 28.6 72 0.00083 19.9 1.4 22 2-23 117-138 (152)
38 PF13167.10 ; GTP-bdg_N ; GTP-b 27.6 1.8E+02 0.0021 18.5 3.1 21 37-57 53-73 (91)
39 5IMF_A Bacterioferritin comigr 27.0 2.2E+02 0.0025 17.2 3.2 28 2-29 125-154 (160)
40 PF11633.12 ; bCoV_SUD_M ; Beta 26.3 3.7E+02 0.0043 20.8 4.9 46 8-53 67-115 (143)
41 2B1L_B Thiol:disulfide interch 26.2 2.2E+02 0.0026 16.4 3.3 22 2-23 90-111 (129)
42 7XC3_B Papain-like protease ns 25.8 2.7E+02 0.0032 21.0 4.0 46 8-53 53-101 (127)
43 7XC4_B Papain-like protease ns 25.5 2.8E+02 0.0032 21.1 4.0 46 8-53 53-101 (129)
44 4EVM_A Thioredoxin family prot 25.3 2.2E+02 0.0025 16.2 2.9 22 2-23 108-129 (138)
45 4FO5_A thioredoxin-like protei 25.1 1.3E+02 0.0015 18.3 2.0 26 2-27 117-142 (143)
46 3EUR_A uncharacterized protein 24.9 81 0.00094 19.0 1.1 26 2-27 117-142 (142)
47 2B7K_C SCO1 protein; Metalloch 24.6 3.1E+02 0.0036 17.5 3.8 26 2-27 148-173 (200)
48 2KQV_A Non-structural protein 24.4 3.9E+02 0.0046 21.6 4.9 46 8-53 53-101 (198)
49 4WBJ_A Blr1131 protein; copper 23.5 2.8E+02 0.0032 16.6 3.3 22 2-23 134-155 (164)
50 4WBJ_B Blr1131 protein; copper 23.5 2.8E+02 0.0032 16.6 3.3 22 2-23 134-155 (164)
51 6VPD_A Glutathione peroxidase; 22.9 2E+02 0.0024 18.0 2.6 32 2-33 157-191 (192)
52 2B5Y_A YkuV protein; Thioredox 22.8 2.8E+02 0.0033 16.4 3.2 22 2-23 114-135 (148)
53 3DRN_B Peroxiredoxin, bacterio 22.6 2.4E+02 0.0028 17.4 2.9 26 2-27 114-139 (161)
54 2YZH_B Probable thiol peroxida 22.1 3.4E+02 0.0039 17.8 3.6 28 2-29 136-167 (171)
55 3F9U_B Putative exported cytoc 22.0 3.2E+02 0.0037 16.8 3.4 28 2-29 134-161 (172)
56 PF08534.14 ; Redoxin ; Redoxin 21.3 3E+02 0.0034 16.1 3.9 27 2-29 109-135 (135)
57 2FY6_A Peptide methionine sulf 21.1 3E+02 0.0035 16.1 3.4 22 2-23 110-131 (143)
58 PF08789.14 ; PBCV_basic_adap ; 21.1 1.2E+02 0.0014 17.8 1.2 11 5-15 3-13 (37)
59 2H30_A Peptide methionine sulf 20.9 3.3E+02 0.0039 16.5 3.4 22 2-23 125-146 (164)
No 1
>2LWF_A Monothiol glutaredoxin-S16, chloroplastic; Nuclease, Glutaredoxin, HYDROLASE; NMR {Arabidopsis thaliana}
Probab=97.74 E-value=0.00064 Score=44.91 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=43.9 Template_Neff=8.900
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcC-CCcccceEEe-cCCCCHHHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGD-GRVFSKVRYV-DDLGSRVNARNIEGSILD 59 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~-gk~F~~~~vi-~~~lsr~qAR~iEgs~I~ 59 (82)
||.+.|.+|+++|+|.| ++...|+.+|+.. .+....+++. .+..++.+...+|..+|.
T Consensus 28 VY~i~d~~~~~lYIG~s-~nLr~rl~~h~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 87 (119)
T 2LWF_A 28 VYAVYDKSDELQFVGIS-RNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIE 87 (119)
T ss_dssp EEEEECTTCCEEEEEEE-SCHHHHHHHHHHHSGGGCSEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEEEe-ccHHHHHHHHHhcChhhcceEEEEEecCCCHHHHHHHHHHHHH
Confidence 79999999999999999 8999999999933 2223334443 234577788888888887
No 2
>1YWL_A Hypothetical UPF0213 protein EF2693; Alpha and beta, Structural Genomics, Northeast Structural Genomics Consortium (NESG), Protein Structure Initiative (PSI), UNKNOWN FUNCTION; NMR {Enterococcus faecalis}
Probab=97.68 E-value=0.00054 Score=41.47 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=24.9 Template_Neff=10.600
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcC
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGD 31 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~ 31 (82)
||.+.+. ...+|||.| .+|..|+.+|...
T Consensus 9 vY~l~~~-~~~~yiG~t-~~l~~r~~~h~~~ 37 (96)
T 1YWL_A 9 FYVLLCQ-DGSFYGGYT-TEPERRLTEHNSG 37 (96)
T ss_dssp EEEEECT-TCCCEEEEE-SCHHHHHHHHHHH
T ss_pred EEEEEeC-CCCEEEEEc-CCHHHHHHHHHcC
Confidence 6888875 567899999 9999999999865
No 3
>1ZG2_A Hypothetical UPF0213 protein BH0048; BhR2, Autostructure, Northeast Structural Genomics Consortium, PSI, Protein Structure Initiative, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; NMR {Bacillus halodurans}
Probab=97.39 E-value=0.0021 Score=40.85 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcCCC--------cccceEEecCCCCHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGDGR--------VFSKVRYVDDLGSRVNARNIEGSI 57 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~gk--------~F~~~~vi~~~lsr~qAR~iEgs~ 57 (82)
||-+.+. +..+|.|+|. ++..|+.+| ..+. ....+.++....++.+|...|..+
T Consensus 10 vYil~~~-~~~~YiG~T~-~l~~R~~~h-~~~~~~~~t~~~~~~~lv~~~~~~~~~~A~~~E~~~ 71 (107)
T 1ZG2_A 10 VYILECK-DGSWYTGYTT-DVDRRIKKH-ASGKGAKYTRGRGPFRLVATWAFPSKEEAMRWEYEV 71 (107)
T ss_dssp EEEEECT-TSCEEEEEEC-CHHHHHHHH-HHHTTCCSCCCCSSCEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEEeC-CCeEEEEEeC-CHHHHHHHH-HCCCCccccccCCCeEEEEEEEcCCHHHHHHHHHHH
No 4
>1YD6_B UvrC; DNA BINDING PROTEIN; HET: SO4; 2.0A {Bacillus caldotenax}
Probab=97.30 E-value=0.0084 Score=35.19 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcCC---------CcccceEEecCCCCHHHHHHHHHHHHHhccCCccccccc
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGDG---------RVFSKVRYVDDLGSRVNARNIEGSILDHAKGDPNIENAI 71 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~g---------k~F~~~~vi~~~lsr~qAR~iEgs~I~~~~g~~n~~Nsi 71 (82)
||.+.+..++++|+|.|. +...|+.+|.... .....+.+. ...+...|..+|..+|...+...|.....
T Consensus 18 vy~~~~~~~~~~yvG~t~-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~li~~~~p~~n~~~~~ 95 (99)
T 1YD6_B 18 CYLMKDKHGTVIYVGKAK-SLKERVRSYFTGTHDGKTQRLVEEIADFEYI-VTSSNAEALILEMNLIKKHDPKYNVMLKD 95 (99)
T ss_dssp EEEEECTTSCEEEEEEES-SHHHHHHHTTSSCCCHHHHHHHHHCCEEEEE-ECSSHHHHHHHHHHHHHHHCCHHHHHTCC
T ss_pred EEEEECCCCcEEEEEecc-cHHHHHHHhccCCCCchHHHHHHhceeEEEE-EcCCHHHHHHHHHHHHHHhCCcccccccC
Q ss_pred ccCCCc
Q FD01872540_026 72 RKDGGF 77 (82)
Q Consensus 72 r~~~~y 77 (82)
.. .|
T Consensus 96 ~~--~~ 99 (99)
T 1YD6_B 96 DK--SY 99 (99)
T ss_dssp ------
T ss_pred CC--CC
No 5
>PF01541.28 ; GIY-YIG ; GIY-YIG catalytic domain
Probab=97.29 E-value=0.0021 Score=35.09 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcCC----------------CcccceEEecCCCCHHHH--HHHHHHHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGDG----------------RVFSKVRYVDDLGSRVNA--RNIEGSILD 59 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~g----------------k~F~~~~vi~~~lsr~qA--R~iEgs~I~ 59 (82)
||.+.+..+..+|+|.|.+....|+.+|..+. .....+.++....+..++ ...|..++.
T Consensus 4 vy~~~~~~~~~~yig~t~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (89)
T VF019_IIV6/3-9 4 IYAIENNLNDEVYIGSTLRTIEERFSEHKASARRRPTCTFHKFMSLHGIEHFKIIELKKIEVNSFFELQALEESYIR 80 (89)
T ss_pred EEEEEeCCCCcEEEEeeCCCHHHHHHHHHHHhccCCCCchHHHHHHhCcCCeEEEEEEEeccCChHHHHHHHHHHHH
No 6
>1MK0_A Intron-associated endonuclease 1; alpha/beta fold CATALYTIC DOMAIN DNA-BINDING SURFACE, HYDROLASE; HET: CIT; 1.6A {Enterobacteria phage T4} SCOP: d.226.1.1
Probab=97.21 E-value=0.012 Score=33.72 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhh---cCCC--------------cccceEEec-CCCCHHHHHHHHHHHHHhcc
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHA---GDGR--------------VFSKVRYVD-DLGSRVNARNIEGSILDHAK 62 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~---~~gk--------------~F~~~~vi~-~~lsr~qAR~iEgs~I~~~~ 62 (82)
||.+.+.....+|.|-| ++...|+.+|. ..+. ....+.++. ...+..+++.+|..+|...
T Consensus 5 vy~~~~~~~~~~yiG~t-~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~- 82 (97)
T 1MK0_A 5 IYQIKNTLNNKVYVGSA-KDFEKRWKRHFKDLEKGCHSSIKLQRSFNKHGNVFECSILEEIPYEKDLIIERANFWIKEL- 82 (97)
T ss_dssp EEEEEETTTCCEEEEEE-SSHHHHHHHHHHHHHHTCCSCHHHHHHHHHHSSCEEEEEEEECCCCHHHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCeEEEEee-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCcEEEEEEEeecCCHHHHHHHHHHHHHHh-
Q ss_pred CCccc-ccccccCCC
Q FD01872540_026 63 GDPNI-ENAIRKDGG 76 (82)
Q Consensus 63 g~~n~-~Nsir~~~~ 76 (82)
..... .|.+...++
T Consensus 83 ~~~~~~~n~~~~~~~ 97 (97)
T 1MK0_A 83 NSKINGYNIADATFG 97 (97)
T ss_dssp TTTTSSSCCSSCCCC
T ss_pred hccccCccccCCCCC
No 7
>1YD0_A UvrABC system protein C; DNA BINDING PROTEIN; 1.5A {Thermotoga maritima}
Probab=97.11 E-value=0.01 Score=34.94 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcCCC-------cccceEEecCCCCHHHHHHHHHHHHHhccCCcccc
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGDGR-------VFSKVRYVDDLGSRVNARNIEGSILDHAKGDPNIE 68 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~gk-------~F~~~~vi~~~lsr~qAR~iEgs~I~~~~g~~n~~ 68 (82)
||.+.+ .++++|.|.| .+...|+.+|..+.. .....-.+....+...|..+|..+|.......|..
T Consensus 18 vy~i~~-~~~~~YiG~s-~~l~~rl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~li~~~~p~~n~~ 90 (96)
T 1YD0_A 18 VYIFKN-KGVPIYIGKA-KRLSNRLRSYLNPQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNVR 90 (96)
T ss_dssp EEEEEE-TTEEEEEEEE-SSHHHHHHGGGSCSSHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHHHCCTTCC-
T ss_pred EEEEee-CCeEEEEEec-hhHHHHHHHhhCCCcHHHHHHhhhccEEEEEEeCCHHHHHHHHHHHHHHhCCCcccC
No 8
>2WSH_C ENDONUCLEASE II; GIY-YIG, NUCLEASE, HYDROLASE; HET: PEG, MSE; 1.9A {ENTEROBACTERIA PHAGE T4}
Probab=96.06 E-value=0.061 Score=36.28 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcCCC---------------------cccceEEecCC----------CCHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGDGR---------------------VFSKVRYVDDL----------GSRVN 49 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~gk---------------------~F~~~~vi~~~----------lsr~q 49 (82)
||.+.+ +++++|+|-| ++...|+.+|..... ..-.+.++... ++-.+
T Consensus 43 vY~~~~-~~~ilYIG~t-~~l~~Rl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 120 (143)
T 2WSH_C 43 IYAIAI-NDELVYIGKT-KNLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGSKVEFYARQCFNLSMTNELGTMTIAT 120 (143)
T ss_dssp EEEEEE-TTEEEEEEEE-SCHHHHHHHHHHGGGC-----CCHHHHHHHHHHHTTCCEEEEEEECCEEEEEETTEEEEEEH
T ss_pred EEEEEE-CCEEEEEEec-CCHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHCCCeEEEEEEecCCcccccccccccchh
Q ss_pred HHHHHHHHHH
Q FD01872540_026 50 ARNIEGSILD 59 (82)
Q Consensus 50 AR~iEgs~I~ 59 (82)
+..+|..+|.
T Consensus 121 ~~~~E~~li~ 130 (143)
T 2WSH_C 121 IDLEAPLFIK 130 (143)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 9
>PF20815.1 ; GIY_YIG_2 ; GIY-YIG catalytic domain
Probab=96.04 E-value=0.09 Score=35.24 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CeEEeCCCCC-------------------EEEEEecCCCHHHHHHHhhcCC-----------------------------
Q FD01872540_026 1 FYQLINSSGD-------------------VIYHGITDRTVQERVIEHAGDG----------------------------- 32 (82)
Q Consensus 1 vYql~d~~G~-------------------vvY~GIT~r~~~~R~~EH~~~g----------------------------- 32 (82)
||.....++. ++|+|.| ++...|+.+|....
T Consensus 2 vY~~~~~~~~~~~~~~~~~~~~~~~~~~~~lYVG~a-~nL~~Rl~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T A0A2D3WMF1_9PR 2 VYKWYMPQTLVDLLNVPMDGCEYKDGFGYFVYVGIA-KNMRQRLDWHISQKHSKSSVKSGFLSTFRQTLCGLAKVPMDDE 80 (137)
T ss_pred ceEEecCHHHHHhccCCCCCccccCCCCceEEEEeC-ccHHHHHHHHhhcCCccchhcccccchHHHHHHHHhCCCCCCh
Q ss_pred -------CcccceEEecCCCCHHHHHHHHHHHHHhccCCccc
Q FD01872540_026 33 -------RVFSKVRYVDDLGSRVNARNIEGSILDHAKGDPNI 67 (82)
Q Consensus 33 -------k~F~~~~vi~~~lsr~qAR~iEgs~I~~~~g~~n~ 67 (82)
+ ...+.++... +..+|..+|..+|...+...|.
T Consensus 81 ~~~~~~~~-~~~i~~~~~~-~~~~~~~~E~~li~~~~P~~N~ 120 (137)
T A0A2D3WMF1_9PR 81 DTVNTIID-QMSIEFSLCT-SKDEAESIEKEIIHSSTLPLNI 120 (137)
T ss_pred HHHHHHHH-hceEEEEECC-ChHHHHHHHHHHHHHCCCCccc
No 10
>7WME_A Structure-specific endonuclease subunit SLX1 homolog; Resolvase Nuclease Structure-selective endonuclease, PLANT PROTEIN; 1.7A {Arabidopsis thaliana}
Probab=95.61 E-value=0.13 Score=36.55 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CeEEeCCC---CCEEEEEecCCCHHHHHHHhhcCCCcc---------cceEEec-CCCCHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSS---GDVIYHGITDRTVQERVIEHAGDGRVF---------SKVRYVD-DLGSRVNARNIEGSI 57 (82)
Q Consensus 1 vYql~d~~---G~vvY~GIT~r~~~~R~~EH~~~gk~F---------~~~~vi~-~~lsr~qAR~iEgs~ 57 (82)
||-+.+.+ ....|+|+| .++..|+.+|......- ..+.++. .-.+..+|...|..+
T Consensus 30 vYil~~~~~~~~~~~YvG~T-~dl~~Rl~~H~~~~~~ga~~t~~~~~~~lv~~~~~~~~~~~Al~~E~~~ 98 (183)
T 7WME_A 30 CYLLTSLSPRHKGQTYIGFT-VNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAW 98 (183)
T ss_dssp EEEEEECCGGGTTCEEEEEE-SCHHHHHHHHTTSSSSSCTTGGGGCCEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEECCcccCCcEEEEEc-CCHHHHHHHHhCCCCCCccccccCCCeEEEEEEEccCChhhHHHHHHHh
No 11
>PF19239.3 ; GIY_YIG_domain ; GIY-YIG domain-containing protein
Probab=95.15 E-value=0.26 Score=33.09 Aligned_cols=69 Identities=20% Similarity=0.147 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CeEEeCC--------------CCCEEEEEecCCCHHHHHHHhhcCCCccc------------ceEEecCCCCHHHHHHHH
Q FD01872540_026 1 FYQLINS--------------SGDVIYHGITDRTVQERVIEHAGDGRVFS------------KVRYVDDLGSRVNARNIE 54 (82)
Q Consensus 1 vYql~d~--------------~G~vvY~GIT~r~~~~R~~EH~~~gk~F~------------~~~vi~~~lsr~qAR~iE 54 (82)
||.+.+. ++.++|+|.| .+...|+.+|........ .+.+.... ++..+|
T Consensus 39 vY~~~~~~~~~~~~~~~~~~~~~~~lYIG~a-~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~e 113 (137)
T ET3_ARATH/69-2 39 LYELGVGVIGQDQGQNFDPDNNVLGVYVGQC-VDVKSRLQDYGRRGGHLPSGLYEDIFSEGYSVFYRWAP----EAAATE 113 (137)
T ss_pred EEEEEeecCCCCCCccCCCCCCeeeEEEEEe-CCHHHHHHHhcccCCcCcccHHHHHHhCCCeEEEEECh----hHHHHH
Q ss_pred HHHHHhccCCcccccccccC
Q FD01872540_026 55 GSILDHAKGDPNIENAIRKD 74 (82)
Q Consensus 55 gs~I~~~~g~~n~~Nsir~~ 74 (82)
..+|.......|......+.
T Consensus 114 ~~li~~~~p~~N~~~~~~~~ 133 (137)
T ET3_ARATH/69-2 114 GMLLSTFDYAWNTCSNGERR 133 (137)
T ss_pred HHHHHhcCchHhcccCCccc
No 12
>4XLG_A Structure-specific endonuclease subunit SLX1; nuclease, DNA repair, GIY-YIG, homogolous recombination, hydrolase; 1.78A {Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)}
Probab=93.97 E-value=0.65 Score=35.70 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CeEEeCCCC-CEEEEEecCCCHHHHHHHhhcCC------------CcccceEEe-cCCCCHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSSG-DVIYHGITDRTVQERVIEHAGDG------------RVFSKVRYV-DDLGSRVNARNIEGSI 57 (82)
Q Consensus 1 vYql~d~~G-~vvY~GIT~r~~~~R~~EH~~~g------------k~F~~~~vi-~~~lsr~qAR~iEgs~ 57 (82)
||-|..... .-.|.|.| .+|..|+.+|.+.- ...-.|.++ ..-.++.+|...|..+
T Consensus 13 ~Y~l~~~~~~~~~YiG~T-~d~~rR~~qHn~~~~~gga~~t~~~~~~p~~lv~~v~~f~s~~~Al~~E~~~ 82 (312)
T 4XLG_A 13 CYLLQSISKRQSFYIGST-PNPVRRLRQHNGSLSRGGAYRTKRDGTRPWEMVAIVYGFPSRIAALQFQHAW 82 (312)
T ss_dssp EEEEEESSSTTCEEEEEE-SCHHHHHHHHHSCSCC-----CCCCSCCSEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcEEEEEC-CCHHHHHHHHhCcCCCCCchhhccCCCCCceEEEEEecCCCHHHHHHHHHHH
No 13
>PF10544.13 ; T5orf172 ; T5orf172 domain
Probab=93.66 E-value=0.52 Score=27.96 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CeEEeCC-CCCEEEEEecCC-CHHHHHHHhh-cCCCcccceEEecCCCCHHHHHHHHHHHHH
Q FD01872540_026 1 FYQLINS-SGDVIYHGITDR-TVQERVIEHA-GDGRVFSKVRYVDDLGSRVNARNIEGSILD 59 (82)
Q Consensus 1 vYql~d~-~G~vvY~GIT~r-~~~~R~~EH~-~~gk~F~~~~vi~~~lsr~qAR~iEgs~I~ 59 (82)
||-+.++ .+..+-.|+|.+ .|..|+.++. ........+.++..-... .++.+|..+..
T Consensus 3 vYv~~~~~~~~~~KIG~t~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~i~~ 63 (92)
T A6LEZ1_PARD8/1 3 VYALTNPAMPGLVKIGMTSKLEIDQRKNQLYFGSSGVPLPFECVYACKVK-DFEKTEKALHI 63 (92)
T ss_pred EEEEeCCCCCCceEeeeccCCcHHHHHHHHhcCCCCCCCCcEEEEEEEeC-CHHHHHHHHHH
No 14
>PF09517.14 ; RE_Eco29kI ; Eco29kI restriction endonuclease
Probab=93.51 E-value=0.55 Score=34.30 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CeEEeCCC----------------CCEEEEEecC-----------------CCHHHHHHHhhcCCC-----cccceEEec
Q FD01872540_026 1 FYQLINSS----------------GDVIYHGITD-----------------RTVQERVIEHAGDGR-----VFSKVRYVD 42 (82)
Q Consensus 1 vYql~d~~----------------G~vvY~GIT~-----------------r~~~~R~~EH~~~gk-----~F~~~~vi~ 42 (82)
||.+.+.. ++++|+|=+. +....||.+|..+-. .-..+.+-.
T Consensus 8 VY~ly~~g~~~~y~~~~~~~~~~~~~piYVGkA~~~~~~~g~~~~~~~~~~~~L~~RL~~H~~si~~~~~l~~~d~~~r~ 87 (168)
T B0C6N6_ACAM1/5 8 VYALYCIAKSGIYSRFNSVNRTAFHIPIYVGKAVPKGWRQARQSSSSDTKSYELNNRIREHSRSIEIGEGVNSSDFFCRF 87 (168)
T ss_pred EEEEEEcCCccccccccccCcccCcccEEEEccCCcchhhcccCCCCccccCCHHHHHHHHHhcccccccCCccceEEEE
Q ss_pred CCCC---HHHHHHHHHHHHHh
Q FD01872540_026 43 DLGS---RVNARNIEGSILDH 60 (82)
Q Consensus 43 ~~ls---r~qAR~iEgs~I~~ 60 (82)
-.+. -.....+|..||.+
T Consensus 88 l~~~~~~~~~~~~~E~~LI~~ 108 (168)
T B0C6N6_ACAM1/5 88 MILEGKESDLIGTVEAALIRK 108 (168)
T ss_pred EEeCCCCChHHHHHHHHHHHH
No 15
>6SEI_A Structure-specific endonuclease subunit SLX1; Resolvase, Structure-Selective endonuclease, Endonuclease, DNA BINDING PROTEIN; 2.69A {Thielavia terrestris}
Probab=92.50 E-value=1.5 Score=33.99 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CeEEeCCC-CCEEEEEecCCCHHHHHHHhhcC-----------CCcccceEEec-CCCCHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSS-GDVIYHGITDRTVQERVIEHAGD-----------GRVFSKVRYVD-DLGSRVNARNIEGSI 57 (82)
Q Consensus 1 vYql~d~~-G~vvY~GIT~r~~~~R~~EH~~~-----------gk~F~~~~vi~-~~lsr~qAR~iEgs~ 57 (82)
||-|.... ..-.|+|+| .+|..|+.+|.+. ...--.|.++. .-.++.+|...|..+
T Consensus 14 ~Yll~~~~~~~~~YiG~T-~~~~rRl~qHn~~~~~ga~~T~~~~~~p~~lv~~~~~f~~~~~Al~~E~~~ 82 (324)
T 6SEI_A 14 VYVLRSTVRHASLYIGST-PNPPRRLKQHNGLVPGGAARTSRSSLRPWEMVALVSGFPSMVAALKFQWAL 82 (324)
T ss_dssp EEEEEESSCTTCEEEEEE-SCHHHHHHHHTTSSSCCCSGGGCTTTCSEEEEEEEECCSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCeEEEEEC-CCHHHHHHHHcCCCCCCccccccccCCCeEEEEEEecCCCHHHHHHHHHHH
No 16
>7CQ3_A Structure-specific endonuclease subunit SLX1; endonuclease complex, Holliday Junction, SLX1-SLX4, HYDROLASE; HET: SO4; 1.449A {Saccharomyces cerevisiae (strain YJM789)}
Probab=90.81 E-value=2.7 Score=32.31 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CeEEeCC-CCCEEEEEecCCCHHHHHHHhhcC-------------CCcccceEEecCCCCHHHHHHHHHHH
Q FD01872540_026 1 FYQLINS-SGDVIYHGITDRTVQERVIEHAGD-------------GRVFSKVRYVDDLGSRVNARNIEGSI 57 (82)
Q Consensus 1 vYql~d~-~G~vvY~GIT~r~~~~R~~EH~~~-------------gk~F~~~~vi~~~lsr~qAR~iEgs~ 57 (82)
||-+... ...-.|.|.| .+|..|+.+|.+. .+++.-+-++..-.++.+|...|..+
T Consensus 16 ~Yil~s~~~~~~~yiG~t-~~~~~R~~qHn~~~~~~ga~~T~~~~~~pw~lv~~~~~f~~~~~Al~~E~~~ 85 (304)
T 7CQ3_A 16 CYLLQSINKRQSFYVGST-PNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAW 85 (304)
T ss_dssp EEEEEESSCTTCEEEEEE-SCHHHHHHHHHSSSCTTCCGGGGSTTTCSEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcEEEEEC-CCHHHHHHHHhCccccCCccccccCCCCCEEEEEEEEccCCHHHHHHHHHHH
No 17
>3MX1_A Eco29kIR; type II restriction endonuclease, GIY-YIG endonuclease, HYDROLASE; 2.3A {Escherichia coli}
Probab=89.91 E-value=1.6 Score=33.96 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CeEEeCCC----------------CCEEEEEecC-----CC------------HHHHHHHhhcCCC-----cccceEEec
Q FD01872540_026 1 FYQLINSS----------------GDVIYHGITD-----RT------------VQERVIEHAGDGR-----VFSKVRYVD 42 (82)
Q Consensus 1 vYql~d~~----------------G~vvY~GIT~-----r~------------~~~R~~EH~~~gk-----~F~~~~vi~ 42 (82)
||++.-.. ..++|+|=+. +. ...||.+|..+-. ...++.+-.
T Consensus 69 VY~lyy~G~~~~Y~~~~~~~~~~~~~pIYVGKA~~~~~r~g~~~~~~~~~~~~L~~RL~~H~~~i~~~~~l~~~df~~r~ 148 (235)
T 3MX1_A 69 VYALYYTGHYSLYDEYSRINRLAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRF 148 (235)
T ss_dssp EEEEEECSCCGGGTTHHHHTSSSCCCCSEEEEECCTTTSCSSCSSCSSCCCSHHHHHHHHHHHHHHTCSSCCGGGEEEEE
T ss_pred eEEEEEeeCChhhchhhhhccccCCccEEEEccCCccccccccccccccccchHHHHHHHHhhhcccCCCcccceEEEEE
Q ss_pred CCCCHH---HHHHHHHHHHH
Q FD01872540_026 43 DLGSRV---NARNIEGSILD 59 (82)
Q Consensus 43 ~~lsr~---qAR~iEgs~I~ 59 (82)
-.+... ....+|..||.
T Consensus 149 l~~~~~~~~~i~~~E~~LI~ 168 (235)
T 3MX1_A 149 VIFEATGSDMISTVQAALIK 168 (235)
T ss_dssp EECCSGGGGGHHHHHHHHHH
T ss_pred EEeccCCchhHHHHHHHHHH
No 18
>PF13455.10 ; MUG113 ; Meiotically up-regulated gene 113
Probab=88.17 E-value=3.6 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred EEecCCCH-HHHHHHhhcCCCcccceEEecCCCCHHHHHHHHHHHHH
Q FD01872540_026 14 HGITDRTV-QERVIEHAGDGRVFSKVRYVDDLGSRVNARNIEGSILD 59 (82)
Q Consensus 14 ~GIT~r~~-~~R~~EH~~~gk~F~~~~vi~~~lsr~qAR~iEgs~I~ 59 (82)
.|+|. +| ..|+.++.. +.+|.-..+..-.. .|..+|..+..
T Consensus 3 IG~t~-~~~~~R~~~~~~-~~~~~~~~~~~~~~---~~~~~E~~i~~ 44 (76)
T YR009_MIMIV/23 3 IGIHT-GTLEDLISRYMT-YFPDLIVKYFQYTV---IAREVETNLKK 44 (76)
T ss_pred eeeeC-ChHHHHHHHHhh-cCCceEEEEEechH---HHHHHHHHHHH
No 19
>PF19835.3 ; SegE_GIY-YIG ; Putative endonuclease segE, GIY-YIG domain
Probab=86.01 E-value=5.3 Score=26.38 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CeEEeCCCCCEEEEEecC-----------------------CCHHHHHHHhh--cCCCcccceEEecCCCCHHHHHHHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITD-----------------------RTVQERVIEHA--GDGRVFSKVRYVDDLGSRVNARNIEG 55 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~-----------------------r~~~~R~~EH~--~~gk~F~~~~vi~~~lsr~qAR~iEg 55 (82)
||.+.+..-.-+|+|.|. ......|.+++ .+...| .+.++....+..++...|+
T Consensus 20 VY~i~~~~~~~~YIG~t~~~~~r~~~~~~r~~~h~~~~~~~~~~~~~l~~~~~~~g~~~f-~~~iLe~~~~~~~l~~~E~ 98 (123)
T A0A0K0KW02_9CA 20 VYRITNTTSSKSYIGRKYFVQKRKPRGGKRRVTSESDWKQYYGSSEELKQDIRSNGRDSF-RREIISLHRTLGKVNYEET 98 (123)
T ss_pred EEEEEECCCCcEEeeEEEEecccCCCCCceeeeeecchhhhcCCcHHHHHHHHHhCHHhc-eEEEEEEeCChHHHHHHHH
Q ss_pred HHHH
Q FD01872540_026 56 SILD 59 (82)
Q Consensus 56 s~I~ 59 (82)
.+|.
T Consensus 99 ~~i~ 102 (123)
T A0A0K0KW02_9CA 99 RQLF 102 (123)
T ss_pred HHHH
No 20
>PF15653.10 ; Tox-URI2 ; URI fold toxin 2
Probab=83.49 E-value=8.6 Score=24.14 Aligned_cols=55 Identities=11% Similarity=-0.025 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHhhcCCCcccceEEecCCCCHHHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEHAGDGRVFSKVRYVDDLGSRVNARNIEGSILD 59 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH~~~gk~F~~~~vi~~~lsr~qAR~iEgs~I~ 59 (82)
.|...|. |.|+=+|||...+...-...+... +..+++.+.++ +..|..+|...|.
T Consensus 10 ~y~i~~k-~~v~K~G~s~s~r~r~q~~~ln~~--~~~~~~~~~i~-r~~a~~~E~~~i~ 64 (71)
T G0L0M8_ZOBGA/7 10 GEMYLKK-GELWKLGETKNPKTRYTQKWLRKM--NLQKVTTHNGP-KKLMQMLEGMKLK 64 (71)
T ss_pred ceEEeec-CCeEEeeeCCCccchhhHHHHHHh--ccccceeeecc-HHHHHHHHHHHHH
No 21
>3OQG_A Hpy188I; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY188I, INTERCALATION, GIY-YIG NUCLEASE, CATALYTIC MECHANISM, PSEUDOPALINDROME, HYDROLASE-DNA COMPLEX; HET: MSE; 1.75A {Helicobacter pylori}
Probab=79.59 E-value=4.3 Score=30.21 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred CeEEeCCCCCEEEEEecCCCHHHHHHHh
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQERVIEH 28 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~~R~~EH 28 (82)
||..+-+ ++++|.|-|.+.-..|+..+
T Consensus 72 VYafvvd-~~IvYIG~t~~~L~~R~~~Y 98 (180)
T 3OQG_A 72 VYVFVIQ-GKIFKIGHSITPITKRVQSY 98 (180)
T ss_dssp EEEEEET-TEEEEEEEESSCHHHHHHHH
T ss_pred EEEEEEC-CEEEEEEEeCCcHHHHHHhh
No 22
>PF10977.12 ; DUF2797 ; Protein of unknown function (DUF2797)
Probab=66.60 E-value=19 Score=27.38 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred CeEEeCCCCCEEEEEecC-CCHHHHHHHhhcCCCcccceEEecCCCCHHHHHHHHHHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITD-RTVQERVIEHAGDGRVFSKVRYVDDLGSRVNARNIEGSI 57 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~-r~~~~R~~EH~~~gk~F~~~~vi~~~lsr~qAR~iEgs~ 57 (82)
||-. .+..+=+|||. .....||.|- ..+-..+|+...++.+||.||..+
T Consensus 73 vYLa---~~~~vKVGvt~~~R~~~R~~EQ-----GA~~a~~i~~~~~~~~Ar~lE~~i 122 (234)
T I1YK27_METFJ/3 73 VYLA---NSSGLKVGITRQTQVPTRWLDQ-----GATQALPIFRVQSRYQSGLVEVMF 122 (234)
T ss_pred EEEe---cCCCceEEeCCCcCCCChhhcc-----cccEEEEEEEeCCHHHHHHHHHHH
No 23
>3FKF_D thiol-disulfide oxidoreductase; thiol disulfide oxidoreductase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, OXIDOREDUCTASE; HET: ACT, MSE; 2.2A {Bacteroides fragilis}
Probab=61.15 E-value=33 Score=20.51 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHHhhcCC
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIEHAGDG 32 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~EH~~~g 32 (82)
+.++|++|++++.++........+.+.+...
T Consensus 118 ~~lid~~g~i~~~~~~~~~~~~~i~~~l~~~ 148 (148)
T 3FKF_D 118 NILLSPTGKILARDIQGEALTGKLKELLKTE 148 (148)
T ss_dssp EEEECTTSBEEEESCCHHHHHHHHHHHC---
T ss_pred EEEECCCCCEEEecCCchHHHHHHHHHHccC
No 24
>PF20029.3 ; DUF6436 ; Domain of unknown function (DUF6436)
Probab=60.64 E-value=13 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred EeCCCCCEEEEE
Q FD01872540_026 4 LINSSGDVIYHG 15 (82)
Q Consensus 4 l~d~~G~vvY~G 15 (82)
++|.+|+++|.|
T Consensus 8 vid~~~~l~Y~G 19 (59)
T Q88CL8_PSEPK/1 8 IWDRQGRLAYFG 19 (59)
T ss_pred EECCCCcEEEEC
No 25
>3EWL_A uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: MSE; 2.0A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=53.55 E-value=24 Score=20.96 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHHhhcC
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIEHAGD 31 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~EH~~~ 31 (82)
+.++|++|++++.+.+.......+.+.+..
T Consensus 113 ~~l~d~~g~v~~~~~~~~~~~~~l~~~~~~ 142 (142)
T 3EWL_A 113 IYLLDGRKRVILKDTSMEQLIDYLATQAGK 142 (142)
T ss_dssp EEEECTTCBEEECSCCHHHHHHHHHC----
T ss_pred EEEECCCCeEEEcCCCHHHHHHHHHHHhCC
No 26
>4GRF_A Putative thiol-disulfide oxidoreductase; OXIDOREDUCTASE, THIOREDOXIN DOMAIN, Structural Genomics; HET: GSH; 1.76A {Bacteroides vulgatus} SCOP: c.47.1.0, l.1.1.1
Probab=49.78 E-value=85 Score=18.84 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHHhhcCCCcc
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIEHAGDGRVF 35 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~EH~~~gk~F 35 (82)
+.++|++|++++.+........-+.+-+.....+
T Consensus 113 ~~lid~~g~i~~~~~~~~~~~~~l~~~~~~~~~~ 146 (152)
T 4GRF_A 113 IILVDPEGKIVAKELRGDDLYNTVEKFVNGAKEG 146 (152)
T ss_dssp EEEECTTSBEEECCCCHHHHHHHHHHHHC-----
T ss_pred EEEECCCCCEEEeecCchhHHHHHHHHHhccccC
No 27
>PF12744.11 ; ATG19 ; Autophagy protein Atg19, Atg8-binding
Probab=44.92 E-value=39 Score=27.62 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred CeEEeCCCCCEEEEEecCCCHH
Q FD01872540_026 1 FYQLINSSGDVIYHGITDRTVQ 22 (82)
Q Consensus 1 vYql~d~~G~vvY~GIT~r~~~ 22 (82)
|-+++|..|+|+|.|.....|.
T Consensus 164 ~I~Lvd~~~~vvysG~~~~~~~ 185 (258)
T G8BMN5_TETPH/1 164 YIYIYDPSDDSVQYIANIATPQ 185 (258)
T ss_pred cEEEECCCCCEEEEEEeCCCCC
No 28
>3FW2_C thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreductase, TlpA-like family, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: ACT, MSE; 1.74A {Bacteroides thetaiotaomicron} SCOP: c.47.1.0, l.1.1.1
Probab=41.55 E-value=58 Score=19.60 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHHhh
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIEHA 29 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~EH~ 29 (82)
+-++|++|++++.++........+.+.+
T Consensus 120 ~~lid~~g~i~~~~~~~~~~~~~l~~~l 147 (150)
T 3FW2_C 120 NILLSSDGKILAKNLRGEELKKKIENIV 147 (150)
T ss_dssp EEEECTTCBEEEESCCHHHHHHHHHHHH
T ss_pred EEEECCCCcEEeecCCHHHHHHHHHHHH
No 29
>2GW6_A tRNA-splicing endonuclease subunit Sen15; SEN15_HUMAN, tRNA Endonuclease, Structural Genomics, PSI, Protein Structure Initiative, Center for Eukaryotic Structural Genomics, CESG, PROTEIN; NMR {Homo sapiens} SCOP: c.52.2.1, l.1.1.1
Probab=40.33 E-value=53 Score=22.36 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EeCCCCCEEEEEecC
Q FD01872540_026 4 LINSSGDVIYHGITD 18 (82)
Q Consensus 4 l~d~~G~vvY~GIT~ 18 (82)
.+|+++.||||-|++
T Consensus 109 ivd~DstivYY~i~~ 123 (123)
T 2GW6_A 109 IVESDSTIVYYKLTD 123 (123)
T ss_dssp EECTTSCEEEEEEEC
T ss_pred EEcCCCceEEEEecC
No 30
>2KZK_A Uncharacterized protein YOL083W; Selective autophagy, Atg34, alpha-mannosidase, Atg19, PROTEIN TRANSPORT; NMR {Saccharomyces cerevisiae}
Probab=38.95 E-value=63 Score=23.25 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred EEeCCCCCEEEEEec
Q FD01872540_026 3 QLINSSGDVIYHGIT 17 (82)
Q Consensus 3 ql~d~~G~vvY~GIT 17 (82)
.|+|.+|+|+|.|..
T Consensus 81 ~Lvd~~~~viy~G~~ 95 (107)
T 2KZK_A 81 KVVNQDGETILVGKC 95 (107)
T ss_dssp EEECTTSCEEEECCC
T ss_pred EEECCCCCEEEEEEc
No 31
>2KZB_A Autophagy-related protein 19; Selective autophagy, Atg19, alpha-mannosidase, PROTEIN TRANSPORT; NMR {Saccharomyces cerevisiae}
Probab=38.34 E-value=64 Score=23.62 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=0.0 Template_Neff=4.700
Q ss_pred EEeCCCCCEEEEEec
Q FD01872540_026 3 QLINSSGDVIYHGIT 17 (82)
Q Consensus 3 ql~d~~G~vvY~GIT 17 (82)
.|+|.+|+|+|.|..
T Consensus 87 ~Lvd~~~~viytG~~ 101 (118)
T 2KZB_A 87 EIENQYGEVIFLGKY 101 (118)
T ss_dssp EEECTTSSEEEEECC
T ss_pred EEECCCCCEEEEEec
No 32
>PF18197.5 ; TTHB210-like ; Hypothetical protein TTHB210
Probab=34.93 E-value=64 Score=18.86 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCCCCEEEEEec
Q FD01872540_026 6 NSSGDVIYHGIT 17 (82)
Q Consensus 6 d~~G~vvY~GIT 17 (82)
|.+|+++..||+
T Consensus 1 d~~g~p~~iGv~ 12 (48)
T W0RBT8_9BACT/7 1 DHAGAPTELGVA 12 (48)
T ss_pred CCCCCeEEEEEE
No 33
>5ENU_B Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SSGCID, Peroxiredoxin, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE; 1.35A {Burkholderia ambifaria} SCOP: c.47.1.0
Probab=30.35 E-value=1.6e+02 Score=18.21 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred eEEeCCCCCEE--EEEecCCCHHHHHHHhh
Q FD01872540_026 2 YQLINSSGDVI--YHGITDRTVQERVIEHA 29 (82)
Q Consensus 2 Yql~d~~G~vv--Y~GIT~r~~~~R~~EH~ 29 (82)
..++|++|+++ |.|.........+.+.+
T Consensus 129 ~~lid~~g~i~~~~~~~~~~~~~~~~~~~l 158 (161)
T 5ENU_B 129 TFLIDADGVLRQAWRGIKVPGHVDDVLSAV 158 (161)
T ss_dssp EEEECTTSBEEEEEESCCSTTHHHHHHHHH
T ss_pred EEEECCCCeEEEEEeCCCCCCCHHHHHHHH
No 34
>3HCZ_A Possible thiol-disulfide isomerase; APC61559.2, thiol-disulfide isomerase, Cytophaga hutchinsonii ATCC, structural genomics, PSI-2, protein structure initiative, midwest center for structural; HET: SO4; 1.88A {Cytophaga hutchinsonii} SCOP: c.47.1.0, l.1.1.1
Probab=30.02 E-value=2e+02 Score=17.07 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIE 27 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~E 27 (82)
+.++|++|+++|..........-+.+
T Consensus 115 ~~lid~~g~i~~~~~~~~~~~~~~~~ 140 (148)
T 3HCZ_A 115 LYVLDKNKVIIAKRIGYENLDDFLVQ 140 (148)
T ss_dssp EEEECTTCBEEEESCCGGGHHHHHHH
T ss_pred EEEECCCCeEEEeeCChhcHHHHHHH
No 35
>PF09919.13 ; DUF2149 ; Uncharacterized conserved protein (DUF2149)
Probab=29.52 E-value=65 Score=22.18 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred CeEEeCCCCCEEEE
Q FD01872540_026 1 FYQLINSSGDVIYH 14 (82)
Q Consensus 1 vYql~d~~G~vvY~ 14 (82)
+|++ ++|+++|+
T Consensus 80 aYrl--~~G~~iyV 91 (93)
T Q5LCB9_BACFN/1 80 AYEL--ENGKIIYV 91 (93)
T ss_pred EEEc--CCCCEEEe
No 36
>PF20033.3 ; DUF6438 ; Domain of unknown function (DUF6438)
Probab=29.06 E-value=67 Score=18.63 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred eCCCCCEEEEEe
Q FD01872540_026 5 INSSGDVIYHGI 16 (82)
Q Consensus 5 ~d~~G~vvY~GI 16 (82)
++++|.++|.|.
T Consensus 19 I~~dG~v~~~~~ 30 (76)
T A0A0Q7E0J7_9CA 19 LRNDGTVYFCGR 30 (76)
T ss_pred EeCCCEEEEECe
No 37
>2LRT_A Uncharacterized protein; STRUCTURAL GENOMICS, THIOREDOXIN-LIKE, New York Structural Genomics Research Consortium, NYSGRC, PSI-Biology, OXIDOREDUCTASE; NMR {Bacteroides vulgatus}
Probab=28.56 E-value=72 Score=19.90 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=0.0 Template_Neff=11.900
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+.++|++|++++.+....+.+.
T Consensus 117 ~~lid~~g~i~~~~~g~~~~~~ 138 (152)
T 2LRT_A 117 VFLVNRNNELSARGENIKDLDE 138 (152)
T ss_dssp EEEEETTTEEEEETTTCSCHHH
T ss_pred EEEEcCCCCEeeCCCCHHHHHH
No 38
>PF13167.10 ; GTP-bdg_N ; GTP-binding GTPase N-terminal
Probab=27.58 E-value=1.8e+02 Score=18.45 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred ceEEecCCCCHHHHHHHHHHH
Q FD01872540_026 37 KVRYVDDLGSRVNARNIEGSI 57 (82)
Q Consensus 37 ~~~vi~~~lsr~qAR~iEgs~ 57 (82)
...++.+.|+..|.++||..+
T Consensus 53 ~~vv~~~~L~p~Q~~nL~~~~ 73 (91)
T I0I415_CALAS/5 53 NMVIFDEELSPRQQRELEKAL 73 (91)
T ss_pred CEEEECCCCCHHHHHHHHHHH
No 39
>5IMF_A Bacterioferritin comigratory protein; PrxQ, BCP, Peroxidase, redox, OXIDOREDUCTASE; 1.04A {Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)}
Probab=27.02 E-value=2.2e+02 Score=17.25 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEE--EEEecCCCHHHHHHHhh
Q FD01872540_026 2 YQLINSSGDVI--YHGITDRTVQERVIEHA 29 (82)
Q Consensus 2 Yql~d~~G~vv--Y~GIT~r~~~~R~~EH~ 29 (82)
.-++|++|+++ |.|.........+.+.+
T Consensus 125 ~~~id~~g~v~~~~~~~~~~~~~~~~~~~l 154 (160)
T 5IMF_A 125 TFLLSPEGQVVQAWRKVKVAGHADAVLAAL 154 (160)
T ss_dssp EEEECTTSCEEEEEESCCCTTHHHHHHHHH
T ss_pred EEEECCCCeEEEEEccccccccHHHHHHHH
No 40
>PF11633.12 ; bCoV_SUD_M ; Betacoronavirus single-stranded poly(A) binding domain
Probab=26.33 E-value=3.7e+02 Score=20.77 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=0.0 Template_Neff=3.400
Q ss_pred CCCEEEEEecCCCHHHHHHHhhcC-CC--cccceEEecCCCCHHHHHHH
Q FD01872540_026 8 SGDVIYHGITDRTVQERVIEHAGD-GR--VFSKVRYVDDLGSRVNARNI 53 (82)
Q Consensus 8 ~G~vvY~GIT~r~~~~R~~EH~~~-gk--~F~~~~vi~~~lsr~qAR~i 53 (82)
.+-+.|||-|..+|..-+..-+.+ +| .---+=+|..|++..||+..
T Consensus 67 ~~Gv~fY~Ys~k~pL~~vi~~lN~l~k~ii~~PlGyIthGl~L~~aa~~ 115 (143)
T R1AB_SARS/1327 67 DYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARC 115 (143)
T ss_pred ecceEEEEEcCCCcHHHHHHHHhhcCCCeeeccceeeccCCCHHHHHHH
No 41
>2B1L_B Thiol:disulfide interchange protein dsbE; Comparison with the E.coli CcmG, folding topology change, OXIDOREDUCTASE; 1.9A {Escherichia coli} SCOP: c.47.1.10
Probab=26.16 E-value=2.2e+02 Score=16.37 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+.++|++|++++.+.....+..
T Consensus 90 ~~~~d~~g~i~~~~~g~~~~~~ 111 (129)
T 2B1L_B 90 TFLIDGNGIIRYRHAGDLNPRV 111 (129)
T ss_dssp EEEECTTSCEEEEEESCCCHHC
T ss_pred EEEECCCCcEEEEEcCCCCHHH
No 42
>7XC3_B Papain-like protease nsp3; G-quadruplex-binding macrodomain, SARS-unique domain, VIRAL PROTEIN; 1.7A {Severe acute respiratory syndrome coronavirus 2}
Probab=25.80 E-value=2.7e+02 Score=21.04 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=0.0 Template_Neff=3.500
Q ss_pred CCCEEEEEecCCCHHHHHHHhhcC-CC--cccceEEecCCCCHHHHHHH
Q FD01872540_026 8 SGDVIYHGITDRTVQERVIEHAGD-GR--VFSKVRYVDDLGSRVNARNI 53 (82)
Q Consensus 8 ~G~vvY~GIT~r~~~~R~~EH~~~-gk--~F~~~~vi~~~lsr~qAR~i 53 (82)
.+-+.|||-|..+|..-+..-+.+ +| .---+=+|..|++..||+..
T Consensus 53 ~~Gv~fY~Ys~k~pl~~vi~~lN~l~~~ii~~PlGyIthGl~L~~aa~~ 101 (127)
T 7XC3_B 53 DYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARY 101 (127)
T ss_dssp ESSSEEEEECTTSCHHHHHHHHHHHTCCEEECCTTBTTTSBCHHHHHHH
T ss_pred eCceEEEEEcCCChHHHHHHHHhHcCCceeeccchhhhcCCCHHHHHHH
No 43
>7XC4_B Papain-like protease nsp3; G-quadruplex-binding, Viral protein; HET: BJ6; 2.1A {Severe acute respiratory syndrome coronavirus 2}
Probab=25.50 E-value=2.8e+02 Score=21.06 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=0.0 Template_Neff=3.500
Q ss_pred CCCEEEEEecCCCHHHHHHHhhcC-CC--cccceEEecCCCCHHHHHHH
Q FD01872540_026 8 SGDVIYHGITDRTVQERVIEHAGD-GR--VFSKVRYVDDLGSRVNARNI 53 (82)
Q Consensus 8 ~G~vvY~GIT~r~~~~R~~EH~~~-gk--~F~~~~vi~~~lsr~qAR~i 53 (82)
.+-+.|||-|..+|..-+..-+.+ +| .---+=+|..|++..||+..
T Consensus 53 ~~Gv~fY~Ys~k~pl~~vi~~lN~l~~~ii~~PlGyIthGl~L~~aa~~ 101 (129)
T 7XC4_B 53 DYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARY 101 (129)
T ss_dssp EESEEEEEECTTSCHHHHHHHHHHHTCCEEECCTTBTTTSBCHHHHHHH
T ss_pred eCceEEEEEcCCChHHHHHHHHhHcCCceeeccchhhhcCCCHHHHHHH
No 44
>4EVM_A Thioredoxin family protein; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; 1.506A {Streptococcus pneumoniae} SCOP: c.47.1.0
Probab=25.35 E-value=2.2e+02 Score=16.23 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+.++|++|++++...-..++..
T Consensus 108 ~~lid~~g~i~~~~~~~~~~~~ 129 (138)
T 4EVM_A 108 QAFIDKEGKLVKTHPGFMEKDA 129 (138)
T ss_dssp EEEECTTCCEEEEEESCCCHHH
T ss_pred EEEECCCCCEEEecCCccCHHH
No 45
>4FO5_A thioredoxin-like protein; AhpC/TSA family protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, OXIDOREDUCTASE; HET: MSE; 2.02A {Parabacteroides distasonis}
Probab=25.11 E-value=1.3e+02 Score=18.28 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIE 27 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~E 27 (82)
+-++|++|++++.+........-+.+
T Consensus 117 ~~~id~~g~v~~~~~~~~~l~~~l~~ 142 (143)
T 4FO5_A 117 NFLINDEGVIIAANVTPEKLTEILKA 142 (143)
T ss_dssp EEEECTTSBEEEESCCHHHHHHHHTC
T ss_pred EEEECCCCcEEEecCCHHHHHHHHhh
No 46
>3EUR_A uncharacterized protein; PSI2, MCSG, conserved protein, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, unknown function; HET: MSE; 1.3A {Bacteroides fragilis} SCOP: c.47.1.0, l.1.1.1
Probab=24.92 E-value=81 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIE 27 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~E 27 (82)
+-++|++|++++.+........-+.+
T Consensus 117 ~~~id~~g~i~~~~~~~~~l~~~l~~ 142 (142)
T 3EUR_A 117 LYLLDKNKTVLLKDATLQKVEQYLAE 142 (142)
T ss_dssp EEEECTTCBEEEEEECHHHHHHHHHC
T ss_pred EEEECCCCeEEEccCCHHHHHHHHhC
No 47
>2B7K_C SCO1 protein; Metallochaperone, Cytochrome c Oxidase, Sco, Sco1, METAL BINDING PROTEIN; 1.8A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=24.65 E-value=3.1e+02 Score=17.50 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIE 27 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~E 27 (82)
+.++|.+|+++|.....-.+..-+..
T Consensus 148 ~~lid~~g~i~~~~~~~~~~~~~~~~ 173 (200)
T 2B7K_C 148 FYLMDPEGQFVDALGRNYDEKTGVDK 173 (200)
T ss_dssp EEEECTTSCEEEEECTTCCTTHHHHH
T ss_pred EEEECCCCcEEEEecCCCChhhHHHH
No 48
>2KQV_A Non-structural protein 3; severe acute respiratory syndrome (SARS), nonstructural protein 3, macrodomains, RNA-binding proteins, Structural Genomics, PSI-2, JCSG, Functional; NMR {SARS coronavirus}
Probab=24.39 E-value=3.9e+02 Score=21.61 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred CCCEEEEEecCCCHHHHHHHhhcC-CC--cccceEEecCCCCHHHHHHH
Q FD01872540_026 8 SGDVIYHGITDRTVQERVIEHAGD-GR--VFSKVRYVDDLGSRVNARNI 53 (82)
Q Consensus 8 ~G~vvY~GIT~r~~~~R~~EH~~~-gk--~F~~~~vi~~~lsr~qAR~i 53 (82)
.+-+.|||-|.++|..-+..-+.+ +| .---+=+|..|++..||+..
T Consensus 53 ~~Gv~fY~Ys~k~pL~~vi~~lN~l~k~ii~~PlGyIthGl~L~~aa~~ 101 (198)
T 2KQV_A 53 DYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARC 101 (198)
T ss_dssp CSSSCCEEECTTSCHHHHHHHHHHHCSCEEECCSTTSSSCCCHHHHHHH
T ss_pred ecceEEEEEcCCCcHHHHHHHHhhcCCCeeeccceeeecCCCHHHHHHH
No 49
>4WBJ_A Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=23.54 E-value=2.8e+02 Score=16.56 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+-++|.+|++++......++..
T Consensus 134 ~~lid~~g~i~~~~~~~~~~~~ 155 (164)
T 4WBJ_A 134 IYLMDRDGRFVSPFNLKRTPEE 155 (164)
T ss_dssp CEEECTTSCEEEECCCSSCHHH
T ss_pred EEEECCCCcEEEeecCCCCHHH
No 50
>4WBJ_B Blr1131 protein; copper, chaperone, cytochrome oxidase, CuA; HET: SIN; 1.3A {Bradyrhizobium diazoefficiens} SCOP: c.47.1.0
Probab=23.54 E-value=2.8e+02 Score=16.56 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+-++|.+|++++......++..
T Consensus 134 ~~lid~~g~i~~~~~~~~~~~~ 155 (164)
T 4WBJ_B 134 IYLMDRDGRFVSPFNLKRTPEE 155 (164)
T ss_dssp CEEECTTSCEEEECCCSSCHHH
T ss_pred EEEECCCCcEEEeecCCCCHHH
No 51
>6VPD_A Glutathione peroxidase; glutathione peroxidase, OXIDOREDUCTASE; 2.603A {Hypocrea jecorina (strain QM6a)} SCOP: c.47.1.0
Probab=22.91 E-value=2e+02 Score=18.01 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEE---EecCCCHHHHHHHhhcCCC
Q FD01872540_026 2 YQLINSSGDVIYH---GITDRTVQERVIEHAGDGR 33 (82)
Q Consensus 2 Yql~d~~G~vvY~---GIT~r~~~~R~~EH~~~gk 33 (82)
..++|++|++++. +.+.......+.+.+....
T Consensus 157 ~~lid~~g~i~~~~~~~~~~~~~~~~l~~~l~~~~ 191 (192)
T 6VPD_A 157 KFLIGRDGKVIGRWASTTEPEKIQDKIIEAIKQPA 191 (192)
T ss_dssp EEEECTTSCEEEEECTTSCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCcEEEEecCCCCHHHHHHHHHHHHcCCC
No 52
>2B5Y_A YkuV protein; Thioredoxin-like, OXIDOREDUCTASE; NMR {Bacillus subtilis} SCOP: c.47.1.10
Probab=22.83 E-value=2.8e+02 Score=16.41 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+-++|++|++++......++..
T Consensus 114 ~~lid~~g~i~~~~~~~~~~~~ 135 (148)
T 2B5Y_A 114 YYVFDKTGQLRHFQAGGSGMKM 135 (148)
T ss_dssp EEEECTTSBEEEEEECCGGGTH
T ss_pred EEEECCCCcEEEEEecCchHHH
No 53
>3DRN_B Peroxiredoxin, bacterioferritin comigratory protein homolog; Peroxiredoxin, Bacterioferritin comigratory protein, OXIDOREDUCTASE; HET: CIT, GOL; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=22.64 E-value=2.4e+02 Score=17.45 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIE 27 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~E 27 (82)
+-++|++|++++.......+...+.+
T Consensus 114 ~~lid~~g~i~~~~~~~~~~~~~~~~ 139 (161)
T 3DRN_B 114 TFVIDKKGIIRHIYNSQMNPANHVNE 139 (161)
T ss_dssp EEEECTTSBEEEEEECSSCTTHHHHH
T ss_pred EEEECCCCeEEEEEecCCCCcchHHH
No 54
>2YZH_B Probable thiol peroxidase; Redox protein, Antioxidant, Oxidoreductase, Peroxidase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses; HET: SO4; 1.85A {Aquifex aeolicus} SCOP: c.47.1.0, l.1.1.1
Probab=22.10 E-value=3.4e+02 Score=17.81 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eEEeCCCCCEEEEE----ecCCCHHHHHHHhh
Q FD01872540_026 2 YQLINSSGDVIYHG----ITDRTVQERVIEHA 29 (82)
Q Consensus 2 Yql~d~~G~vvY~G----IT~r~~~~R~~EH~ 29 (82)
+.++|++|++++.. .........+.+++
T Consensus 136 ~~lid~~g~i~~~~~~~~~~~~~~~~~i~~~l 167 (171)
T 2YZH_B 136 VFIIDKEGKVAYVQLVPEITEEPNYDEVVNKV 167 (171)
T ss_dssp EEEECTTSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred EEEECCCCeEEEEEeCCCcccCCCHHHHHHHH
No 55
>3F9U_B Putative exported cytochrome C biogenesis-related protein; exported cytochrome C biogenesis-related protein, Bacteroides fragilis, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for; HET: MSE, NO3; 2.2A {Bacteroides fragilis NCTC 9343}
Probab=22.04 E-value=3.2e+02 Score=16.76 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHHhh
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIEHA 29 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~EH~ 29 (82)
+-++|++|++++...-.......+.+.+
T Consensus 134 ~~lid~~g~i~~~~~~~~~~~~~l~~~l 161 (172)
T 3F9U_B 134 YVLIDNEGNPLNKSYAYDEDISKYINFL 161 (172)
T ss_dssp EEEECTTSCBSSCCBCSCCCHHHHHHHH
T ss_pred EEEEcCCCCeeeecccCcccHHHHHHHH
No 56
>PF08534.14 ; Redoxin ; Redoxin
Probab=21.27 E-value=3e+02 Score=16.07 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEEEecCCCHHHHHHHhh
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQERVIEHA 29 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~R~~EH~ 29 (82)
+-++|++|++++.+.-... ...+.+-+
T Consensus 109 ~~lid~~g~v~~~~~~~~~-~~~l~~~l 135 (135)
T Q6AIL8_DESPS/2 109 GFLVNRLGNVVKRYTGYVP-EEQLEKDI 135 (135)
T ss_pred EEEECCCCcEEEEEeCCCC-HHHHHhhC
No 57
>2FY6_A Peptide methionine sulfoxide reductase msrA/msrB; PILB, Cytochrome maturation protein, Thioredoxin, Methionine sulfoxide reductase, OXIDOREDUCTASE; 1.9A {Neisseria meningitidis} SCOP: c.47.1.10
Probab=21.14 E-value=3e+02 Score=16.09 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+-++|.+|+++|......++..
T Consensus 110 ~~~id~~g~i~~~~~~~~~~~~ 131 (143)
T 2FY6_A 110 WALIGKDGDVQRIVKGSINEAQ 131 (143)
T ss_dssp EEEECTTSCEEEEEESCCCHHH
T ss_pred EEEEcCCCCEEEEEcCCCCHHH
No 58
>PF08789.14 ; PBCV_basic_adap ; PBCV-specific basic adaptor domain
Probab=21.07 E-value=1.2e+02 Score=17.81 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred eCCCCCEEEEE
Q FD01872540_026 5 INSSGDVIYHG 15 (82)
Q Consensus 5 ~d~~G~vvY~G 15 (82)
.+++|+.||.|
T Consensus 3 ~~~~G~~iy~g 13 (37)
T Q84414_PBCV1/5 3 INAKKRVVYKD 13 (37)
T ss_pred cCCCCCeEEEC
No 59
>2H30_A Peptide methionine sulfoxide reductase msrA/msrB; reduced, methionine sulfoxide, thiol-disulfide exchange, OXIDOREDUCTASE; HET: MSE; 1.6A {Neisseria gonorrhoeae} SCOP: c.47.1.10
Probab=20.93 E-value=3.3e+02 Score=16.52 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred eEEeCCCCCEEEEEecCCCHHH
Q FD01872540_026 2 YQLINSSGDVIYHGITDRTVQE 23 (82)
Q Consensus 2 Yql~d~~G~vvY~GIT~r~~~~ 23 (82)
+-++|++|++++......+...
T Consensus 125 ~~lid~~g~i~~~~~g~~~~~~ 146 (164)
T 2H30_A 125 WALIGKDGDVQRIVKGSINEAQ 146 (164)
T ss_dssp EEEECTTSCEEEEEESCCCHHH
T ss_pred EEEEcCCCcEEEEEcCCCCHHH