Query FD01875457_03725 type IV secretion protein Rhs
Match_columns 106
No_of_seqs 26 out of 28
Neff 3.15024
Searched_HMMs 86581
Date Mon Feb 26 20:38:51 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/6821243.hhr -oa3m ../results/6821243.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2LWF_A Monothiol glutaredoxin- 97.5 0.0019 2.2E-08 44.4 8.2 76 13-100 27-103 (119)
2 3OQG_A Hpy188I; ENDONUCLEASE-D 97.2 0.0072 8.3E-08 46.6 8.9 79 13-100 71-180 (180)
3 PF15653.10 ; Tox-URI2 ; URI fo 96.7 0.03 3.5E-07 36.7 7.6 71 5-91 1-71 (71)
4 PF09517.14 ; RE_Eco29kI ; Eco2 92.3 0.86 9.9E-06 34.9 5.6 73 13-86 7-109 (168)
5 1YD0_A UvrABC system protein C 91.7 1.3 1.5E-05 26.8 5.0 79 13-105 17-96 (96)
6 3MX1_A Eco29kIR; type II restr 90.7 1.4 1.7E-05 35.9 5.7 74 13-86 68-170 (235)
7 PF19835.3 ; SegE_GIY-YIG ; Put 90.0 6.9 8E-05 27.0 7.8 71 10-86 16-104 (123)
8 2WSH_C ENDONUCLEASE II; GIY-YI 89.7 8.6 9.9E-05 27.2 8.5 77 13-103 42-143 (143)
9 PF19239.3 ; GIY_YIG_domain ; G 74.0 44 0.0005 23.6 7.1 73 13-105 38-133 (137)
10 6OWD_B R+7; Parallel coiled-co 73.8 6.4 7.4E-05 24.1 2.1 13 43-55 5-17 (30)
11 PF20815.1 ; GIY_YIG_2 ; GIY-YI 73.1 19 0.00022 25.3 4.7 72 13-102 1-124 (137)
12 PF09743.13 ; E3_UFM1_ligase ; 68.4 43 0.0005 26.7 6.2 60 30-94 191-250 (267)
13 2N2U_A OR358; Structural Genom 67.1 17 0.0002 26.6 3.5 39 48-89 18-56 (77)
14 6X62_LX Type IV secretion syst 61.4 69 0.0008 30.8 7.0 86 14-100 444-535 (579)
15 PF14452.10 ; Multi_ubiq ; Mult 60.4 16 0.00018 22.7 2.1 18 15-32 1-18 (74)
16 PF18142.5 ; SLATT_fungal ; SMO 54.5 21 0.00025 26.4 2.2 18 36-53 68-85 (122)
17 2MMV_B Cell division protein Z 51.9 65 0.00075 21.1 4.0 43 15-59 12-54 (86)
18 2HW4_A 14 kDa phosphohistidine 50.5 29 0.00033 26.3 2.4 33 16-61 106-138 (144)
19 PF11900.12 ; DUF3420 ; Domain 46.5 35 0.0004 21.7 2.0 23 30-52 1-23 (45)
20 2L6R_A Head-to-tail joining pr 46.5 66 0.00076 20.8 3.3 34 13-49 22-55 (62)
21 PF20393.2 ; Pro_CA_2 ; Putativ 45.7 80 0.00092 21.1 3.7 30 42-71 91-121 (124)
22 1MK0_A Intron-associated endon 45.1 1E+02 0.0012 18.1 9.0 76 12-96 3-95 (97)
23 1YWL_A Hypothetical UPF0213 pr 41.2 1.4E+02 0.0016 18.7 4.4 64 11-82 6-72 (96)
24 PF14268.10 ; YoaP ; YoaP-like 39.8 74 0.00085 19.8 2.7 18 7-24 15-32 (44)
25 2JV8_A Uncharacterized protein 39.2 37 0.00043 23.5 1.4 39 15-54 19-58 (73)
26 1ZG2_A Hypothetical UPF0213 pr 38.3 1.7E+02 0.002 19.4 4.4 63 11-81 7-70 (107)
27 1YD6_B UvrC; DNA BINDING PROTE 36.7 1.5E+02 0.0018 17.8 6.4 83 6-105 10-98 (99)
28 PF07067.15 ; DUF1340 ; Protein 35.1 36 0.00042 29.5 1.0 43 38-81 109-155 (236)
29 PF12321.12 ; DUF3634 ; Protein 35.0 55 0.00064 23.8 1.8 30 21-51 60-89 (104)
30 8FJE_B E8; De novo protein, Ha 34.9 54 0.00062 26.2 1.9 27 69-95 34-60 (145)
31 1T3U_C conserved hypothetical 34.7 1.6E+02 0.0019 19.8 3.9 44 15-59 7-50 (104)
32 PF18215.5 ; Rtt106_N ; Histone 34.7 62 0.00071 20.5 1.8 18 40-57 6-23 (47)
33 PF05164.17 ; ZapA ; Cell divis 34.3 1.6E+02 0.0018 19.5 3.7 42 16-59 2-43 (85)
34 PF05120.16 ; GvpG ; Gas vesicl 34.2 2.4E+02 0.0028 19.4 4.8 45 32-86 21-65 (72)
35 8CSS_X 28S ribosomal protein S 32.4 49 0.00056 28.2 1.4 32 21-53 65-96 (398)
36 PF01949.20 ; DUF99 ; Protein o 31.2 50 0.00058 25.1 1.2 26 17-42 68-94 (177)
37 PF09621.14 ; LcrR ; Type III s 30.7 1.8E+02 0.0021 22.3 4.0 55 30-91 51-110 (138)
38 PF18472.5 ; HP1451_C ; HP1451 30.4 1E+02 0.0012 21.9 2.4 18 44-61 36-53 (67)
39 3HNW_B uncharacterized protein 30.3 1.6E+02 0.0019 21.4 3.5 43 15-59 10-54 (138)
40 3SEO_A VopL C terminal domain 28.7 1E+02 0.0012 27.0 2.6 52 44-95 25-77 (241)
41 4P1M_B Cell division protein Z 28.3 2.5E+02 0.0029 20.1 4.2 44 15-59 20-63 (123)
42 3TQM_A Ribosome-associated fac 27.7 2.2E+02 0.0026 18.1 3.5 39 16-54 53-91 (96)
43 PF19678.3 ; DUF6180 ; Family o 27.2 2.4E+02 0.0028 21.8 4.1 34 10-50 57-98 (101)
44 5OL8_C Transcription elongatio 26.9 4.7E+02 0.0054 21.3 5.8 55 11-67 130-184 (319)
45 PF20941.1 ; DUF6848 ; Domain o 25.1 2.1E+02 0.0025 19.7 3.2 40 14-54 8-59 (99)
46 7BR2_C Lipolytic enzyme, G-D-S 24.6 3.2E+02 0.0037 22.9 4.6 40 13-54 312-355 (450)
47 PF15331.10 ; TP53IP5 ; Cellula 23.5 48 0.00055 28.5 -0.1 7 39-45 185-191 (218)
48 PF07067.15 ; DUF1340 ; Protein 22.3 1.4E+02 0.0017 26.1 2.4 63 31-94 1-67 (236)
49 8A50_B Heat shock factor 2-bin 22.1 93 0.0011 17.2 0.9 25 23-57 2-26 (32)
50 8FJE_B E8; De novo protein, Ha 21.8 1.3E+02 0.0015 24.2 1.9 27 69-95 90-116 (145)
51 PF10929.12 ; DUF2811 ; Protein 21.7 2E+02 0.0023 19.8 2.5 20 38-57 4-23 (57)
52 PF19859.3 ; DUF6333 ; Family o 21.3 2.4E+02 0.0028 24.6 3.5 37 37-73 95-132 (237)
53 PF05005.19 ; Ocnus ; Janus/Ocn 21.0 1.8E+02 0.0021 20.1 2.3 31 16-59 74-104 (104)
54 PF11934.12 ; DUF3452 ; Domain 21.0 2.6E+02 0.003 20.5 3.2 25 31-55 29-61 (136)
55 6NEQ_g DAP3 protein; Human mit 20.2 1.4E+02 0.0017 23.5 1.9 32 21-53 18-49 (351)
56 PF09712.14 ; PHA_synth_III_E ; 20.1 2.2E+02 0.0025 23.5 2.9 24 31-54 265-293 (298)
No 1
>2LWF_A Monothiol glutaredoxin-S16, chloroplastic; Nuclease, Glutaredoxin, HYDROLASE; NMR {Arabidopsis thaliana}
Probab=97.51 E-value=0.0019 Score=44.39 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred EEEEEEEC-CEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeeecccchHHHHHHHHHHHHHHHHHHC
Q FD01875457_037 13 GVYKIEIN-GELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLESGHETTASAKAVETAKLDAHYEKTG 91 (106)
Q Consensus 13 gvY~I~in-g~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~~~~~ktg 91 (106)
|||.|.-. +++.-+|+| .+|..||.++.+.. +.....-++......+..+..+.|.+.|..|....|
T Consensus 27 GVY~i~d~~~~~lYIG~s--------~nLr~rl~~h~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~g 94 (119)
T 2LWF_A 27 GVYAVYDKSDELQFVGIS--------RNIAASVSAHLKSV----PELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTG 94 (119)
T ss_dssp EEEEEECTTCCEEEEEEE--------SCHHHHHHHHHHHS----GGGCSEEEEEECSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCCEEEEEEe--------ccHHHHHHHHHhcC----hhhcceEEEEEecCCCHHHHHHHHHHHHHHHHHHHC
Q ss_pred CCCCCcccC
Q FD01875457_037 92 QVPEGNQKS 100 (106)
Q Consensus 92 ~iP~GN~ks 100 (106)
..|++|...
T Consensus 95 ~~P~~N~~~ 103 (119)
T 2LWF_A 95 KVPPGNKSG 103 (119)
T ss_dssp CCCTTTTTS
T ss_pred CCCCCCCCC
No 2
>3OQG_A Hpy188I; ENDONUCLEASE-DNA COMPLEX, RESTRICTION ENZYME, HPY188I, INTERCALATION, GIY-YIG NUCLEASE, CATALYTIC MECHANISM, PSEUDOPALINDROME, HYDROLASE-DNA COMPLEX; HET: MSE; 1.75A {Helicobacter pylori}
Probab=97.19 E-value=0.0072 Score=46.56 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred EEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHH--------------------HHHHHHHHCCCceEEEEeee-c---
Q FD01875457_037 13 GVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQ--------------------VTKLEKTYGKGNVKGIVLES-G--- 68 (106)
Q Consensus 13 gvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQ--------------------vrkL~k~~~~~~V~g~Vi~~-g--- 68 (106)
|||-+.+++++.++|++. .+|-.|+.+- |+..-+. +..|+=.+... .
T Consensus 71 gVYafvvd~~IvYIG~t~-------~~L~~R~~~Y~~G~~~~~~~~~~q~Tn~~ii~~~L~~--g~~V~iy~~~~~~~~~ 141 (180)
T 3OQG_A 71 LVYVFVIQGKIFKIGHSI-------TPITKRVQSYNCGKVEYRKNGTCSTTNYFVLQSLLKI--NKIVQVYAFFPEQPTY 141 (180)
T ss_dssp EEEEEEETTEEEEEEEES-------SCHHHHHHHHTTCCHHHHHHTCSCHHHHHHHHHHHHH--TCCEEEEEECCCCCEE
T ss_pred eEEEEEECCEEEEEEEeC-------CcHHHHHHhhcCCCccccCCCCCchHHHHHHHHHHHC--CCeEEEEEECCCCCeE
Q ss_pred -------ccchHHHHHHHHHHHHHHHHHHCCCCCCcccC
Q FD01875457_037 69 -------HETTASAKAVETAKLDAHYEKTGQVPEGNQKS 100 (106)
Q Consensus 69 -------~~TT~~aK~~Et~~l~~~~~ktg~iP~GN~ks 100 (106)
.+....++..|...|..|....++.|+.|...
T Consensus 142 ~~~G~~~~~~~~~~~~lE~~LI~~y~~~~~~~P~wN~q~ 180 (180)
T 3OQG_A 142 TLFGKTYQDSFSTSKRAENVILENFIKNHNKKPIGCTQT 180 (180)
T ss_dssp EETTEEEESSSCHHHHHHHHHHHHHHHHHSSCCTTCCCC
T ss_pred EECCEEcccCccchHHHHHHHHHHHHHHcccCCCCcccC
No 3
>PF15653.10 ; Tox-URI2 ; URI fold toxin 2
Probab=96.73 E-value=0.03 Score=36.73 Aligned_cols=71 Identities=17% Similarity=0.024 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCCcccceEEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeeecccchHHHHHHHHHHHH
Q FD01875457_037 5 TNGATGDFGVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLESGHETTASAKAVETAKLD 84 (106)
Q Consensus 5 ~n~a~gnfgvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~ 84 (106)
|....-.--.|+|.=.+.++|||-.. -.|--.|++.|.+........++|+ .++|.+.|...|+
T Consensus 1 s~~~~k~~h~y~i~~k~~v~K~G~s~----------s~r~r~q~~~ln~~~~~~~~~~~i~------r~~a~~~E~~~i~ 64 (71)
T G0L0M8_ZOBGA/7 1 MEYGKKNPIGEMYLKKGELWKLGETK----------NPKTRYTQKWLRKMNLQKVTTHNGP------KKLMQMLEGMKLK 64 (71)
T ss_pred CCCCCCCCcceEEeecCCeEEeeeCC----------CccchhhHHHHHHhccccceeeecc------HHHHHHHHHHHHH
Q ss_pred HHHHHHC
Q FD01875457_037 85 AHYEKTG 91 (106)
Q Consensus 85 ~~~~ktg 91 (106)
+|.+..|
T Consensus 65 ~y~~~~G 71 (71)
T G0L0M8_ZOBGA/7 65 GYLAWKG 71 (71)
T ss_pred HHHHhhC
No 4
>PF09517.14 ; RE_Eco29kI ; Eco29kI restriction endonuclease
Probab=92.28 E-value=0.86 Score=34.95 Aligned_cols=73 Identities=21% Similarity=0.094 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred EEEEEEECC-----------------EEEEeeecc----------hhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEe
Q FD01875457_037 13 GVYKIEING-----------------ELYKYGKTD----------MNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVL 65 (106)
Q Consensus 13 gvY~I~ing-----------------~lyK~GKAD----------l~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi 65 (106)
|||.|...| ++.-+|||. ...++.+..|..||.++.+++.. -.+..+.-.=+
T Consensus 7 GVY~ly~~g~~~~y~~~~~~~~~~~~~piYVGkA~~~~~~~g~~~~~~~~~~~~L~~RL~~H~~si~~-~~~l~~~d~~~ 85 (168)
T B0C6N6_ACAM1/5 7 GVYALYCIAKSGIYSRFNSVNRTAFHIPIYVGKAVPKGWRQARQSSSSDTKSYELNNRIREHSRSIEI-GEGVNSSDFFC 85 (168)
T ss_pred eEEEEEEcCCccccccccccCcccCcccEEEEccCCcchhhcccCCCCccccCCHHHHHHHHHhcccc-cccCCccceEE
Q ss_pred eecccc---hHHHHHHHHHHHHHH
Q FD01875457_037 66 ESGHET---TASAKAVETAKLDAH 86 (106)
Q Consensus 66 ~~g~~T---T~~aK~~Et~~l~~~ 86 (106)
..-.+. ...+-.+|...|+.|
T Consensus 86 r~l~~~~~~~~~~~~~E~~LI~~~ 109 (168)
T B0C6N6_ACAM1/5 86 RFMILEGKESDLIGTVEAALIRKY 109 (168)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH
No 5
>1YD0_A UvrABC system protein C; DNA BINDING PROTEIN; 1.5A {Thermotoga maritima}
Probab=91.72 E-value=1.3 Score=26.85 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred EEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeee-cccchHHHHHHHHHHHHHHHHHHC
Q FD01875457_037 13 GVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLES-GHETTASAKAVETAKLDAHYEKTG 91 (106)
Q Consensus 13 gvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~-g~~TT~~aK~~Et~~l~~~~~ktg 91 (106)
|||.|.-++.+.-+| .+..|-.||.++.+..........-...-+.. ...+...|..+|...|+.|
T Consensus 17 Gvy~i~~~~~~~YiG--------~s~~l~~rl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~li~~~----- 83 (96)
T 1YD0_A 17 GVYIFKNKGVPIYIG--------KAKRLSNRLRSYLNPQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKY----- 83 (96)
T ss_dssp EEEEEEETTEEEEEE--------EESSHHHHHHGGGSCSSHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHHH-----
T ss_pred eEEEEeeCCeEEEEE--------echhHHHHHHHhhCCCcHHHHHHhhhccEEEEEEeCCHHHHHHHHHHHHHHh-----
Q ss_pred CCCCCcccCCCCCC
Q FD01875457_037 92 QVPEGNQKSYKPKG 105 (106)
Q Consensus 92 ~iP~GN~ks~kp~~ 105 (106)
-|+-|......++
T Consensus 84 -~p~~n~~~~~~~~ 96 (96)
T 1YD0_A 84 -RPKYNVRLKDTDF 96 (96)
T ss_dssp -CCTTCC-------
T ss_pred -CCCcccCCCCCCC
No 6
>3MX1_A Eco29kIR; type II restriction endonuclease, GIY-YIG endonuclease, HYDROLASE; 2.3A {Escherichia coli}
Probab=90.74 E-value=1.4 Score=35.90 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred EEEEEEECC-----------------EEEEeeecc----------hhHhHhhcCCCHHHHHHHHHHHH--HHCCCceEEE
Q FD01875457_037 13 GVYKIEING-----------------ELYKYGKTD----------MNRVTKSSGLPTRLHQQVTKLEK--TYGKGNVKGI 63 (106)
Q Consensus 13 gvY~I~ing-----------------~lyK~GKAD----------l~RvT~SSGlPtRLhqQvrkL~k--~~~~~~V~g~ 63 (106)
|||-|...| .+.=+|||+ -..-+.+.+|-.||.++.++++. ..-..++.-+
T Consensus 68 GVY~lyy~G~~~~Y~~~~~~~~~~~~~pIYVGKA~~~~~r~g~~~~~~~~~~~~L~~RL~~H~~~i~~~~~l~~~df~~r 147 (235)
T 3MX1_A 68 GVYALYYTGHYSLYDEYSRINRLAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCR 147 (235)
T ss_dssp EEEEEEECSCCGGGTTHHHHTSSSCCCCSEEEEECCTTTSCSSCSSCSSCCCSHHHHHHHHHHHHHHTCSSCCGGGEEEE
T ss_pred eeEEEEEeeCChhhchhhhhccccCCccEEEEccCCccccccccccccccccchHHHHHHHHhhhcccCCCcccceEEEE
Q ss_pred EeeecccchHHHHHHHHHHHHHH
Q FD01875457_037 64 VLESGHETTASAKAVETAKLDAH 86 (106)
Q Consensus 64 Vi~~g~~TT~~aK~~Et~~l~~~ 86 (106)
++.-....++.+..+|...|+.|
T Consensus 148 ~l~~~~~~~~~i~~~E~~LI~~~ 170 (235)
T 3MX1_A 148 FVIFEATGSDMISTVQAALIKIY 170 (235)
T ss_dssp EEECCSGGGGGHHHHHHHHHHHH
T ss_pred EEEeccCCchhHHHHHHHHHHHH
No 7
>PF19835.3 ; SegE_GIY-YIG ; Putative endonuclease segE, GIY-YIG domain
Probab=90.03 E-value=6.9 Score=26.96 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred cceEEEEEE--ECCEEEEeeecc----------------hhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeeecccc
Q FD01875457_037 10 GDFGVYKIE--INGELYKYGKTD----------------MNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLESGHET 71 (106)
Q Consensus 10 gnfgvY~I~--ing~lyK~GKAD----------------l~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~g~~T 71 (106)
..++||.|. ++|+.| +|.+. ..++....+.-..|.+.+++ ++.....-.|++... +
T Consensus 16 ~~~~VY~i~~~~~~~~Y-IG~t~~~~~r~~~~~~r~~~h~~~~~~~~~~~~~l~~~~~~----~g~~~f~~~iLe~~~-~ 89 (123)
T A0A0K0KW02_9CA 16 YYGFVYRITNTTSSKSY-IGRKYFVQKRKPRGGKRRVTSESDWKQYYGSSEELKQDIRS----NGRDSFRREIISLHR-T 89 (123)
T ss_pred ceEEEEEEEECCCCcEE-eeEEEEecccCCCCCceeeeeecchhhhcCCcHHHHHHHHH----hCHHhceEEEEEEeC-C
Q ss_pred hHHHHHHHHHHHHHH
Q FD01875457_037 72 TASAKAVETAKLDAH 86 (106)
Q Consensus 72 T~~aK~~Et~~l~~~ 86 (106)
-+++.+.|...|..+
T Consensus 90 ~~~l~~~E~~~i~~~ 104 (123)
T A0A0K0KW02_9CA 90 LGKVNYEETRQLFLH 104 (123)
T ss_pred hHHHHHHHHHHHHHh
No 8
>2WSH_C ENDONUCLEASE II; GIY-YIG, NUCLEASE, HYDROLASE; HET: PEG, MSE; 1.9A {ENTEROBACTERIA PHAGE T4}
Probab=89.73 E-value=8.6 Score=27.20 Aligned_cols=77 Identities=23% Similarity=0.155 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHH----------------HHHHHCCCceEEEEeeecc-------
Q FD01875457_037 13 GVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTK----------------LEKTYGKGNVKGIVLESGH------- 69 (106)
Q Consensus 13 gvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrk----------------L~k~~~~~~V~g~Vi~~g~------- 69 (106)
|||.+..++++.-+|+|+ +|=.||.+..+. .........|.-.++....
T Consensus 42 GvY~~~~~~~ilYIG~t~--------~l~~Rl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 113 (143)
T 2WSH_C 42 VIYAIAINDELVYIGKTK--------NLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGSKVEFYARQCFNLSMTNEL 113 (143)
T ss_dssp EEEEEEETTEEEEEEEES--------CHHHHHHHHHHGGGC-----CCHHHHHHHHHHHTTCCEEEEEEECCEEEEEETT
T ss_pred eEEEEEECCEEEEEEecC--------CHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHCCCeEEEEEEecCCccccccc
Q ss_pred --cchHHHHHHHHHHHHHHHHHHCCCCCCcccCCCC
Q FD01875457_037 70 --ETTASAKAVETAKLDAHYEKTGQVPEGNQKSYKP 103 (106)
Q Consensus 70 --~TT~~aK~~Et~~l~~~~~ktg~iP~GN~ks~kp 103 (106)
++...+...|...|+.+ -|+-|....+.
T Consensus 114 ~~~~~~~~~~~E~~li~~~------~P~~N~~~~~~ 143 (143)
T 2WSH_C 114 GTMTIATIDLEAPLFIKLF------NPPWNIQHKKK 143 (143)
T ss_dssp EEEEEEHHHHHHHHHHHHH------CCTTCC-----
T ss_pred ccccchhHHHHHHHHHHHh------CChhhhcccCC
No 9
>PF19239.3 ; GIY_YIG_domain ; GIY-YIG domain-containing protein
Probab=73.99 E-value=44 Score=23.55 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEEEEE---------------CCEEEEeeecchhHhHhhcCCCHHHHHHHH--------HHHHHHCCCceEEEEeeecc
Q FD01875457_037 13 GVYKIEI---------------NGELYKYGKTDMNRVTKSSGLPTRLHQQVT--------KLEKTYGKGNVKGIVLESGH 69 (106)
Q Consensus 13 gvY~I~i---------------ng~lyK~GKADl~RvT~SSGlPtRLhqQvr--------kL~k~~~~~~V~g~Vi~~g~ 69 (106)
|||.|.. ++.+.=+|.| ..|=.||.+.++ ++........---.....
T Consensus 38 GvY~~~~~~~~~~~~~~~~~~~~~~~lYIG~a--------~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 107 (137)
T ET3_ARATH/69-2 38 GLYELGVGVIGQDQGQNFDPDNNVLGVYVGQC--------VDVKSRLQDYGRRGGHLPSGLYEDIFSEGYSVFYRWAP-- 107 (137)
T ss_pred eEEEEEeecCCCCCCccCCCCCCeeeEEEEEe--------CCHHHHHHHhcccCCcCcccHHHHHHhCCCeEEEEECh--
Q ss_pred cchHHHHHHHHHHHHHHHHHHCCCCCCcccCCCCCC
Q FD01875457_037 70 ETTASAKAVETAKLDAHYEKTGQVPEGNQKSYKPKG 105 (106)
Q Consensus 70 ~TT~~aK~~Et~~l~~~~~ktg~iP~GN~ks~kp~~ 105 (106)
.+.++|...|+.|. |+-|........
T Consensus 108 ----~~~~~e~~li~~~~------p~~N~~~~~~~~ 133 (137)
T ET3_ARATH/69-2 108 ----EAAATEGMLLSTFD------YAWNTCSNGERR 133 (137)
T ss_pred ----hHHHHHHHHHHhcC------chHhcccCCccc
No 10
>6OWD_B R+7; Parallel coiled-coil, Dimer, De novo peptide, DE NOVO PROTEIN; HET: ACE; 1.5A {N/A}
Probab=73.78 E-value=6.4 Score=24.09 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred HHHHHHHHHHHHH
Q FD01875457_037 43 RLHQQVTKLEKTY 55 (106)
Q Consensus 43 RLhqQvrkL~k~~ 55 (106)
||++|||.|++++
T Consensus 5 rlqrqiralqrqn 17 (30)
T 6OWD_B 5 RLQRQIRALQRQN 17 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 11
>PF20815.1 ; GIY_YIG_2 ; GIY-YIG catalytic domain
Probab=73.10 E-value=19 Score=25.33 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred EEEEEEECCE--------------------EEEeeecchhHhHhhcCCCHHHHHHHHHH---------------------
Q FD01875457_037 13 GVYKIEINGE--------------------LYKYGKTDMNRVTKSSGLPTRLHQQVTKL--------------------- 51 (106)
Q Consensus 13 gvY~I~ing~--------------------lyK~GKADl~RvT~SSGlPtRLhqQvrkL--------------------- 51 (106)
|||.+.+.+. +.-+|+| +.|-.||.+..+..
T Consensus 1 GvY~~~~~~~~~~~~~~~~~~~~~~~~~~~~lYVG~a--------~nL~~Rl~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (137)
T A0A2D3WMF1_9PR 1 GVYKWYMPQTLVDLLNVPMDGCEYKDGFGYFVYVGIA--------KNMRQRLDWHISQKHSKSSVKSGFLSTFRQTLCGL 72 (137)
T ss_pred CceEEecCHHHHHhccCCCCCccccCCCCceEEEEeC--------ccHHHHHHHHhhcCCccchhcccccchHHHHHHHH
Q ss_pred -----------HHHHCCCceEEEEeeecccchHHHHHHHHHHHHHHHHHHCCCCCCcccCCC
Q FD01875457_037 52 -----------EKTYGKGNVKGIVLESGHETTASAKAVETAKLDAHYEKTGQVPEGNQKSYK 102 (106)
Q Consensus 52 -----------~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~~~~~ktg~iP~GN~ks~k 102 (106)
..-.. .-.|......+..+|+..|...|..+. |+-|....+
T Consensus 73 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~E~~li~~~~------P~~N~~~~~ 124 (137)
T A0A2D3WMF1_9PR 73 AKVPMDDEDTVNTIID----QMSIEFSLCTSKDEAESIEKEIIHSST------LPLNIMHNK 124 (137)
T ss_pred hCCCCCChHHHHHHHH----hceEEEEECCChHHHHHHHHHHHHHCC------CCccccCCC
No 12
>PF09743.13 ; E3_UFM1_ligase ; E3 UFM1-protein ligase 1
Probab=68.37 E-value=43 Score=26.71 Aligned_cols=60 Identities=12% Similarity=0.239 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred chhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeeecccchHHHHHHHHHHHHHHHHHHCCCC
Q FD01875457_037 30 DMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLESGHETTASAKAVETAKLDAHYEKTGQVP 94 (106)
Q Consensus 30 Dl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~~~~~ktg~iP 94 (106)
.+..+....++|..+ +.+..|.+. ..+.|.|.. +.-+...-..+.++.+.++|...|-|+
T Consensus 191 ~l~~l~~~~~~~~~~-~~l~~l~~~---~~l~G~~~~-~~yiP~~y~~~q~~~v~~~~~~ng~I~ 250 (267)
T A0E4Z0_PARTE/3 191 SFLKLNKDLEIQNSQ-KICEQLLIT---KQIDGKIFS-GQYVSSRFLQNQEAQVKSFFDQNSYVE 250 (267)
T ss_pred eHHHHHHHcCCccch-HHHHHHHHc---CCceeEEEC-CEEecHHHHHHHHHHHHHHHHHcCCcc
No 13
>2N2U_A OR358; Structural Genomics, Protein NMR, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), Target OR358, PSI-Biology, Protein Structure Initiative, Unknown; NMR {Synthetic construct}
Probab=67.14 E-value=17 Score=26.58 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=0.0 Template_Neff=1.600
Q ss_pred HHHHHHHHCCCceEEEEeeecccchHHHHHHHHHHHHHHHHH
Q FD01875457_037 48 VTKLEKTYGKGNVKGIVLESGHETTASAKAVETAKLDAHYEK 89 (106)
Q Consensus 48 vrkL~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~~~~~k 89 (106)
||++|++||+..|.-. .|.|--+.--+.|+++|++-+++
T Consensus 18 vreiqeq~PkaTitrt---~g~ik~~a~tEeeAeriekel~k 56 (77)
T 2N2U_A 18 IREIREQWPKATVTRT---NGDIKLDAQTEKEAEKMEKAVKK 56 (77)
T ss_dssp HHHHHTTCTTSCEEEE---TTEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCeeEec---cCccccccccHHHHHHHHHHHHh
No 14
>6X62_LX Type IV secretion system unknown protein fragment; Secretion, T4SS, Dot, PROTEIN TRANSPORT;{Legionella pneumophila}
Probab=61.37 E-value=69 Score=30.82 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=0.0 Template_Neff=1.900
Q ss_pred EEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHH---HCC--CceEEEEeee-cccchHHHHHHHHHHHHHHH
Q FD01875457_037 14 VYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKT---YGK--GNVKGIVLES-GHETTASAKAVETAKLDAHY 87 (106)
Q Consensus 14 vY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~---~~~--~~V~g~Vi~~-g~~TT~~aK~~Et~~l~~~~ 87 (106)
|-+|.+++++.-.=-.++.=-.-||.|..-..+.|.+|.+. ||+ ..|+|..-.+ +..+-...-+.-...|.+|+
T Consensus 444 I~~v~vgnTiV~~vPfKFYFapGSSdLTPEIaqELDKLVeALkEFPELKLRIEGHTDSRGSsSSNlKLSQaRADAIKdYL 523 (579)
T 6X62_LX 444 IQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFL 523 (579)
T ss_pred ceeeeeCCeEEEEecceeecCCCCCCCChhhhHHHHHHHHHHHhCCCcEEEEEeecCCCCChHHHHHHHHHHHHHHHHHH
Q ss_pred HHHCCCCCCcccC
Q FD01875457_037 88 EKTGQVPEGNQKS 100 (106)
Q Consensus 88 ~ktg~iP~GN~ks 100 (106)
-..| ||+.|..+
T Consensus 524 IsKG-VPaSNI~A 535 (579)
T 6X62_LX 524 WANG-IAAKRLKA 535 (579)
T ss_pred HHcC-CChhhcee
No 15
>PF14452.10 ; Multi_ubiq ; Multiubiquitin
Probab=60.42 E-value=16 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred EEEEECCEEEEeeecchh
Q FD01875457_037 15 YKIEINGELYKYGKTDMN 32 (106)
Q Consensus 15 Y~I~ing~lyK~GKADl~ 32 (106)
|.|.|||+.|.+.+..++
T Consensus 1 ~~i~Vng~~~~~~~~~~t 18 (74)
T F4CXB8_PSEUX/2 1 MTIVINARERTVTDKELT 18 (74)
T ss_pred CEEEECCEEEEEECCeec
No 16
>PF18142.5 ; SLATT_fungal ; SMODS and SLOG-associating 2TM effector domain
Probab=54.53 E-value=21 Score=26.39 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred hhcCCCHHHHHHHHHHHH
Q FD01875457_037 36 KSSGLPTRLHQQVTKLEK 53 (106)
Q Consensus 36 ~SSGlPtRLhqQvrkL~k 53 (106)
+++|+|.|+-+.-+.|++
T Consensus 68 kg~g~P~R~~~~~~el~~ 85 (122)
T V2XS99_MONRO/2 68 RGSNEPELSIARTKDLEQ 85 (122)
T ss_pred cCCCCChHHHHHHHHHHH
No 17
>2MMV_B Cell division protein ZapA; ZapA, CELL CYCLE; NMR {Geobacillus stearothermophilus}
Probab=51.91 E-value=65 Score=21.05 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred EEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCc
Q FD01875457_037 15 YKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGN 59 (106)
Q Consensus 15 Y~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~ 59 (106)
+.|.|.|+.|.+- .|-+.-. --.+-..|.+.+..+++.+|...
T Consensus 12 i~i~I~g~~~~v~-~~~~e~~-~~~~~~~v~~~~~~~~~~~~~~~ 54 (86)
T 2MMV_B 12 VSVRIYGQDYTIV-GAESPAH-IRLVAAFVDDKMHEFSEKQPMLD 54 (86)
T ss_dssp EEEEETTEEEEEE-CCSCTTH-HHHHHHHHHHHHHHHHTTCSSSC
T ss_pred EEEEECCEEEEEe-cCCCHHH-HHHHHHHHHHHHHHHHHhCCCCC
No 18
>2HW4_A 14 kDa phosphohistidine phosphatase; phosphohistidine, phosphatase, phpt1, human, Structural Genomics, Structural Genomics Consortium, SGC, hydrolase; HET: FMT; 1.9A {Homo sapiens} SCOP: d.322.1.1, l.1.1.1
Probab=50.50 E-value=29 Score=26.29 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred EEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCceE
Q FD01875457_037 16 KIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVK 61 (106)
Q Consensus 16 ~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~ 61 (106)
.|.|-|.-..||+||.+.+. +-|++.||...|+
T Consensus 106 ~I~iyG~S~~yG~~d~~~~~-------------~il~~~yp~y~I~ 138 (144)
T 2HW4_A 106 KIHVYGYSMAYGPAQHAIST-------------EKIKAKYPDYEVT 138 (144)
T ss_dssp EEEEECCCTTTCBCCHHHHH-------------HHHHHHSTTSEEE
T ss_pred EEEEEEeccccCccchHhHH-------------HHHHHHCCCCEEE
No 19
>PF11900.12 ; DUF3420 ; Domain of unknown function (DUF3420)
Probab=46.53 E-value=35 Score=21.71 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred chhHhHhhcCCCHHHHHHHHHHH
Q FD01875457_037 30 DMNRVTKSSGLPTRLHQQVTKLE 52 (106)
Q Consensus 30 Dl~RvT~SSGlPtRLhqQvrkL~ 52 (106)
|||.+|-...||.-+-.||..||
T Consensus 1 dlD~itLEKeLP~ev~~~Ik~lR 23 (45)
T NPR3_ORYSJ/222 1 NLDNRYLEKRLPDDLYAKLKEFR 23 (45)
T ss_pred CCchhcccccCCHHHHHHHHHHh
No 20
>2L6R_A Head-to-tail joining protein W (GpW) from bacteriophage origin; gpW, atom by atom analysis, fast protein folding, downhill protein folding, folding simulations, VIRAL PROTEIN; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1
Probab=46.48 E-value=66 Score=20.77 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred EEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHH
Q FD01875457_037 13 GVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVT 49 (106)
Q Consensus 13 gvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvr 49 (106)
++-+|.++|+-.+|..+|++.+. .+..+|.+++.
T Consensus 22 ~v~~v~~~~~~v~~~~~~~~~L~---~~i~~le~~~~ 55 (62)
T 2L6R_A 22 RVATVQKDGRRVEFTATSVSDLK---KYIAELEVQTG 55 (62)
T ss_dssp CCEEEEETTEEEEECGGGHHHHH---HHHHHHHHHTT
T ss_pred CeEEEEECCEEEEEEeCCHHHHH---HHHHHHHHHHc
No 21
>PF20393.2 ; Pro_CA_2 ; Putative carbonic anhydrase
Probab=45.67 E-value=80 Score=21.06 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHHHHHHCCCceEEEEeee-cccc
Q FD01875457_037 42 TRLHQQVTKLEKTYGKGNVKGIVLES-GHET 71 (106)
Q Consensus 42 tRLhqQvrkL~k~~~~~~V~g~Vi~~-g~~T 71 (106)
..|-+.+..|++.+|+..|.|.++.. +.+.
T Consensus 91 ~~l~~~~~~l~~~~p~~~V~~~~~~~~g~v~ 121 (124)
T F0TBI0_METLA/1 91 KQIIESVERIKELYSACDVVGLWVDDDFNVQ 121 (124)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCcEE
No 22
>1MK0_A Intron-associated endonuclease 1; alpha/beta fold CATALYTIC DOMAIN DNA-BINDING SURFACE, HYDROLASE; HET: CIT; 1.6A {Enterobacteria phage T4} SCOP: d.226.1.1
Probab=45.14 E-value=1e+02 Score=18.11 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred eEEEEEEEC-CEEEEeeecchhHhHhhcCCCHHHHHHHHHHH-------------HHHCCCceEEEEeeecccchHHHHH
Q FD01875457_037 12 FGVYKIEIN-GELYKYGKTDMNRVTKSSGLPTRLHQQVTKLE-------------KTYGKGNVKGIVLESGHETTASAKA 77 (106)
Q Consensus 12 fgvY~I~in-g~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~-------------k~~~~~~V~g~Vi~~g~~TT~~aK~ 77 (106)
.|||.|.-. ....-+|.+ ..+. .|+.+..+.++ ..++ ..+.-.+++....+...+..
T Consensus 3 ~gvy~~~~~~~~~~yiG~t--~~l~------~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 73 (97)
T 1MK0_A 3 SGIYQIKNTLNNKVYVGSA--KDFE------KRWKRHFKDLEKGCHSSIKLQRSFNKHG-NVFECSILEEIPYEKDLIIE 73 (97)
T ss_dssp CEEEEEEETTTCCEEEEEE--SSHH------HHHHHHHHHHHHTCCSCHHHHHHHHHHS-SCEEEEEEEECCCCHHHHHH
T ss_pred ceEEEEEECCCCeEEEEee--CCHH------HHHHHHHHHHHcCCCCCHHHHHHHHHhC-CcEEEEEEEeecCCHHHHHH
Q ss_pred HHHHHHHHH--HHH-HCCCCCC
Q FD01875457_037 78 VETAKLDAH--YEK-TGQVPEG 96 (106)
Q Consensus 78 ~Et~~l~~~--~~k-tg~iP~G 96 (106)
.|...+..+ ... ....+.|
T Consensus 74 ~e~~~~~~~~~~~~~~n~~~~~ 95 (97)
T 1MK0_A 74 RANFWIKELNSKINGYNIADAT 95 (97)
T ss_dssp HHHHHHHHTTTTTSSSCCSSCC
T ss_pred HHHHHHHHhhccccCccccCCC
No 23
>1YWL_A Hypothetical UPF0213 protein EF2693; Alpha and beta, Structural Genomics, Northeast Structural Genomics Consortium (NESG), Protein Structure Initiative (PSI), UNKNOWN FUNCTION; NMR {Enterococcus faecalis}
Probab=41.16 E-value=1.4e+02 Score=18.69 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred ceEEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCC--CceEEEEeee-cccchHHHHHHHHHH
Q FD01875457_037 11 DFGVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGK--GNVKGIVLES-GHETTASAKAVETAK 82 (106)
Q Consensus 11 nfgvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~--~~V~g~Vi~~-g~~TT~~aK~~Et~~ 82 (106)
.|.||.+.-++..+-+|. ++.|..|+.++.+.....+.. ..-...++.. ...+-++|.+.|...
T Consensus 6 ~~~vY~l~~~~~~~yiG~--------t~~l~~r~~~h~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~E~~~ 72 (96)
T 1YWL_A 6 SHYFYVLLCQDGSFYGGY--------TTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAF 72 (96)
T ss_dssp SEEEEEEECTTCCCEEEE--------ESCHHHHHHHHHHHHSCSSCSSCCSSCCEEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCCEEEEE--------cCCHHHHHHHHHcCCCchhhccccCCCeEEEEEEEeCCHHHHHHHHHHH
No 24
>PF14268.10 ; YoaP ; YoaP-like
Probab=39.82 E-value=74 Score=19.77 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred CcccceEEEEEEECCEEE
Q FD01875457_037 7 GATGDFGVYKIEINGELY 24 (106)
Q Consensus 7 ~a~gnfgvY~I~ing~ly 24 (106)
++..-||+|-|..||++.
T Consensus 15 ~~p~Pyg~f~v~~~G~~l 32 (44)
T R6QV42_9FIRM/2 15 NAPAPFTAFSLFYQGRFI 32 (44)
T ss_pred cCCCcceeEEEEECCEEe
No 25
>2JV8_A Uncharacterized protein NE1242; solution structure, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; NMR {Nitrosomonas europaea ATCC 19718}
Probab=39.24 E-value=37 Score=23.48 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred EEEEECCEEEEeeecc-hhHhHhhcCCCHHHHHHHHHHHHH
Q FD01875457_037 15 YKIEINGELYKYGKTD-MNRVTKSSGLPTRLHQQVTKLEKT 54 (106)
Q Consensus 15 Y~I~ing~lyK~GKAD-l~RvT~SSGlPtRLhqQvrkL~k~ 54 (106)
|+|.|||+..-+..-+ -.++. |..||-+-..-++.|.+.
T Consensus 19 ~~v~IDG~~l~v~~~~~~G~y~-s~~~py~~~~sl~dlar~ 58 (73)
T 2JV8_A 19 TSLTINGKEISYVHDAVKNKWS-SRYLPYTQYDSLLDLARA 58 (73)
T ss_dssp EEEEETTEECCCCCCSSSCCCC-CTTSTTCCCSCHHHHHHH
T ss_pred CeEEECCEEeeEEEeCCCCeEE-eCccCCccCCCHHHHHHH
No 26
>1ZG2_A Hypothetical UPF0213 protein BH0048; BhR2, Autostructure, Northeast Structural Genomics Consortium, PSI, Protein Structure Initiative, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION; NMR {Bacillus halodurans}
Probab=38.29 E-value=1.7e+02 Score=19.39 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred ceEEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeee-cccchHHHHHHHHH
Q FD01875457_037 11 DFGVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLES-GHETTASAKAVETA 81 (106)
Q Consensus 11 nfgvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~-g~~TT~~aK~~Et~ 81 (106)
.|.||.+.-.+..+-+|- +..|..|+.+.-+.....+-.......++.. ...+-.+|...|..
T Consensus 7 ~~~vYil~~~~~~~YiG~--------T~~l~~R~~~h~~~~~~~~t~~~~~~~lv~~~~~~~~~~A~~~E~~ 70 (107)
T 1ZG2_A 7 NHYVYILECKDGSWYTGY--------TTDVDRRIKKHASGKGAKYTRGRGPFRLVATWAFPSKEEAMRWEYE 70 (107)
T ss_dssp CEEEEEEECTTSCEEEEE--------ECCHHHHHHHHHHHTTCCSCCCCSSCEEEEEEEESCHHHHHHHHHH
T ss_pred cEEEEEEEeCCCeEEEEE--------eCCHHHHHHHHHCCCCccccccCCCeEEEEEEEcCCHHHHHHHHHH
No 27
>1YD6_B UvrC; DNA BINDING PROTEIN; HET: SO4; 2.0A {Bacillus caldotenax}
Probab=36.73 E-value=1.5e+02 Score=17.83 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CCcccceEEEEEEE-CCEEEEeeecchhHhHhhcCCCHHHHHHHHHH-----HHHHCCCceEEEEeeecccchHHHHHHH
Q FD01875457_037 6 NGATGDFGVYKIEI-NGELYKYGKTDMNRVTKSSGLPTRLHQQVTKL-----EKTYGKGNVKGIVLESGHETTASAKAVE 79 (106)
Q Consensus 6 n~a~gnfgvY~I~i-ng~lyK~GKADl~RvT~SSGlPtRLhqQvrkL-----~k~~~~~~V~g~Vi~~g~~TT~~aK~~E 79 (106)
.......|||.|.- ++++.-+|.+. +|-.|+....+.. .+. ..-...|......+...|...|
T Consensus 10 ~~~p~~~Gvy~~~~~~~~~~yvG~t~--------~l~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e 78 (99)
T 1YD6_B 10 AVLPEQPGCYLMKDKHGTVIYVGKAK--------SLKERVRSYFTGTHDGKTQRL---VEEIADFEYIVTSSNAEALILE 78 (99)
T ss_dssp GGCCSSCEEEEEECTTSCEEEEEEES--------SHHHHHHHTTSSCCCHHHHHH---HHHCCEEEEEECSSHHHHHHHH
T ss_pred hcCCCCCcEEEEECCCCcEEEEEecc--------cHHHHHHHhccCCCCchHHHH---HHhceeEEEEEcCCHHHHHHHH
Q ss_pred HHHHHHHHHHHCCCCCCcccCCCCCC
Q FD01875457_037 80 TAKLDAHYEKTGQVPEGNQKSYKPKG 105 (106)
Q Consensus 80 t~~l~~~~~ktg~iP~GN~ks~kp~~ 105 (106)
...++.| -|+-|........
T Consensus 79 ~~li~~~------~p~~n~~~~~~~~ 98 (99)
T 1YD6_B 79 MNLIKKH------DPKYNVMLKDDKS 98 (99)
T ss_dssp HHHHHHH------CCHHHHHTCC---
T ss_pred HHHHHHh------CCcccccccCCCC
No 28
>PF07067.15 ; DUF1340 ; Protein of unknown function (DUF1340)
Probab=35.06 E-value=36 Score=29.53 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred cCCCHHHHHHHHH----HHHHHCCCceEEEEeeecccchHHHHHHHHH
Q FD01875457_037 38 SGLPTRLHQQVTK----LEKTYGKGNVKGIVLESGHETTASAKAVETA 81 (106)
Q Consensus 38 SGlPtRLhqQvrk----L~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~ 81 (106)
+|||.-||||++. |++.||+ .+...|-+...-+-.+|...-++
T Consensus 109 AGLt~ELfqRl~~E~~aLR~~hp~-~~~~~ImevK~Cd~~qA~ki~qa 155 (236)
T O34054_BPO12/1 109 AGLTEELFLQYRNEIQELRAAHPN-CFANYIMEVKGCSNQQAKTICTA 155 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCcc-hHHHHHHHhhCCCHHHHHHHHHH
No 29
>PF12321.12 ; DUF3634 ; Protein of unknown function (DUF3634)
Probab=34.97 E-value=55 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred CEEEEeeecchhHhHhhcCCCHHHHHHHHHH
Q FD01875457_037 21 GELYKYGKTDMNRVTKSSGLPTRLHQQVTKL 51 (106)
Q Consensus 21 g~lyK~GKADl~RvT~SSGlPtRLhqQvrkL 51 (106)
|.++=++ .+--++.=|.++|...+|+||+.
T Consensus 60 G~I~~~~-~~~~~L~FS~~ip~~~~QriRN~ 89 (104)
T Q07YP9_SHEFN/8 60 CTVRAEK-SGDVRLHVSANIGDNLIQQIRNQ 89 (104)
T ss_pred EEEEEEe-CCceEEEEeCcCCHHHHHHHHHh
No 30
>8FJE_B E8; De novo protein, Hallucination, repeat proteins, central pockets, pseudocyclic proteins; 3.0A {synthetic construct}
Probab=34.93 E-value=54 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHCCCCC
Q FD01875457_037 69 HETTASAKAVETAKLDAHYEKTGQVPE 95 (106)
Q Consensus 69 ~~TT~~aK~~Et~~l~~~~~ktg~iP~ 95 (106)
.|.|--..+.|++.||+|+...|.+|+
T Consensus 34 eietmpleelerkalqdylrrygtlpe 60 (145)
T 8FJE_B 34 EIETMPLEELERKALQDYLRRYGTLPE 60 (145)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHSCCCT
T ss_pred HHccCCHHHHHHHHHHHHHHHhCCCCH
No 31
>1T3U_C conserved hypothetical protein; T1445, NYSGXRC, UNKNOWN ORF, COG3027, PSI, Protein Structure Initiative, New York SGX Research Center for Structural; HET: MSE; 2.5A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1
Probab=34.74 E-value=1.6e+02 Score=19.84 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred EEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCc
Q FD01875457_037 15 YKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGN 59 (106)
Q Consensus 15 Y~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~ 59 (106)
+.|.|.|+-|.+ ++|.+.--.-..+-..+..++.+++..+|...
T Consensus 7 i~i~I~g~~~~l-~~~~~~e~~~~~~a~~v~~~~~~i~~~~~~~~ 50 (104)
T 1T3U_C 7 LTVQILDKEYCI-NCPDDERANLESAARYLDGKMREIRSSGKVIG 50 (104)
T ss_dssp EEEECSSCEEEE-CCCGGGHHHHHHHHHHHHHHHHHHHTTTSSCS
T ss_pred EEEEECCEEEEE-eCChhHHHHHHHHHHHHHHHHHHHHHcCCCCC
No 32
>PF18215.5 ; Rtt106_N ; Histone chaperone Rtt106 N-terminal domain
Probab=34.71 E-value=62 Score=20.50 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred CCHHHHHHHHHHHHHHCC
Q FD01875457_037 40 LPTRLHQQVTKLEKTYGK 57 (106)
Q Consensus 40 lPtRLhqQvrkL~k~~~~ 57 (106)
||.-|.++|..|-..+|.
T Consensus 6 LP~~Lr~~V~~li~~~P~ 23 (47)
T G0WD16_NAUDC/4 6 LPEELSIKIKRITSVIPQ 23 (47)
T ss_pred CCHHHHHHHHHHHHhChH
No 33
>PF05164.17 ; ZapA ; Cell division protein ZapA
Probab=34.29 E-value=1.6e+02 Score=19.47 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred EEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCc
Q FD01875457_037 16 KIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGN 59 (106)
Q Consensus 16 ~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~ 59 (106)
.|.|.|+.|++-=.+ +.-- -..+-..+.++++.+...+|...
T Consensus 2 ~i~I~g~~~~l~~~~-~~~~-~~~~a~~v~~~~~~~~~~~~~~~ 43 (85)
T Q2LRA1_SYNAS/5 2 HIKILGQEFTVLSDS-GDEH-VESVMEYINKKVMELENKFSNAS 43 (85)
T ss_pred eEeeCCeEEEEeCCC-CHHH-HHHHHHHHHHHHHHHHHHcCCCC
No 34
>PF05120.16 ; GvpG ; Gas vesicle protein G
Probab=34.23 E-value=2.4e+02 Score=19.38 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred hHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeeecccchHHHHHHHHHHHHHH
Q FD01875457_037 32 NRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLESGHETTASAKAVETAKLDAH 86 (106)
Q Consensus 32 ~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~~~ 86 (106)
+.+-+..--|..+.+++..|+.. .+.|.||-++.++.|...+...
T Consensus 21 ~~ae~E~~d~~~i~~~L~eL~~~----------~e~GeIseeEy~~~e~~Ll~rl 65 (72)
T Q2JJS5_SYNJB/2 21 ERAEAQLDSKENLQKELTALQIQ----------LDLGEIDEETYARREEEILLAL 65 (72)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH----------HHcCCCCHHHHHHHHHHHHHHH
No 35
>8CSS_X 28S ribosomal protein S29, mitochondrial; Ribonucleoprotein complex Mitochondria Biogenesis, RIBOSOME; HET: MG, ATP, GDP, SAM, NAD, MA6; 2.36A {Homo sapiens}
Probab=32.43 E-value=49 Score=28.17 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CEEEEeeecchhHhHhhcCCCHHHHHHHHHHHH
Q FD01875457_037 21 GELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEK 53 (106)
Q Consensus 21 g~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k 53 (106)
|+.|.+-+.|++++-. .|||.++.+|.+-+.+
T Consensus 65 g~~y~~~~~~~~~~~~-~glp~~~~~~~~~~~~ 96 (398)
T 8CSS_X 65 GQHYNISPQDLETVFP-HGLPPRFVMQVKTFSE 96 (398)
T ss_dssp TCEEEECHHHHHHHCS-SCSCHHHHHHHHHHTS
T ss_pred CceeecCHHHHHhhcc-CCCCHHHHHHHHhhcc
No 36
>PF01949.20 ; DUF99 ; Protein of unknown function DUF99
Probab=31.24 E-value=50 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EEECCEEEE-eeecchhHhHhhcCCCH
Q FD01875457_037 17 IEINGELYK-YGKTDMNRVTKSSGLPT 42 (106)
Q Consensus 17 I~ing~lyK-~GKADl~RvT~SSGlPt 42 (106)
|.+||..+- +|-||+.++-..+++|+
T Consensus 68 ilvdG~g~~g~giad~~~lg~~~~~P~ 94 (177)
T Y431_NANEQ/3-1 68 IILYGITFAGFNIADVELIYKNLGLPI 94 (177)
T ss_pred EEEcCCcccccceeCHHHHHHHHCCCE
No 37
>PF09621.14 ; LcrR ; Type III secretion system regulator (LcrR)
Probab=30.67 E-value=1.8e+02 Score=22.29 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred chhHhHhhcCCCH---HHHHHHHHHHHHHCC-CceEEEEeee-cccchHHHHHHHHHHHHHHHHHHC
Q FD01875457_037 30 DMNRVTKSSGLPT---RLHQQVTKLEKTYGK-GNVKGIVLES-GHETTASAKAVETAKLDAHYEKTG 91 (106)
Q Consensus 30 Dl~RvT~SSGlPt---RLhqQvrkL~k~~~~-~~V~g~Vi~~-g~~TT~~aK~~Et~~l~~~~~ktg 91 (106)
|+.|.....||+. +|-.-++.|.+..|. ..|.|.|... +.. ..+++|..+|...|
T Consensus 51 ~f~r~~~~~gl~~a~~~l~~ll~~l~~~~~~i~~vrG~v~~~~~~~-------l~r~RL~~~~~~~G 110 (138)
T G3XCW4_PSEAE/3 51 MLRRRQARSGLANPFAALYLLAEATLDTLGPRQRLYGKVLALAGSP-------LPGERMARFYRRWT 110 (138)
T ss_pred EEEEcCCCCCCCcHHHHHHHHHHHHHHhcccccEEEEEEeccCCCC-------CcHHHHHHHHHHhh
No 38
>PF18472.5 ; HP1451_C ; HP1451 C-terminal domain
Probab=30.35 E-value=1e+02 Score=21.94 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred HHHHHHHHHHHHCCCceE
Q FD01875457_037 44 LHQQVTKLEKTYGKGNVK 61 (106)
Q Consensus 44 LhqQvrkL~k~~~~~~V~ 61 (106)
++=.+.+||+.||+.-|.
T Consensus 36 ~~IAl~~LR~~fP~KYV~ 53 (67)
T D1B2U1_SULD5/2 36 IKIALEVLRAEFPEKYVG 53 (67)
T ss_pred HHHHHHHHHHHCCCCeEE
No 39
>3HNW_B uncharacterized protein; coiled-coil, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function; HET: MSE, GOL; 2.196A {Eubacterium eligens}
Probab=30.31 E-value=1.6e+02 Score=21.42 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred EEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHH--HCCCc
Q FD01875457_037 15 YKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKT--YGKGN 59 (106)
Q Consensus 15 Y~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~--~~~~~ 59 (106)
+.|.|.|..|.+- +|-+.-- --.+-..+++.++++++. +|...
T Consensus 10 v~i~I~g~~y~l~-~~~~~e~-l~~ia~~vn~~i~~~~~~~~~~~~~ 54 (138)
T 3HNW_B 10 AEVILGGKVIKLG-GYESEEY-LQRVASYINNKITEFNKEESYRRMS 54 (138)
T ss_dssp CEEEETTEEEECT-TCSCHHH-HHHHHHHHHHHHHHHHTCHHHHTSC
T ss_pred EEEEECCEEeEeC-CCCCHHH-HHHHHHHHHHHHHHHhhhccccCCC
No 40
>3SEO_A VopL C terminal domain protein; alpha helix, STRUCTURAL PROTEIN; 2.305A {Vibrio parahaemolyticus}
Probab=28.72 E-value=1e+02 Score=26.96 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=0.0 Template_Neff=3.700
Q ss_pred HHHHHHHHHHHHCCCceEEEEeee-cccchHHHHHHHHHHHHHHHHHHCCCCC
Q FD01875457_037 44 LHQQVTKLEKTYGKGNVKGIVLES-GHETTASAKAVETAKLDAHYEKTGQVPE 95 (106)
Q Consensus 44 LhqQvrkL~k~~~~~~V~g~Vi~~-g~~TT~~aK~~Et~~l~~~~~ktg~iP~ 95 (106)
|-.|+...-=.--..++.|.|.+. +..|+.++-+.+-.++|+|+..-..+|.
T Consensus 25 la~~~Sdyiv~a~~vDw~~~~~eq~g~l~~~~~le~~~~yiqay~~eIk~ypd 77 (241)
T 3SEO_A 25 LANNLADYLFQAADIDWHQVISEKTRGLTTEEMAKSEHRYVQAFCREILKYPD 77 (241)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHCC---CHHHHHTCSSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCch
No 41
>4P1M_B Cell division protein ZapA; Cell division, FtsZ filament bundling, coiled-coil, CELL CYCLE; 1.95A {Escherichia coli} SCOP: d.244.1.0
Probab=28.27 E-value=2.5e+02 Score=20.12 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCc
Q FD01875457_037 15 YKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGN 59 (106)
Q Consensus 15 Y~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~ 59 (106)
+.|.|.|+.|.+-=.|-+.-. -..+-.-+.+++.++++.+|...
T Consensus 20 i~v~I~g~~y~l~~~~~~e~~-l~~aa~~v~~~l~~~~~~~~~~~ 63 (123)
T 4P1M_B 20 VDIQIFGRSLRVNCPPDQRDA-LNQAADDLNQRLQDLKERTRVTN 63 (123)
T ss_dssp EEEEETTEEEEEEECGGGHHH-HHHHHHHHHHHHHHHHTTC-CCC
T ss_pred EEEEECCEEEEEeCChHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
No 42
>3TQM_A Ribosome-associated factor Y; Protein synthesis, PROTEIN BINDING; HET: MSE, SO4; 2.45A {Coxiella burnetii} SCOP: d.204.1.0
Probab=27.70 E-value=2.2e+02 Score=18.12 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred EEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHH
Q FD01875457_037 16 KIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKT 54 (106)
Q Consensus 16 ~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~ 54 (106)
.+.+.|..+..-..+.|-.+.-..+-.+|.+||+++...
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~ai~~~~~~l~~~l~k~~~k 91 (96)
T 3TQM_A 53 NVKLPGSTINAQAESDDMYKTVDLLMHKLETQLSKYKAK 91 (96)
T ss_dssp EEEETTEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCeEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
No 43
>PF19678.3 ; DUF6180 ; Family of unknown function (DUF6180)
Probab=27.25 E-value=2.4e+02 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=0.0 Template_Neff=3.600
Q ss_pred cceEEEEEEECCEE--------EEeeecchhHhHhhcCCCHHHHHHHHH
Q FD01875457_037 10 GDFGVYKIEINGEL--------YKYGKTDMNRVTKSSGLPTRLHQQVTK 50 (106)
Q Consensus 10 gnfgvY~I~ing~l--------yK~GKADl~RvT~SSGlPtRLhqQvrk 50 (106)
|.|.+|-|-+|++. |. +|+++.++.. |.|.-|++
T Consensus 57 gs~vvyCIav~~~Tv~VVQ~iDY~-~k~~~~~~ad------~v~aal~~ 98 (101)
T A0A2U8VY19_9HY 57 GAIIAYCIAAGDKTVYVVQGIGYR-AGTAATAFAD------KAHADLLK 98 (101)
T ss_pred ceEEEEEEEeCCEEEEEEEeeecC-CCchHHHHHH------HHHHHHHH
No 44
>5OL8_C Transcription elongation factor, mitochondrial; Elongation Factor, Mitochondria, Resolvase, RNA Polymerase, TRANSCRIPTION; HET: GOL; 1.9A {Homo sapiens}
Probab=26.90 E-value=4.7e+02 Score=21.30 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred ceEEEEEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCceEEEEeee
Q FD01875457_037 11 DFGVYKIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGNVKGIVLES 67 (106)
Q Consensus 11 nfgvY~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~ 67 (106)
+++.-.+..+.++.-++..|++....+.-.|..+.+.+..+.+..|..++ .|+|.
T Consensus 130 nla~~~l~~~~~i~~W~~~~l~~~~~~~~~~~~~~~~~~~~~~~lp~~d~--~viE~ 184 (319)
T 5OL8_C 130 RIAWAHLDRKLTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADF--YVLEK 184 (319)
T ss_dssp CEEEEEEETTCBEEEEEECCCCCCSTTCCCHHHHHHHHHHHHTTSCCCSE--EEEEE
T ss_pred cEEEEEeCCCCeEEEeEecchhHHcCCCCCHHHHHHHHHHHHHhCCCCCE--EEEEc
No 45
>PF20941.1 ; DUF6848 ; Domain of unknown function (DUF6848)
Probab=25.11 E-value=2.1e+02 Score=19.68 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred EEEEEEC---------CEEE---EeeecchhHhHhhcCCCHHHHHHHHHHHHH
Q FD01875457_037 14 VYKIEIN---------GELY---KYGKTDMNRVTKSSGLPTRLHQQVTKLEKT 54 (106)
Q Consensus 14 vY~I~in---------g~ly---K~GKADl~RvT~SSGlPtRLhqQvrkL~k~ 54 (106)
||+|.+. +..| +-+++++++....+.- ........=|..+
T Consensus 8 v~~i~v~~~~~~~~~~~~~f~fr~P~~~~~~~~~~~~~~-~~~~a~~~ll~~c 59 (99)
T A0A416RDN7_9FI 8 VYRVGATIEVDDETEKNVEFFFKRPSTASYDRYVKTTAQ-GATKALKVFLFDN 59 (99)
T ss_pred eEEEEeEeecCCCcceeEEEEEeCCCHHHHHHHHHHHcc-CHHHHHHHHHHhh
No 46
>7BR2_C Lipolytic enzyme, G-D-S-L family; gut microbe, diltiazem, drug metabolism, SGNH, GDSL, serine esterase, HYDROLASE; 2.33A {Bacteroides thetaiotaomicron}
Probab=24.60 E-value=3.2e+02 Score=22.86 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred EEEEEEECCEEEEeeecchhHhHhhcCCC----HHHHHHHHHHHHH
Q FD01875457_037 13 GVYKIEINGELYKYGKTDMNRVTKSSGLP----TRLHQQVTKLEKT 54 (106)
Q Consensus 13 gvY~I~ing~lyK~GKADl~RvT~SSGlP----tRLhqQvrkL~k~ 54 (106)
|.|++.|||+. +|.+....+.+--.|+ +-..+|-++|++.
T Consensus 312 G~y~l~idg~~--~~~~~~~~l~~Gv~l~~~~~~p~~~~a~~~~~~ 355 (450)
T 7BR2_C 312 GQYKLLIDDQE--IGTWDAADLAKGINLAAESKTPQYQQALTIMHL 355 (450)
T ss_dssp SEEEEEETTEE--EEEEEHHHHHHCEEGGGCTTSHHHHHHHHHHHH
T ss_pred CeEEEEECCEE--EEEEEHHHHHcCcchhhcCCCHHHHHHHHHHHH
No 47
>PF15331.10 ; TP53IP5 ; Cellular tumour antigen p53-inducible 5
Probab=23.52 E-value=48 Score=28.49 Aligned_cols=7 Identities=71% Similarity=1.369 Sum_probs=0.0 Template_Neff=3.500
Q ss_pred CCCHHHH
Q FD01875457_037 39 GLPTRLH 45 (106)
Q Consensus 39 GlPtRLh 45 (106)
|||||+|
T Consensus 185 GLPtRIH 191 (218)
T G1SWJ9_RABIT/2 185 GLPTRIR 191 (218)
T ss_pred CCCcccc
No 48
>PF07067.15 ; DUF1340 ; Protein of unknown function (DUF1340)
Probab=22.34 E-value=1.4e+02 Score=26.13 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred hhHhHhhcCCCHHHHHHHHH----HHHHHCCCceEEEEeeecccchHHHHHHHHHHHHHHHHHHCCCC
Q FD01875457_037 31 MNRVTKSSGLPTRLHQQVTK----LEKTYGKGNVKGIVLESGHETTASAKAVETAKLDAHYEKTGQVP 94 (106)
Q Consensus 31 l~RvT~SSGlPtRLhqQvrk----L~k~~~~~~V~g~Vi~~g~~TT~~aK~~Et~~l~~~~~ktg~iP 94 (106)
|..--+-+|||.-|||+++. |++.||+ .+...|-+...-+-.+|..+-++-=.-|.+...--|
T Consensus 1 m~~~y~~AGLt~ELfqRl~~E~~aLr~~h~~-~~~~~imevK~C~~~qA~ki~qa~n~v~~Er~~LsP 67 (236)
T O34054_BPO12/1 1 MSGKYNYAGLTKELHQRLVFEFNALKEKHPR-TFTHHIMKTKQCNRQYARKYCQRFDKVIKERSKLSF 67 (236)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHCCc-hHHHHHHhhhCCCHHHHHHHHHHHHHHHHhccCCCh
No 49
>8A50_B Heat shock factor 2-binding protein; Complex, RECOMBINATION; HET: PO4; 1.484A {N/A}
Probab=22.07 E-value=93 Score=17.18 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred EEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCC
Q FD01875457_037 23 LYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGK 57 (106)
Q Consensus 23 lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~ 57 (106)
.....|+|+.|++ ..+..|+...|+
T Consensus 2 ~~~v~k~dl~~l~----------~e~~~lk~~lpk 26 (32)
T 8A50_B 2 FVKVRKKDLERLT----------TEVMQIRDFLPR 26 (32)
T ss_dssp EEEEEHHHHHHHH----------HHHHHHHTTHHH
T ss_pred CccccHHHHHHHH----------HHHHHHHHHHHH
No 50
>8FJE_B E8; De novo protein, Hallucination, repeat proteins, central pockets, pseudocyclic proteins; 3.0A {synthetic construct}
Probab=21.79 E-value=1.3e+02 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=0.0 Template_Neff=1.000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHCCCCC
Q FD01875457_037 69 HETTASAKAVETAKLDAHYEKTGQVPE 95 (106)
Q Consensus 69 ~~TT~~aK~~Et~~l~~~~~ktg~iP~ 95 (106)
.|.|--..+.|+..|..|+...|.+|+
T Consensus 90 eidtmpleelerealknylrrygslpp 116 (145)
T 8FJE_B 90 EIDTMPLEELEREALKNYLRRYGSLPP 116 (145)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHSCCCCH
T ss_pred HhccCCHHHHHHHHHHHHHHHhCCCCH
No 51
>PF10929.12 ; DUF2811 ; Protein of unknown function (DUF2811)
Probab=21.70 E-value=2e+02 Score=19.85 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=0.0 Template_Neff=4.500
Q ss_pred cCCCHHHHHHHHHHHHHHCC
Q FD01875457_037 38 SGLPTRLHQQVTKLEKTYGK 57 (106)
Q Consensus 38 SGlPtRLhqQvrkL~k~~~~ 57 (106)
+.+|.-||+.++..-+.+|+
T Consensus 4 ~EIPe~L~~~l~~fle~hP~ 23 (57)
T K8GIF2_9CYAN/6 4 AEIPEDLYDSVSRYLDSHAD 23 (57)
T ss_pred ccCCHHHHHHHHHHHHHCCC
No 52
>PF19859.3 ; DUF6333 ; Family of unknown function (DUF6333)
Probab=21.30 E-value=2.4e+02 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred hcCCCHHHHHHHHHHHHHHCCCceEEEEeee-cccchH
Q FD01875457_037 37 SSGLPTRLHQQVTKLEKTYGKGNVKGIVLES-GHETTA 73 (106)
Q Consensus 37 SSGlPtRLhqQvrkL~k~~~~~~V~g~Vi~~-g~~TT~ 73 (106)
..|+-+-|..|.+.|+++||+..|.|.+-.+ +..=|+
T Consensus 95 ~dg~~~pl~~e~~al~er~PdArIVg~~~~d~g~~y~e 132 (237)
T B5H843_STRE2/2 95 DDGNSWPVLEQVRNLAERFPGAKIIGSATVDRGETHEE 132 (237)
T ss_pred cCCCCccHHHHHHHHHHHCCCCEEEEEEEEcCCCccce
No 53
>PF05005.19 ; Ocnus ; Janus/Ocnus family (Ocnus)
Probab=21.00 E-value=1.8e+02 Score=20.14 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred EEEECCEEEEeeecchhHhHhhcCCCHHHHHHHHHHHHHHCCCc
Q FD01875457_037 16 KIEINGELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEKTYGKGN 59 (106)
Q Consensus 16 ~I~ing~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k~~~~~~ 59 (106)
.|.|-|.-.-||+||.+.+. +-|++.||+.+
T Consensus 74 ~i~i~G~S~~fG~~d~~~~~-------------~il~~~~p~~~ 104 (104)
T A9UQP9_MONBE/5 74 EIFVYGYSMAYGQGDHALAV-------------DMLRKAYPSYP 104 (104)
T ss_pred eEEEEEeccccCCCCHHHHH-------------HHHHHHCCCCC
No 54
>PF11934.12 ; DUF3452 ; Domain of unknown function (DUF3452)
Probab=20.99 E-value=2.6e+02 Score=20.46 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred hhHh--------HhhcCCCHHHHHHHHHHHHHH
Q FD01875457_037 31 MNRV--------TKSSGLPTRLHQQVTKLEKTY 55 (106)
Q Consensus 31 l~Rv--------T~SSGlPtRLhqQvrkL~k~~ 55 (106)
|.++ ..-.++|.+...++++|++.|
T Consensus 29 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 61 (136)
T K3ZH52_SETIT/7 29 MQQLGLKIEKILESRYGRDWEGQLELKQLEGLV 61 (136)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
No 55
>6NEQ_g DAP3 protein; Human mitochondrial translation Initiation Factor 3, RIBOSOMAL PROTEIN; 3.32A {Bos taurus}
Probab=20.17 E-value=1.4e+02 Score=23.51 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CEEEEeeecchhHhHhhcCCCHHHHHHHHHHHH
Q FD01875457_037 21 GELYKYGKTDMNRVTKSSGLPTRLHQQVTKLEK 53 (106)
Q Consensus 21 g~lyK~GKADl~RvT~SSGlPtRLhqQvrkL~k 53 (106)
|..|.+.+++++.+. ..|+|.++.+.+..+..
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 49 (351)
T 6NEQ_g 18 GQHYNISIQELKTVF-PHGLPPRFVMQVKTFNE 49 (351)
T ss_dssp TCEEECCHHHHHHHC-CSCCCHHHHHHHHHHSS
T ss_pred CceEecCHHHHHhhc-cCCCCHHHHHHHHhhcc
No 56
>PF09712.14 ; PHA_synth_III_E ; Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=20.12 E-value=2.2e+02 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred hhHhHhhcCCCHH-----HHHHHHHHHHH
Q FD01875457_037 31 MNRVTKSSGLPTR-----LHQQVTKLEKT 54 (106)
Q Consensus 31 l~RvT~SSGlPtR-----LhqQvrkL~k~ 54 (106)
++++-.+.|+||| |+++|..|++.
T Consensus 265 ~e~~l~~~~lPtr~e~d~l~~~l~~L~r~ 293 (298)
T L0GYM6_9GAMM/1 265 VDEVLGAMNMPTRSELRTLQDRLQESRRE 293 (298)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHH