Query FD01543278_02063 type IV secretion protein Rhs
Match_columns 80
No_of_seqs 47 out of 49
Neff 4.71385
Searched_HMMs 86581
Date Mon Feb 26 20:35:12 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/2645417.hhr -oa3m ../results/2645417.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8H8B_A Putative Rhs-family pro 99.1 5.6E-11 6.4E-16 99.6 4.2 69 1-80 1305-1378(1402)
2 8H8C_C C-terminal peptide from 98.7 4.5E-08 5.2E-13 68.2 5.2 25 49-73 190-215 (250)
3 PF12639.11 ; Colicin-DNase ; D 97.2 0.0069 7.9E-08 31.3 6.2 78 1-79 7-97 (97)
4 PF14414.10 ; WHH ; A nuclease 97.1 0.0011 1.3E-08 30.6 2.5 32 49-80 4-36 (43)
5 8BD1_A Type IV secretion prote 95.9 0.044 5.1E-07 32.9 4.5 69 1-80 37-110 (134)
6 PF13994.10 ; PgaD ; PgaD-like 85.0 2.3 2.7E-05 28.5 3.1 32 31-62 99-131 (133)
7 PF14056.10 ; DUF4250 ; Domain 69.8 13 0.00015 21.8 2.9 26 32-57 24-49 (55)
8 PF06353.16 ; DUF1062 ; Protein 66.9 14 0.00016 25.8 2.9 26 30-55 106-131 (136)
9 2KVV_A Putative excisionase; e 50.6 45 0.00052 21.0 3.0 22 32-54 14-35 (78)
10 PF11242.12 ; DUF2774 ; Protein 47.8 43 0.00049 21.2 2.5 20 32-51 18-37 (64)
11 PF05344.15 ; DUF746 ; Domain o 41.2 73 0.00085 18.4 2.7 21 31-51 15-35 (62)
12 PF19575.3 ; HTH_58 ; Helix-tur 41.0 1E+02 0.0012 18.9 3.5 32 32-63 40-73 (73)
13 5B52_B H-NS family protein Mva 40.7 1.1E+02 0.0013 19.4 3.7 37 23-59 32-68 (69)
14 2M60_A Enterocin JSB; leaderle 40.2 96 0.0011 19.0 3.0 23 30-52 3-43 (43)
15 PF00376.27 ; MerR ; MerR famil 39.1 81 0.00094 15.3 3.0 23 32-54 3-27 (40)
16 PF12244.12 ; DUF3606 ; Protein 36.3 70 0.00081 18.5 2.1 20 34-53 24-43 (53)
17 1Y6U_A Excisionase from transp 36.2 1.1E+02 0.0012 15.8 3.0 24 32-55 20-44 (70)
18 PF10654.13 ; DUF2481 ; Protein 35.1 1.1E+02 0.0012 20.7 3.1 23 31-53 83-105 (126)
19 PF12668.11 ; DUF3791 ; Protein 34.0 1.1E+02 0.0013 17.5 2.8 22 32-53 8-29 (58)
20 3HU5_A Isochorismatase family 32.7 2.2E+02 0.0026 19.3 4.4 45 13-59 156-204 (204)
21 PF15637.10 ; Tox-HNH-HHH ; HNH 32.1 86 0.001 19.0 2.1 28 52-79 74-102 (103)
22 PF08535.14 ; KorB ; KorB domai 31.1 1.4E+02 0.0016 17.4 2.8 24 32-55 7-30 (92)
23 6QQ4_A General odorant-binding 30.1 1.9E+02 0.0022 17.9 3.5 28 25-52 7-34 (121)
24 PF07278.15 ; DUF1441 ; Protein 28.3 1.7E+02 0.002 19.1 3.2 24 32-55 5-28 (147)
25 2OA4_A SiR5; SiR5, Structural 28.3 1.3E+02 0.0015 19.6 2.5 20 32-51 54-73 (101)
26 2AHQ_A RNA polymerase sigma fa 27.5 1.7E+02 0.002 17.5 2.9 25 31-55 40-69 (76)
27 4NUT_B Ribosome assembly 1 pro 27.4 32 0.00037 22.1 -0.3 16 41-56 5-20 (57)
28 PF10281.13 ; Ish1 ; Putative n 27.2 1.1E+02 0.0013 16.1 1.8 16 40-55 4-19 (38)
29 PF20132.3 ; DUF6522 ; Family o 26.1 1.8E+02 0.0021 19.4 3.0 24 32-55 15-38 (87)
30 PF06806.16 ; DUF1233 ; Putativ 25.7 2.1E+02 0.0024 15.9 2.9 25 32-56 13-40 (70)
31 5IKF_B Cryptic loci regulator 25.7 2.1E+02 0.0025 21.7 3.5 28 27-54 109-136 (155)
32 6G1T_A AM32; Repressor, Protei 25.6 1.9E+02 0.0022 20.2 3.1 26 32-57 13-44 (122)
33 PF19709.3 ; DUF6206 ; Family o 25.6 1.6E+02 0.0019 23.4 3.1 29 28-56 229-260 (271)
34 2JRT_A Uncharacterized protein 24.6 1.7E+02 0.0019 18.5 2.5 20 32-51 53-72 (95)
35 2CW1_A SN4m; LAMBDA CRO FOLD, 24.5 2.1E+02 0.0025 15.6 3.0 22 32-53 17-38 (65)
36 PF04645.16 ; DUF603 ; Protein 23.6 1.8E+02 0.0021 21.4 2.8 48 32-79 23-72 (181)
37 8DGL_A Recombination Direction 23.3 2.9E+02 0.0033 16.6 3.9 39 32-71 23-62 (91)
38 2O8K_A RNA polymerase sigma fa 23.2 1.9E+02 0.0022 16.4 2.4 26 31-56 27-57 (63)
39 PF11116.12 ; DUF2624 ; Protein 22.8 2.6E+02 0.003 18.0 3.1 24 33-56 22-50 (83)
40 1DQE_A PHEROMONE-BINDING PROTE 22.7 2.8E+02 0.0032 17.7 3.3 26 25-50 10-35 (137)
41 7LW0_D Terminase small subunit 22.4 1.9E+02 0.0022 14.2 2.8 21 32-52 6-26 (56)
42 PF02255.20 ; PTS_IIA ; PTS sys 22.0 1.2E+02 0.0014 20.1 1.6 14 23-36 25-38 (94)
43 7LWR_G Terminase, small subuni 21.3 2E+02 0.0023 14.0 2.7 20 32-51 6-25 (54)
44 PF08769.15 ; Spo0A_C ; Sporula 21.2 1.9E+02 0.0022 18.2 2.3 20 28-47 39-58 (104)
45 PF18090.5 ; SoPB_HTH ; Centrom 21.0 2.6E+02 0.003 15.3 2.9 24 32-55 23-46 (75)
46 2E2A_B PROTEIN (ENZYME IIA); E 21.0 1.3E+02 0.0015 20.3 1.5 14 23-36 32-45 (105)
47 5DIC_A Odorant-binding protein 20.6 3.6E+02 0.0041 16.7 3.6 28 25-52 10-37 (117)
48 1C3Y_A THP12 CARRIER PROTEIN; 20.5 3.4E+02 0.004 16.5 3.7 26 27-52 7-32 (108)
49 6OGH_A AAEL005772-PA; Odorant 20.4 3.6E+02 0.0041 16.7 4.1 35 18-52 2-36 (123)
50 PF09035.14 ; Tn916-Xis ; Excis 20.3 2.2E+02 0.0026 14.3 3.2 25 32-56 19-44 (69)
51 1TUJ_A odorant binding protein 20.1 3.5E+02 0.004 16.9 3.3 26 27-52 14-39 (123)
No 1
>8H8B_A Putative Rhs-family protein; T6SS, Rhs proteins, polymorphic toxins, TOXIN;{Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)}
Probab=99.15 E-value=5.6e-11 Score=99.61 Aligned_cols=69 Identities=26% Similarity=0.458 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCCCCCceeeEeecCCcccCCchhcHHHHHHHHHHHhCCCHHHHHHHHccCCCcccccC-CceEEEcchhhh----ccC
Q FD01543278_020 1 GRPDFSPWSKGSITFNEGVLNGSQNDFTEVYKSIAKEMNITPTAAKNLLSEKGLTPHHLS-VTEIILVPSDLH----GNV 75 (80)
Q Consensus 1 G~PDFsp~s~~~V~I~~~mt~~R~~nf~~ad~~la~~~~~t~~ei~~~r~~n~~TWHe~~-~~tmqLVPt~Ih----~~f 75 (80)
|.|+|++++...+++. .+.+++..+|..|+.++... .+.+.+|||||+. .++|||||+.|| ..+
T Consensus 1305 g~p~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~twhh~~~~g~m~lv~~~ih~~~~~~~ 1373 (1402)
T 8H8B_A 1305 GFPDFTPYSKKTVRVI-GLTGDMANDVPLAMARAKIT----------KYDKSKYVWHHHQDGKTMMLIPKSVHSVRNGGV 1373 (1402)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCccccCCcceEe-ccCCChhhhHHHHHHHhccc----------cCCcccceeEEcCCCCeEEEcchHHHhhccCCC
Confidence 6899999999999988 89999999999999986432 2578899999999 999999999999 889
Q ss_pred CCCCC
Q FD01543278_020 76 PHIGS 80 (80)
Q Consensus 76 ~H~GG 80 (80)
.|+||
T Consensus 1374 ~h~Gg 1378 (1402)
T 8H8B_A 1374 AATGG 1378 (1402)
T ss_dssp -----
T ss_pred CCcch
Confidence 99997
No 2
>8H8C_C C-terminal peptide from Putative Rhs-family protein; T6SS, Rhs proteins, polymorphic toxins, TOXIN;{Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)}
Probab=98.72 E-value=4.5e-08 Score=68.17 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HccCCCcccccC-CceEEEcchhhhc
Q FD01543278_020 49 LSEKGLTPHHLS-VTEIILVPSDLHG 73 (80)
Q Consensus 49 r~~n~~TWHe~~-~~tmqLVPt~Ih~ 73 (80)
..+.+++|||.. .++|++|+..+|.
T Consensus 190 ~~~~~~t~hh~~~~~~~qlv~~~i~~ 215 (250)
T 8H8C_C 190 YDKSKYVWHHHQDGKTMMLIPKSVHS 215 (250)
T ss_dssp --------------------------
T ss_pred CCccccceEEcCCCCeEEEecHHHhc
Confidence 456789999999 9999999999986
No 3
>PF12639.11 ; Colicin-DNase ; DNase/tRNase domain of colicin-like bacteriocin
Probab=97.18 E-value=0.0069 Score=31.29 Aligned_cols=78 Identities=17% Similarity=0.358 Sum_probs=0.0 Template_Neff=14.500
Q ss_pred C-CCCCCCceeeEeecCCcccCCchhcHHHHHHHHHHHhC--------CCHHHHHHH---HccCCCcccccC-CceEEEc
Q FD01543278_020 1 G-RPDFSPWSKGSITFNEGVLNGSQNDFTEVYKSIAKEMN--------ITPTAAKNL---LSEKGLTPHHLS-VTEIILV 67 (80)
Q Consensus 1 G-~PDFsp~s~~~V~I~~~mt~~R~~nf~~ad~~la~~~~--------~t~~ei~~~---r~~n~~TWHe~~-~~tmqLV 67 (80)
| .|++.......++.. .....+...+......+...+. +....+..+ .....++||+.. ...++++
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (97)
T Q3IK23_PSET1/9 7 GVFPKFESYCDVKLPDE-NLGDSDSKQFRICNEALKEEYENGTLNCSKFSERQLDQIKNGDKPEGFTWHHHQETGAMQLI 85 (97)
T ss_pred cCCCCCCccEEEECCHH-HcCCChHHHHHHHHHHHHHHHHcChhhHhhCCHHHHHHHHcCCCCCCcceEeCCCCCeEEEc
Q ss_pred chhhhccCCCCC
Q FD01543278_020 68 PSDLHGNVPHIG 79 (80)
Q Consensus 68 Pt~Ih~~f~H~G 79 (80)
+..++..+.|.|
T Consensus 86 ~~~~~~~~~~~g 97 (97)
T Q3IK23_PSET1/9 86 DTEIHDKTGHTG 97 (97)
T ss_pred cHHHHHhcCCCC
No 4
>PF14414.10 ; WHH ; A nuclease of the HNH/ENDO VII superfamily with conserved WHH
Probab=97.11 E-value=0.0011 Score=30.62 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred HccCCCcccccC-CceEEEcchhhhccCCCCCC
Q FD01543278_020 49 LSEKGLTPHHLS-VTEIILVPSDLHGNVPHIGS 80 (80)
Q Consensus 49 r~~n~~TWHe~~-~~tmqLVPt~Ih~~f~H~GG 80 (80)
+...+++||+.. ...+++++..++..+.+.||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 36 (43)
T R6DS92_9CLOT/1 4 RKEHGYTWHECRDMKTMQKVPSIVHNNIPHSGG 36 (43)
T ss_pred cCCCCCcceecCCCCeEEeccHHHHhcCCCccc
No 5
>8BD1_A Type IV secretion protein Rhs; Vibrio parahaemolyticus, Type-VI secretion system effector, Rhs toxin, WHH domain, TOXIN; 1.26A {Vibrio parahaemolyticus}
Probab=95.88 E-value=0.044 Score=32.94 Aligned_cols=69 Identities=26% Similarity=0.452 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred CCCCCCCceeeEeecCCcccCCchhcHHHHHHHHHHHhCCCHHHHHHHHccCCCcccccC-CceEEEcchhhhcc----C
Q FD01543278_020 1 GRPDFSPWSKGSITFNEGVLNGSQNDFTEVYKSIAKEMNITPTAAKNLLSEKGLTPHHLS-VTEIILVPSDLHGN----V 75 (80)
Q Consensus 1 G~PDFsp~s~~~V~I~~~mt~~R~~nf~~ad~~la~~~~~t~~ei~~~r~~n~~TWHe~~-~~tmqLVPt~Ih~~----f 75 (80)
|.|.+.+.....+.+. .....+..++..+...+ -.......+++||+.. ...+++++..++.. +
T Consensus 37 g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (134)
T 8BD1_A 37 GFPDFTPYSKKTVRVI-GLTGDMANDVPLAMARA----------KITKYDKSKYVWHHHQDGKTMMLIPKSVHSVRNGGV 105 (134)
T ss_dssp SCBCCTTTCSCEEECT-TCCSCHHHHHHHHHHHH----------TCSCCCTTTEEEEECTTSSEEEEEEHHHHCGGGTCC
T ss_pred CccCCCccceeeeecc-cCCCChhhCHHHHHHHh----------CCCCCCccCCeeEEcCCCCeEEEeeHHHHccccCCC
Q ss_pred CCCCC
Q FD01543278_020 76 PHIGS 80 (80)
Q Consensus 76 ~H~GG 80 (80)
.+.||
T Consensus 106 ~~~g~ 110 (134)
T 8BD1_A 106 AHTGG 110 (134)
T ss_dssp CCCCH
T ss_pred CCcch
No 6
>PF13994.10 ; PgaD ; PgaD-like protein
Probab=84.97 E-value=2.3 Score=28.52 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHHhCCCHHHHHHHHccCCCcccccC-Cc
Q FD01543278_020 31 YKSIAKEMNITPTAAKNLLSEKGLTPHHLS-VT 62 (80)
Q Consensus 31 d~~la~~~~~t~~ei~~~r~~n~~TWHe~~-~~ 62 (80)
++.+|+.++++++++.+++.....+.|+.+ ++
T Consensus 99 ~~~la~~f~~~~~~l~~~q~~k~i~v~~d~~G~ 131 (133)
T W8X1U6_CASDE/2 99 PETLARHFGVSLAQLRILRTSRSLLIHHTDEGR 131 (133)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCeEEEEeCCCCC
No 7
>PF14056.10 ; DUF4250 ; Domain of unknown function (DUF4250)
Probab=69.75 E-value=13 Score=21.84 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCccc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLTPH 57 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~TWH 57 (80)
+.||+.++++.+.+.+.-+..||.|+
T Consensus 24 ~~i~~~~~i~~~~l~~~l~~~GY~y~ 49 (55)
T R5LDH5_9FIRM/3 24 DDFCDKYEVDKALITSKLKSAGYIYN 49 (55)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCeee
No 8
>PF06353.16 ; DUF1062 ; Protein of unknown function (DUF1062)
Probab=66.86 E-value=14 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHhCCCHHHHHHHHccCCCc
Q FD01543278_020 30 VYKSIAKEMNITPTAAKNLLSEKGLT 55 (80)
Q Consensus 30 ad~~la~~~~~t~~ei~~~r~~n~~T 55 (80)
.|+.||+++++|.++|+++.++..+.
T Consensus 106 lDrlLa~~LglSRs~v~~Li~~G~I~ 131 (136)
T F2JMB0_CELLD/3 106 MDKVLSRQLEISRAQVRSLAEKGILS 131 (136)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCEE
No 9
>2KVV_A Putative excisionase; excisionase, DNA binding, wHTH motif, Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-2, Protein Structure Initiative; NMR {Klebsiella pneumoniae}
Probab=50.64 E-value=45 Score=21.04 Aligned_cols=22 Identities=5% Similarity=0.071 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHhCCCHHHHHHHHccCCC
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGL 54 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~ 54 (80)
+++|+.+|+|++.|.+||. ..+
T Consensus 14 ~~~a~~lG~s~~tL~~~r~-~~~ 35 (78)
T 2KVV_A 14 KALMVRTGLGARQIESYRQ-GAW 35 (78)
T ss_dssp HHHHHHHCCCHHHHHHHHT-TTC
T ss_pred HHHHHHHCCCHHHHHHHHh-CCc
No 10
>PF11242.12 ; DUF2774 ; Protein of unknown function (DUF2774)
Probab=47.83 E-value=43 Score=21.20 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred HHHHHHhCCCHHHHHHHHcc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSE 51 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~ 51 (80)
..+|+++|+|++.|.+|.+.
T Consensus 18 ~EIA~~LGiS~~tV~~~~~~ 37 (64)
T D4Z9X8_BPAR1/5 18 IEIARELNLQAKEVAVLWAR 37 (64)
T ss_pred HHHHHHhCCCHHHHHHHHHH
No 11
>PF05344.15 ; DUF746 ; Domain of Unknown Function (DUF746)
Probab=41.18 E-value=73 Score=18.38 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHhCCCHHHHHHHHcc
Q FD01543278_020 31 YKSIAKEMNITPTAAKNLLSE 51 (80)
Q Consensus 31 d~~la~~~~~t~~ei~~~r~~ 51 (80)
...+|+.++++..-|.+|++.
T Consensus 15 ~~~ia~~lgis~~tv~~W~~~ 35 (62)
T Q8Y104_RALSO/1 15 LEEASFRLGLDVECISNWLAR 35 (62)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
No 12
>PF19575.3 ; HTH_58 ; Helix-turn-helix domain
Probab=40.98 E-value=1e+02 Score=18.88 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCcccccC--Cce
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLTPHHLS--VTE 63 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~TWHe~~--~~t 63 (80)
..+|+++++|...|.++.+..+.+..... .+|
T Consensus 40 ~eIA~~~giS~~tV~~~l~~~~~~~r~~~~~~r~ 73 (73)
T A0A3E0GZ65_9PS 40 RALAESTGRSYGFVHRVLSESGVQLRGRGGATRT 73 (73)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCCCCCCCCCCCC
No 13
>5B52_B H-NS family protein MvaT; transcriptional regulator, nucleoid associated protein, TRANSCRIPTION; 2.3A {Pseudomonas putida (strain KT2440)}
Probab=40.71 E-value=1.1e+02 Score=19.40 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred chhcHHHHHHHHHHHhCCCHHHHHHHHccCCCccccc
Q FD01543278_020 23 SQNDFTEVYKSIAKEMNITPTAAKNLLSEKGLTPHHL 59 (80)
Q Consensus 23 R~~nf~~ad~~la~~~~~t~~ei~~~r~~n~~TWHe~ 59 (80)
|...|...=+.|+++||.|..||.....+.--.-||+
T Consensus 32 ~eleF~~kL~~Lm~eYg~s~~dvi~iL~p~~~~~~~~ 68 (69)
T 5B52_B 32 REIEFEQKLVGLMKSYDKSLRDIIAILDPKLEHHHHH 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCcccccccCC
No 14
>2M60_A Enterocin JSB; leaderless bacteriocin, ANTIMICROBIAL PROTEIN; HET: FME; NMR {Enterococcus faecalis}
Probab=40.21 E-value=96 Score=18.99 Aligned_cols=23 Identities=9% Similarity=0.123 Sum_probs=0.0 Template_Neff=2.000
Q ss_pred HHHHHHHHhC------------------CCHHHHHHHHccC
Q FD01543278_020 30 VYKSIAKEMN------------------ITPTAAKNLLSEK 52 (80)
Q Consensus 30 ad~~la~~~~------------------~t~~ei~~~r~~n 52 (80)
|-.+||.++| ||.+.|++|.+..
T Consensus 3 a~akla~K~Gw~~vkKyY~~IMq~IgeGwtI~~ie~~lKrh 43 (43)
T 2M60_A 3 AIAKLVAKFGWPFIKKFYKQIMQFIGQGWTIDQIEKWLKRH 43 (43)
T ss_dssp SHHHHHTTSCHHHHTTSHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHHhcCCcHHHHHHHHhhC
No 15
>PF00376.27 ; MerR ; MerR family regulatory protein
Probab=39.08 E-value=81 Score=15.31 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHh--CCCHHHHHHHHccCCC
Q FD01543278_020 32 KSIAKEM--NITPTAAKNLLSEKGL 54 (80)
Q Consensus 32 ~~la~~~--~~t~~ei~~~r~~n~~ 54 (80)
+.+++.+ ++|.+-|.+|+....+
T Consensus 3 ~~~~~~~~~~~s~~ti~~~~~~g~~ 27 (40)
T Q55938_SYNY3/7 3 KELTDAVGGGVTPRMVRHYHTLGLL 27 (40)
T ss_pred HHHHHHhCCCCCHHHHHHHHHcCCC
No 16
>PF12244.12 ; DUF3606 ; Protein of unknown function (DUF3606)
Probab=36.29 E-value=70 Score=18.49 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHHhCCCHHHHHHHHccCC
Q FD01543278_020 34 IAKEMNITPTAAKNLLSEKG 53 (80)
Q Consensus 34 la~~~~~t~~ei~~~r~~n~ 53 (80)
+|++||+|+.++..-...-|
T Consensus 24 wa~k~~vs~~~l~~av~~vG 43 (53)
T C4LBJ3_TOLAT/5 24 WCKELGCTDRELAAAVRAVG 43 (53)
T ss_pred HHHHHCCCHHHHHHHHHHHC
No 17
>1Y6U_A Excisionase from transposon Tn916; DNA architectural protein, Tyrosine recombinase, Excisionase, Winged-helix protein, Conjugative transposon, DNA BINDING PROTEIN; NMR {Enterococcus faecalis}
Probab=36.20 E-value=1.1e+02 Score=15.76 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred HHHHHHhCCCHHHHHHHHccC-CCc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEK-GLT 55 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n-~~T 55 (80)
..+|+.++++...+.+|.+.. .+.
T Consensus 20 ~e~~~~~~~~~~~~~~~~~~~~~~~ 44 (70)
T 1Y6U_A 20 EEASKYFRIGENKLRRLAEENKNAN 44 (70)
T ss_dssp HHHHHHTCSCHHHHHHHHHHCTTCS
T ss_pred HHHHHHhCCCHHHHHHHHHhcCCCC
No 18
>PF10654.13 ; DUF2481 ; Protein of unknown function (DUF2481)
Probab=35.06 E-value=1.1e+02 Score=20.65 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred HHHHHHHhCCCHHHHHHHHccCC
Q FD01543278_020 31 YKSIAKEMNITPTAAKNLLSEKG 53 (80)
Q Consensus 31 d~~la~~~~~t~~ei~~~r~~n~ 53 (80)
...+|+.+|+|.+-|.+|++.+.
T Consensus 83 ~~eIA~~lgvs~sTv~~~~~~~~ 105 (126)
T Q8Y4X4_LISMO/2 83 CYAIAEHFKVSKAVVFNYTQRNK 105 (126)
T ss_pred HHHHHHHHCCCHHHHHHHHhcCc
No 19
>PF12668.11 ; DUF3791 ; Protein of unknown function (DUF3791)
Probab=33.97 E-value=1.1e+02 Score=17.48 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHhCCCHHHHHHHHccCC
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKG 53 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~ 53 (80)
+.+|+++++|.+++-+.-...+
T Consensus 8 ~~~a~~~~is~~ea~~~f~~s~ 29 (58)
T R5IYE2_9FIRM/5 8 EYYAAHIGRPGNEIYALFDRTG 29 (58)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC
No 20
>3HU5_A Isochorismatase family protein; STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, isochorismatase hydrolase. Desulfovibrio vulgaris; HET: MSE; 1.5A {Desulfovibrio vulgaris} SCOP: c.33.1.0
Probab=32.75 E-value=2.2e+02 Score=19.35 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred eecCCcccCCchhcHHHHHHHHHHHhC---CCHHHHHHHH-ccCCCccccc
Q FD01543278_020 13 ITFNEGVLNGSQNDFTEVYKSIAKEMN---ITPTAAKNLL-SEKGLTPHHL 59 (80)
Q Consensus 13 V~I~~~mt~~R~~nf~~ad~~la~~~~---~t~~ei~~~r-~~n~~TWHe~ 59 (80)
|--+ ............+-+.| ..++ ++.+++.... .....||||+
T Consensus 156 v~~d-~~~~~~~~~~~~~l~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 204 (204)
T 3HU5_A 156 VVTD-ACSARTPGVAESNINDM-RAMGITCVPLTALDDVLARREGHHHHHH 204 (204)
T ss_dssp EEEE-EEECSSHHHHHHHHHHH-HHHTCEEECGGGHHHHHHC---------
T ss_pred EEee-ccccCCHHHHHHHHHHH-HHcCCeEeeHHHHHHHHHhccCCCCCCC
No 21
>PF15637.10 ; Tox-HNH-HHH ; HNH/Endo VII superfamily nuclease toxin with a HHH motif
Probab=32.06 E-value=86 Score=18.96 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCcccccC-CceEEEcchhhhccCCCCC
Q FD01543278_020 52 KGLTPHHLS-VTEIILVPSDLHGNVPHIG 79 (80)
Q Consensus 52 n~~TWHe~~-~~tmqLVPt~Ih~~f~H~G 79 (80)
..+.-|+.. ...+..+|..+|..+..+.
T Consensus 74 ~~l~~h~~~~g~~~~~lp~~~h~~~~~~~ 102 (103)
T H3SNR9_9BACL/5 74 DPLRHHHIGEGGQAAALPVTLHPGYGGVH 102 (103)
T ss_pred CCccccccCCCccEEEcccccccCCCCCC
No 22
>PF08535.14 ; KorB ; KorB domain
Probab=31.10 E-value=1.4e+02 Score=17.42 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLT 55 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~T 55 (80)
+.+|+.+|++.+.|.+|..-..+.
T Consensus 7 ~eia~~~g~s~s~v~~~l~~~~l~ 30 (92)
T Q0VMS5_ALCBS/1 7 TDIAKQLGKNKSWLARYRLLYQSN 30 (92)
T ss_pred HHHHHHHCCCHHHHHHHHHHhCCC
No 23
>6QQ4_A General odorant-binding protein 28a; odorant-binding protein, pheromone-binding protein, drosophila melanogaster, olfaction, gustation, taste, transport, carrier, perireceptor events, complex, TRANSPORT PROTEIN; HET: 1PE; 1.998A {Drosophila melanogaster}
Probab=30.07 E-value=1.9e+02 Score=17.86 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred hcHHHHHHHHHHHhCCCHHHHHHHHccC
Q FD01543278_020 25 NDFTEVYKSIAKEMNITPTAAKNLLSEK 52 (80)
Q Consensus 25 ~nf~~ad~~la~~~~~t~~ei~~~r~~n 52 (80)
..+.++.+.+.++++++..++..++...
T Consensus 7 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 34 (121)
T 6QQ4_A 7 AKLMESAESCMPEVGATDADLQEMVKKQ 34 (121)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhcC
No 24
>PF07278.15 ; DUF1441 ; Protein of unknown function (DUF1441)
Probab=28.31 E-value=1.7e+02 Score=19.10 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLT 55 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~T 55 (80)
..+|+.+|+|..-|.+|.+..++.
T Consensus 5 ~e~A~~~gvs~~tv~~~~~~~~~~ 28 (147)
T Q8ZQ97_SALTY/9 5 TQLSAITGAHRQTIASRLKGVKTS 28 (147)
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCC
No 25
>2OA4_A SiR5; SiR5, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3, l.1.1.1
Probab=28.31 E-value=1.3e+02 Score=19.58 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHhCCCHHHHHHHHcc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSE 51 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~ 51 (80)
..++.+++++++.+.+|++.
T Consensus 54 ~~~~~~~gis~s~i~~W~~~ 73 (101)
T 2OA4_A 54 AEAKQTYGLSDEEFNSWVSA 73 (101)
T ss_dssp HHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
No 26
>2AHQ_A RNA polymerase sigma factor RpoN; Sigma-54, sigma factors, solution structure, transcription, RNA polymerase; NMR {Aquifex aeolicus}
Probab=27.50 E-value=1.7e+02 Score=17.47 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHh-----CCCHHHHHHHHccCCCc
Q FD01543278_020 31 YKSIAKEM-----NITPTAAKNLLSEKGLT 55 (80)
Q Consensus 31 d~~la~~~-----~~t~~ei~~~r~~n~~T 55 (80)
|..|++.+ +++...|.+||++.++.
T Consensus 40 d~~i~~~L~~~gi~isrrtV~kyr~~~~i~ 69 (76)
T 2AHQ_A 40 DQEIANILKEKGFKVARRTVAKYREMLGIP 69 (76)
T ss_dssp HHHHHHHHTTTSSCCCHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHhCCC
No 27
>4NUT_B Ribosome assembly 1 protein; SnoRNP assembly, RNA BINDING PROTEIN; 1.55A {Saccharomyces cerevisiae}
Probab=27.37 E-value=32 Score=22.12 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=0.0 Template_Neff=2.400
Q ss_pred CHHHHHHHHccCCCcc
Q FD01543278_020 41 TPTAAKNLLSEKGLTP 56 (80)
Q Consensus 41 t~~ei~~~r~~n~~TW 56 (80)
|..||.+||.+-..-|
T Consensus 5 t~edI~kWreeRkkmW 20 (57)
T 4NUT_B 5 TDEDVKKWREERKKMW 20 (57)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
No 28
>PF10281.13 ; Ish1 ; Putative nuclear envelope organisation protein
Probab=27.21 E-value=1.1e+02 Score=16.14 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CCHHHHHHHHccCCCc
Q FD01543278_020 40 ITPTAAKNLLSEKGLT 55 (80)
Q Consensus 40 ~t~~ei~~~r~~n~~T 55 (80)
||.++++.|...+++.
T Consensus 4 Ws~~~L~~wL~~~~i~ 19 (38)
T Q75BC7_ASHGO/2 4 WPLDSLRSWLEVHKLK 19 (38)
T ss_pred CCHHHHHHHHHHCCCC
No 29
>PF20132.3 ; DUF6522 ; Family of unknown function (DUF6522)
Probab=26.06 E-value=1.8e+02 Score=19.43 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLT 55 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~T 55 (80)
+.||+.++++++++...-....+|
T Consensus 15 ~~lA~~lgl~~~~l~~~mr~G~It 38 (87)
T A0A2R4MJ82_9HY 15 TDLGWLLNVPPEQVQRLMRENKIT 38 (87)
T ss_pred HHHHHHhCCCHHHHHHHHHCCCCe
No 30
>PF06806.16 ; DUF1233 ; Putative excisionase (DUF1233)
Probab=25.69 E-value=2.1e+02 Score=15.89 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHhCCCHHHHHHHHc---cCCCcc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLS---EKGLTP 56 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~---~n~~TW 56 (80)
+.+|+.+++|..-+.+|+. ..+..|
T Consensus 13 ~e~a~~lg~s~~tl~~~~~~~~~~~~~~ 40 (70)
T A0A380PD09_YER 13 DLLMSLNGMTKHMIQHARRKSWMEGREY 40 (70)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhcCCee
No 31
>5IKF_B Cryptic loci regulator protein 1; zinc fingers, alpha-helical, protein-protein interface, complex, transcription; 2.8A {Schizosaccharomyces pombe (strain 972 / ATCC 24843)}
Probab=25.67 E-value=2.1e+02 Score=21.68 Aligned_cols=28 Identities=14% Similarity=0.372 Sum_probs=0.0 Template_Neff=1.600
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccCCC
Q FD01543278_020 27 FTEVYKSIAKEMNITPTAAKNLLSEKGL 54 (80)
Q Consensus 27 f~~ad~~la~~~~~t~~ei~~~r~~n~~ 54 (80)
..++-++--+|++.+++++++.|..|+.
T Consensus 109 n~q~lEKaikqLdLs~~d~~~lre~n~v 136 (155)
T 5IKF_B 109 NRQTLEKAIKQLDLSPDKVIQLREQNGV 136 (155)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHTCE
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCc
No 32
>6G1T_A AM32; Repressor, Protein-DNA complex, Type IV secretion system, DNA BINDING PROTEIN; HET: EPE; 1.93A {Enterococcus faecalis}
Probab=25.63 E-value=1.9e+02 Score=20.18 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCc------cc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLT------PH 57 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~T------WH 57 (80)
+..|+.+|+|..-|.++.+++.++ |+
T Consensus 13 ke~a~~l~v~~~ti~~~~~~~kl~~~~~~~~~ 44 (122)
T 6G1T_A 13 KEMSERIGKNRNYLSQAYRNNKHEILKNFNYR 44 (122)
T ss_dssp HHHHHHTTCCTTHHHHHHHTTCHHHHTTSEEE
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCcccccceee
No 33
>PF19709.3 ; DUF6206 ; Family of unknown function (DUF6206)
Probab=25.59 E-value=1.6e+02 Score=23.35 Aligned_cols=29 Identities=14% Similarity=-0.175 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred HHHHHHHHHHhC-CCHHHHHHHHccCC--Ccc
Q FD01543278_020 28 TEVYKSIAKEMN-ITPTAAKNLLSEKG--LTP 56 (80)
Q Consensus 28 ~~ad~~la~~~~-~t~~ei~~~r~~n~--~TW 56 (80)
+.|++.+++... +|.++|++|.++.. .+|
T Consensus 229 ~~~n~~~~~~~~pit~~ev~~yy~~da~~~iW 260 (271)
T A0A177H9K4_9RH 229 DWGRAFAADEMAQWSNEIHDGLTKPPRLPGYW 260 (271)
T ss_pred HHHHHHHHHhccccCHHHHhhhcCCCCcccch
No 34
>2JRT_A Uncharacterized protein; NMR Solution, NESG, PSI, target RhR5, Rhodobacter sphaeroides, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics; NMR {Rhodobacter sphaeroides} SCOP: a.4.12.0, l.1.1.1
Probab=24.61 E-value=1.7e+02 Score=18.48 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred HHHHHHhCCCHHHHHHHHcc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSE 51 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~ 51 (80)
..+|.+++++++.+.+|++.
T Consensus 53 ~~~a~~~gis~s~i~~W~~~ 72 (95)
T 2JRT_A 53 REALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
No 35
>2CW1_A SN4m; LAMBDA CRO FOLD, DE NOVO PROTEIN; NMR {N/A} SCOP: k.46.1.1
Probab=24.51 E-value=2.1e+02 Score=15.58 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHhCCCHHHHHHHHccCC
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKG 53 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~ 53 (80)
..||+.++++..-|.+|.....
T Consensus 17 ~~la~~l~~s~~~i~~~~~~~~ 38 (65)
T 2CW1_A 17 EYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp HHHHHHSSSCHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHhCCC
No 36
>PF04645.16 ; DUF603 ; Protein of unknown function, DUF603
Probab=23.58 E-value=1.8e+02 Score=21.37 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCcccccC-CceEEEcchhh-hccCCCCC
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLTPHHLS-VTEIILVPSDL-HGNVPHIG 79 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~TWHe~~-~~tmqLVPt~I-h~~f~H~G 79 (80)
..+|+.+|+|..-|.+|.+...+.-+-.. .++..+-...+ ..--.|.+
T Consensus 23 ~EIA~~LgVSk~tV~r~ik~~~~~~~~~k~~g~~~i~~~~~~~~i~~~~~ 72 (181)
T Q9S073_BORBU/1 23 REIADKLGVSKVNVWRMRQKWESGESVVNQDSRLTISEDTLEHLLSQTFK 72 (181)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhcCCceeccCCeEEeCHHHHHHHHHHhhh
No 37
>8DGL_A Recombination Directionality Factor RdfS; Excisionase, Recombination Directionality Factor, winged helix-turn-helix, superhelix, DNA BINDING PROTEIN; HET: GOL; 2.45A {Mesorhizobium japonicum R7A}
Probab=23.30 E-value=2.9e+02 Score=16.63 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCcccccC-CceEEEcchhh
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLTPHHLS-VTEIILVPSDL 71 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~TWHe~~-~~tmqLVPt~I 71 (80)
+.+|+.+++++.-|.+|+....+. +... ++...+-+.+|
T Consensus 23 ~e~a~~lg~~~~t~~~~~~~~~~~-~~~~~g~~~~~~~~~v 62 (91)
T 8DGL_A 23 AQAAFYIGLSQRTLEKMRLTGGGP-KYRKHGRYVRYHIDEL 62 (91)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCSS-CCEEETTEEEEEHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCC-CCEeeCCccEEEHHHH
No 38
>2O8K_A RNA polymerase sigma factor RpoN; PROTEIN-DNA COMPLEX, HELIX-TURN-HELIX, TRANSCRIPTION FACTOR, SIGMA-54, RNA POLYMERASE, TRANSCRIPTION-DNA COMPLEX; NMR {Aquifex aeolicus}
Probab=23.17 E-value=1.9e+02 Score=16.43 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHhC-----CCHHHHHHHHccCCCcc
Q FD01543278_020 31 YKSIAKEMN-----ITPTAAKNLLSEKGLTP 56 (80)
Q Consensus 31 d~~la~~~~-----~t~~ei~~~r~~n~~TW 56 (80)
|..|++.+. ++...|.+||++.++..
T Consensus 27 d~~i~~~L~~~gi~isrrtV~~yr~~~~~~~ 57 (63)
T 2O8K_A 27 DQEIANILKEKGFKVARRTVAKYREMLGIPS 57 (63)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCc
No 39
>PF11116.12 ; DUF2624 ; Protein of unknown function (DUF2624)
Probab=22.80 E-value=2.6e+02 Score=18.03 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHhC--CCHHHHHHHH---ccCCCcc
Q FD01543278_020 33 SIAKEMN--ITPTAAKNLL---SEKGLTP 56 (80)
Q Consensus 33 ~la~~~~--~t~~ei~~~r---~~n~~TW 56 (80)
.+|+++| +|..|+++.+ +.+.+.|
T Consensus 22 ~~a~~~gi~Lt~~Ea~~i~~~lk~~~~~~ 50 (83)
T A0A6H3AMF7_BAC 22 KYSKEYEVPITTAQADQIVVLMKGKNINI 50 (83)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcCCCCCC
No 40
>1DQE_A PHEROMONE-BINDING PROTEIN; HELICAL BUNDLE, TRANSPORT PROTEIN; HET: BOM; 1.8A {Bombyx mori} SCOP: a.39.2.1
Probab=22.68 E-value=2.8e+02 Score=17.70 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred hcHHHHHHHHHHHhCCCHHHHHHHHc
Q FD01543278_020 25 NDFTEVYKSIAKEMNITPTAAKNLLS 50 (80)
Q Consensus 25 ~nf~~ad~~la~~~~~t~~ei~~~r~ 50 (80)
..+..+.+.++++.+++.+++.+++.
T Consensus 10 ~~~~~~~~~C~~~~~i~~~~~~~~~~ 35 (137)
T 1DQE_A 10 LNFGKALDECKKEMTLTDAINEDFYN 35 (137)
T ss_dssp HHHHTTHHHHHHHTTCCTHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
No 41
>7LW0_D Terminase small subunit; DNA Packaging, Terminase, VIRAL PROTEIN; 2.32A {Escherichia phage lambda}
Probab=22.37 E-value=1.9e+02 Score=14.18 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred HHHHHHhCCCHHHHHHHHccC
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEK 52 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n 52 (80)
..+++..+++++.+.+|+...
T Consensus 6 ~~~~~~~~~~~~t~~~~~~~g 26 (56)
T 7LW0_D 6 KQLADIFGASIRTIQNWQEQG 26 (56)
T ss_dssp HHHHHHHTCCHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHcC
No 42
>PF02255.20 ; PTS_IIA ; PTS system, Lactose/Cellobiose specific IIA subunit
Probab=22.01 E-value=1.2e+02 Score=20.15 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred chhcHHHHHHHHHH
Q FD01543278_020 23 SQNDFTEVYKSIAK 36 (80)
Q Consensus 23 R~~nf~~ad~~la~ 36 (80)
|..||.+|++.|.+
T Consensus 25 ~~g~f~~a~~~l~e 38 (94)
T Q18CM9_CLOD6/3 25 KENDFKKADELIEN 38 (94)
T ss_pred HcCCHHHHHHHHHH
No 43
>7LWR_G Terminase, small subunit; DNA Packaging, Terminase, VIRAL PROTEIN; 2.35A {Enterobacteria phage P21}
Probab=21.33 E-value=2e+02 Score=14.04 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=0.0 Template_Neff=12.000
Q ss_pred HHHHHHhCCCHHHHHHHHcc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSE 51 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~ 51 (80)
+.+|+.++++...+.+|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (54)
T 7LWR_G 6 KRLAEIFNVDPRTIERWQSQ 25 (54)
T ss_dssp HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHC
No 44
>PF08769.15 ; Spo0A_C ; Sporulation initiation factor Spo0A C terminal
Probab=21.20 E-value=1.9e+02 Score=18.24 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred HHHHHHHHHHhCCCHHHHHH
Q FD01543278_020 28 TEVYKSIAKEMNITPTAAKN 47 (80)
Q Consensus 28 ~~ad~~la~~~~~t~~ei~~ 47 (80)
......+|++++.|++.|++
T Consensus 39 k~iY~~vA~~~~~s~~~Ver 58 (104)
T F0T237_SYNGF/1 39 KELYPAIAKKYNTAPSRVER 58 (104)
T ss_pred cchHHHHHHHhCCCHHHHHH
No 45
>PF18090.5 ; SoPB_HTH ; Centromere-binding protein HTH domain
Probab=21.05 E-value=2.6e+02 Score=15.27 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred HHHHHHhCCCHHHHHHHHccCCCc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLLSEKGLT 55 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r~~n~~T 55 (80)
..||+.+|++.+.|.+|.....+.
T Consensus 23 ~~la~~~g~~~~~v~~~~~~~~~~ 46 (75)
T D7U710_VITVI/1 23 SALADAENISRKIITRCINTAKLP 46 (75)
T ss_pred HHHHHHhCCCHHHHHHHHHHccCC
No 46
>2E2A_B PROTEIN (ENZYME IIA); ENZYME IIA, HELICAL BUNDLES, PTS, TRANSFERASE, PHOSPHOTRANSFERASE SYSTEM; 2.1A {Lactococcus lactis} SCOP: a.7.2.1
Probab=20.96 E-value=1.3e+02 Score=20.33 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred chhcHHHHHHHHHH
Q FD01543278_020 23 SQNDFTEVYKSIAK 36 (80)
Q Consensus 23 R~~nf~~ad~~la~ 36 (80)
|..||.+|++.|.+
T Consensus 32 ~~gd~~~A~~~l~~ 45 (105)
T 2E2A_B 32 ENGDFAKADSLVVE 45 (105)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
No 47
>5DIC_A Odorant-binding protein; Palmitate olfaction odorant, Odorant-binding protein; HET: PLM; 1.185A {Phormia regina}
Probab=20.62 E-value=3.6e+02 Score=16.74 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred hcHHHHHHHHHHHhCCCHHHHHHHHccC
Q FD01543278_020 25 NDFTEVYKSIAKEMNITPTAAKNLLSEK 52 (80)
Q Consensus 25 ~nf~~ad~~la~~~~~t~~ei~~~r~~n 52 (80)
..+.++-+.++++.+++.+++.+++...
T Consensus 10 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 37 (117)
T 5DIC_A 10 AKVKVHFDECVKQEKVSEEEATKLRNKD 37 (117)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHcCC
No 48
>1C3Y_A THP12 CARRIER PROTEIN; EF-HAND, ALL-ALPHA, ANTIFREEZE PROTEIN; NMR {Tenebrio molitor} SCOP: a.39.2.1
Probab=20.54 E-value=3.4e+02 Score=16.49 Aligned_cols=26 Identities=4% Similarity=0.128 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccC
Q FD01543278_020 27 FTEVYKSIAKEMNITPTAAKNLLSEK 52 (80)
Q Consensus 27 f~~ad~~la~~~~~t~~ei~~~r~~n 52 (80)
+.++...+.++.+++.+++..+++..
T Consensus 7 ~~~~~~~C~~~~~~~~~~~~~~~~~~ 32 (108)
T 1C3Y_A 7 LKQHSDACKAESGVSEESLNKVRNRE 32 (108)
T ss_dssp SSSSCTTHHHHCCCTTSHHHHHTSSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHcCC
No 49
>6OGH_A AAEL005772-PA; Odorant binding protein, Chemo-sensory signaling, Lipid binding, TRANSPORT PROTEIN; HET: EIC, EPE; 1.85A {Aedes aegypti}
Probab=20.37 E-value=3.6e+02 Score=16.65 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred cccCCchhcHHHHHHHHHHHhCCCHHHHHHHHccC
Q FD01543278_020 18 GVLNGSQNDFTEVYKSIAKEMNITPTAAKNLLSEK 52 (80)
Q Consensus 18 ~mt~~R~~nf~~ad~~la~~~~~t~~ei~~~r~~n 52 (80)
.+...-...+.++-+.+.++++++.+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 36 (123)
T 6OGH_A 2 EFTVSTTEDLQRYRTECVSSLNIPADYVEKFKKWE 36 (123)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CCccCCHHHHHHHHHHHHHHcCCCHHHHHHHhhCC
No 50
>PF09035.14 ; Tn916-Xis ; Excisionase from transposon Tn916
Probab=20.27 E-value=2.2e+02 Score=14.27 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred HHHHHHhCCCHHHHHHHH-ccCCCcc
Q FD01543278_020 32 KSIAKEMNITPTAAKNLL-SEKGLTP 56 (80)
Q Consensus 32 ~~la~~~~~t~~ei~~~r-~~n~~TW 56 (80)
..+|+.+++++..+..|. ....+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T D4LZS3_9FIRM/1 19 SEAAEYYGIGEKRLRQIAGENEGADF 44 (69)
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCc
No 51
>1TUJ_A odorant binding protein ASP2; ALPHA HELIX, COMPLEX, TSP, ODORANT-BINDING PROTEIN, TRANSPORT PROTEIN; HET: TSD; NMR {Apis mellifera}
Probab=20.12 E-value=3.5e+02 Score=16.91 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHccC
Q FD01543278_020 27 FTEVYKSIAKEMNITPTAAKNLLSEK 52 (80)
Q Consensus 27 f~~ad~~la~~~~~t~~ei~~~r~~n 52 (80)
+..+-+.++++.+++++++..++...
T Consensus 14 ~~~~~~~C~~~~~v~~~~~~~~~~~~ 39 (123)
T 1TUJ_A 14 LMPDIMPCADELHISEDIATNIQAAK 39 (123)
T ss_dssp SHHHHHHHHHHHSSCTTTTCSSCSSS
T ss_pred HHHHhHHHHHHhCCCHHHHHHHHHhc