Query FD01543195_01066 type IV secretion protein Rhs
Match_columns 91
No_of_seqs 122 out of 403
Neff 5.62729
Searched_HMMs 86581
Date Mon Feb 26 20:36:49 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/8111521.hhr -oa3m ../results/8111521.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8H8B_A Putative Rhs-family pro 99.3 2.5E-11 2.9E-16 104.2 7.2 74 2-91 1304-1382(1402)
2 8H8C_C C-terminal peptide from 98.7 1.2E-07 1.4E-12 67.8 5.9 55 27-90 169-223 (250)
3 PF14414.10 ; WHH ; A nuclease 97.7 0.00018 2.1E-09 34.4 3.5 1 57-57 12-12 (43)
4 8BD1_A Type IV secretion prote 95.7 0.12 1.4E-06 31.9 6.2 75 1-91 35-114 (134)
5 PF12639.11 ; Colicin-DNase ; D 94.4 0.16 1.8E-06 26.9 3.5 34 47-86 64-97 (97)
6 5XGG_F Unconventional myosin I 31.0 31 0.00036 15.9 0.1 6 54-59 60-65 (66)
7 7VRX_C Aminotransferase; auxin 22.5 2.6E+02 0.0031 21.0 3.6 35 24-60 361-402 (404)
No 1
>8H8B_A Putative Rhs-family protein; T6SS, Rhs proteins, polymorphic toxins, TOXIN;{Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)}
Probab=99.25 E-value=2.5e-11 Score=104.18 Aligned_cols=74 Identities=34% Similarity=0.544 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCccCCCCCcccccCCCCCCCeEEe-eecCChHHHHHHHHHHHHhccCCCCCCcceeecCCCCCCCCCCEEEEEcHHHh-
Q FD01543195_010 2 GGGLDYSDSNALYNKRPGVNPVVTI-EYSGDYLKDFERANTAAKLNQKSTPRGYVWHHLDDYDPVTNKGTMQLIKQGAH- 79 (91)
Q Consensus 2 ~G~PdF~~~~~~~~~~~~~~~~v~I-~~~g~r~~df~~An~~~gl~~~~~p~gytWHH~~d~~~~~~~~tMqLV~~~~H- 79 (91)
+|+|+|. ++ .. .. +++ .+.+++..||..|+.+.+. ....|.+|||||+++ +++||||++.||
T Consensus 1304 ~g~p~f~--~~---~~---~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~twhh~~~------~g~m~lv~~~ih~ 1367 (1402)
T 8H8B_A 1304 DGFPDFT--PY---SK---KT-VRVIGLTGDMANDVPLAMARAKI-TKYDKSKYVWHHHQD------GKTMMLIPKSVHS 1367 (1402)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCc--cc---cC---Cc-ceEeccCCChhhhHHHHHHHhcc-ccCCcccceeEEcCC------CCeEEEcchHHHh
Confidence 5789999 66 44 44 555 5688889999999998222 234689999999999 999999999999
Q ss_pred ---ccCCcCCchhcC
Q FD01543195_010 80 ---QGISHSGGVSQY 91 (91)
Q Consensus 80 ---~~~~H~GG~~~~ 91 (91)
..+.|.||+++|
T Consensus 1368 ~~~~~~~h~Gg~~~~ 1382 (1402)
T 8H8B_A 1368 VRNGGVAATGGRSVI 1382 (1402)
T ss_dssp ---------------
T ss_pred hccCCCCCcchhHHc
Confidence 889999999987
No 2
>8H8C_C C-terminal peptide from Putative Rhs-family protein; T6SS, Rhs proteins, polymorphic toxins, TOXIN;{Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)}
Probab=98.66 E-value=1.2e-07 Score=67.83 Aligned_cols=55 Identities=38% Similarity=0.605 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred eecCChHHHHHHHHHHHHhccCCCCCCcceeecCCCCCCCCCCEEEEEcHHHhccCCcCCchhc
Q FD01543195_010 27 EYSGDYLKDFERANTAAKLNQKSTPRGYVWHHLDDYDPVTNKGTMQLIKQGAHQGISHSGGVSQ 90 (91)
Q Consensus 27 ~~~g~r~~df~~An~~~gl~~~~~p~gytWHH~~d~~~~~~~~tMqLV~~~~H~~~~H~GG~~~ 90 (91)
.+.+.+..++..+...... ....+.+++|||..+ .++|++|+..+|. .|.||...
T Consensus 169 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~t~hh~~~------~~~~qlv~~~i~~--~~~gg~~~ 223 (250)
T 8H8C_C 169 GLTGDMANDVPLAMARAKI-TKYDKSKYVWHHHQD------GKTMMLIPKSVHS--VRNGGVAA 223 (250)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCCCCccccHHHHHHHHhh-hcCCccccceEEcCC------CCeEEEecHHHhc--ccCCccch
Confidence 3345555566555555433 345678899999999 9999999999997 67777654
No 3
>PF14414.10 ; WHH ; A nuclease of the HNH/ENDO VII superfamily with conserved WHH
Probab=97.65 E-value=0.00018 Score=34.36 Aligned_cols=1 Identities=0% Similarity=0.000 Sum_probs=0.0 Template_Neff=13.400
No 4
>8BD1_A Type IV secretion protein Rhs; Vibrio parahaemolyticus, Type-VI secretion system effector, Rhs toxin, WHH domain, TOXIN; 1.26A {Vibrio parahaemolyticus}
Probab=95.73 E-value=0.12 Score=31.92 Aligned_cols=75 Identities=35% Similarity=0.538 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred CCCccCCCCCcccccCCCCCCCeEEe-eecCChHHHHHHHHHHHHhccCCCCCCcceeecCCCCCCCCCCEEEEEcHHHh
Q FD01543195_010 1 SGGGLDYSDSNALYNKRPGVNPVVTI-EYSGDYLKDFERANTAAKLNQKSTPRGYVWHHLDDYDPVTNKGTMQLIKQGAH 79 (91)
Q Consensus 1 ~~G~PdF~~~~~~~~~~~~~~~~v~I-~~~g~r~~df~~An~~~gl~~~~~p~gytWHH~~d~~~~~~~~tMqLV~~~~H 79 (91)
.+|.|.+. .+ .. .. +.+ .....+..++..+....++ ....+.+++||+... ...+++++..++
T Consensus 35 ~~g~~~~~--~~---~~---~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 98 (134)
T 8BD1_A 35 SDGFPDFT--PY---SK---KT-VRVIGLTGDMANDVPLAMARAKI-TKYDKSKYVWHHHQD------GKTMMLIPKSVH 98 (134)
T ss_dssp TTSCBCCT--TT---CS---CE-EECTTCCSCHHHHHHHHHHHHTC-SCCCTTTEEEEECTT------SSEEEEEEHHHH
T ss_pred CCCccCCC--cc---ce---ee-eecccCCCChhhCHHHHHHHhCC-CCCCccCCeeEEcCC------CCeEEEeeHHHH
Q ss_pred cc----CCcCCchhcC
Q FD01543195_010 80 QG----ISHSGGVSQY 91 (91)
Q Consensus 80 ~~----~~H~GG~~~~ 91 (91)
.. +.+.||...+
T Consensus 99 ~~~~~~~~~~g~~~~~ 114 (134)
T 8BD1_A 99 SVRNGGVAHTGGRSVI 114 (134)
T ss_dssp CGGGTCCCCCCHHHHH
T ss_pred ccccCCCCCcchHHhh
No 5
>PF12639.11 ; Colicin-DNase ; DNase/tRNase domain of colicin-like bacteriocin
Probab=94.40 E-value=0.16 Score=26.94 Aligned_cols=34 Identities=38% Similarity=0.869 Sum_probs=0.0 Template_Neff=14.500
Q ss_pred cCCCCCCcceeecCCCCCCCCCCEEEEEcHHHhccCCcCC
Q FD01543195_010 47 QKSTPRGYVWHHLDDYDPVTNKGTMQLIKQGAHQGISHSG 86 (91)
Q Consensus 47 ~~~~p~gytWHH~~d~~~~~~~~tMqLV~~~~H~~~~H~G 86 (91)
....+.+++|||..+ .+.+++++..++..+.|.|
T Consensus 64 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g 97 (97)
T Q3IK23_PSET1/9 64 NGDKPEGFTWHHHQE------TGAMQLIDTEIHDKTGHTG 97 (97)
T ss_pred cCCCCCCcceEeCCC------CCeEEEccHHHHHhcCCCC
No 6
>5XGG_F Unconventional myosin IB; SH3, MyosinI, Entamoeba histolytica, EhMySH3, CONTRACTILE PROTEIN; HET: SO4; 1.72A {Entamoeba histolytica} SCOP: b.34.2.0, l.1.1.1
Probab=31.05 E-value=31 Score=15.86 Aligned_cols=6 Identities=33% Similarity=0.257 Sum_probs=0.0 Template_Neff=14.800
Q ss_pred cceeec
Q FD01543195_010 54 YVWHHL 59 (91)
Q Consensus 54 ytWHH~ 59 (91)
++|||+
T Consensus 60 ~~~~~~ 65 (66)
T 5XGG_F 60 EHHHHH 65 (66)
T ss_dssp ------
T ss_pred ccccCC
No 7
>7VRX_C Aminotransferase; auxin homeostasis, indole-3-pyruvic acid aminotransferase, substrate specificity, TRANSFERASE; HET: SO4, LLP; 1.96634676226A {Solanum melongena}
Probab=22.48 E-value=2.6e+02 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred EEeeecCChHHHHHHHHHHHHhc-------cCCCCCCcceeecC
Q FD01543195_010 24 VTIEYSGDYLKDFERANTAAKLN-------QKSTPRGYVWHHLD 60 (91)
Q Consensus 24 v~I~~~g~r~~df~~An~~~gl~-------~~~~p~gytWHH~~ 60 (91)
++|.+......+++.+-+. |. ....+..+-|||+.
T Consensus 361 iRi~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T 7VRX_C 361 VRVSFGGLIEKDCRAAAER--LRKGLEELVNSGMASLEHHHHHH 402 (404)
T ss_dssp EEEECSSCSSCTTTTTCCC--C----------------------
T ss_pred EEEEecCCCHHHHHHHHHH--HHHHHHHHHccCCCCccCCCCCC