Query FD01543564_04149 DUF4329 domain-containing protein
Match_columns 120
No_of_seqs 112 out of 182
Neff 5.04276
Searched_HMMs 86581
Date Mon Feb 26 20:48:44 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7223688.hhr -oa3m ../results/7223688.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14220.10 ; DUF4329 ; Domain 99.8 5.9E-20 6.8E-25 128.4 8.5 109 3-115 1-135 (136)
2 1OI0_B HYPOTHETICAL PROTEIN AF 96.8 0.15 1.7E-06 35.1 12.3 106 7-118 8-119 (124)
3 5LD9_B JAMM1; JAMM/MPN+, metal 95.9 0.22 2.5E-06 34.6 8.8 107 7-118 18-135 (140)
4 2KKS_A Uncharacterized protein 95.0 0.83 9.6E-06 32.0 9.2 107 7-118 6-131 (146)
5 PF14464.10 ; Prok-JAB ; Prokar 95.0 0.93 1.1E-05 29.9 8.9 95 3-109 2-114 (114)
6 3RZU_F STAM-binding protein; U 93.5 2.9 3.4E-05 30.7 9.6 102 7-119 24-141 (187)
7 2ZNR_A AMSH-like protease; met 92.8 2.3 2.6E-05 30.6 8.1 106 7-119 15-144 (178)
8 6FJV_A 26S proteasome regulato 92.4 3.9 4.5E-05 27.9 10.6 104 7-117 14-152 (155)
9 4JXE_B AMSH-like protease sst2 89.0 9.3 0.00011 28.2 8.4 75 7-88 29-119 (197)
10 6FJU_A 26S proteasome regulato 89.0 6.2 7.2E-05 30.7 7.8 77 7-88 33-125 (228)
11 2OG4_A Pre-mRNA-splicing facto 88.8 7.1 8.2E-05 32.0 8.4 73 7-87 44-132 (254)
12 2KCQ_A Mov34/MPN/PAD-1 family; 87.2 13 0.00015 26.3 9.6 107 7-118 5-135 (153)
13 4NQL_A AMSH-like protease sst2 84.6 15 0.00017 28.4 7.8 80 4-88 53-143 (221)
14 5M59_F Putative pre-mRNA splic 83.6 11 0.00012 31.5 7.0 73 7-87 48-135 (276)
15 8BCE_J Pre-mRNA-processing-spl 80.1 16 0.00019 29.8 6.8 73 7-87 51-137 (263)
16 5CW6_A DrBRCC36; metalloprotea 79.6 26 0.0003 27.5 7.5 74 8-88 13-110 (262)
17 3RZV_A STAM-binding protein; U 75.9 50 0.00058 25.2 10.5 102 6-118 47-164 (211)
18 PF01398.25 ; JAB ; JAB1/Mov34/ 74.8 28 0.00033 21.8 5.8 80 4-91 10-106 (113)
19 6R8F_A Lys-63-specific deubiqu 71.3 77 0.00088 27.0 8.7 88 7-99 16-151 (316)
20 PF13509.10 ; S1_2 ; S1 domain 68.6 13 0.00016 23.0 2.9 26 14-39 33-58 (60)
21 PF03665.17 ; UPF0172 ; Unchara 67.0 73 0.00084 23.3 7.2 73 7-87 6-97 (188)
22 5CW4_C BRCA1/BRCA2-containing 65.9 85 0.00098 24.3 7.3 75 7-88 15-112 (255)
23 PF01011.25 ; PQQ ; PQQ enzyme 63.8 24 0.00028 16.6 3.3 21 97-117 4-24 (38)
24 5JOH_A COP9 signalosome comple 57.9 1.4E+02 0.0017 23.6 9.0 86 7-99 59-167 (257)
25 4O8Y_A 26S proteasome regulato 56.2 1.2E+02 0.0014 22.2 8.4 74 4-88 14-107 (185)
26 7QP7_8 Eukaryotic translation 54.4 1.2E+02 0.0014 25.5 6.9 76 7-88 43-136 (352)
27 8PPL_I8 Eukaryotic translation 54.4 1.2E+02 0.0014 25.5 6.9 76 7-88 43-136 (352)
28 5W83_B Ubiquitin carboxyl-term 53.9 1.4E+02 0.0016 22.3 7.4 97 4-112 32-145 (222)
29 6TJD_B Cake4; Beta-propeller, 51.1 48 0.00056 21.7 3.4 22 97-118 31-52 (164)
30 3SBG_A Pre-mRNA-splicing facto 47.0 39 0.00045 31.9 3.2 72 7-86 355-442 (565)
31 2QLC_F DNA repair protein radC 45.9 1.4E+02 0.0016 19.9 6.2 75 6-87 8-90 (126)
32 PF10893.12 ; Phage_186_Fil ; B 45.9 27 0.00031 24.5 1.5 12 95-106 21-32 (70)
33 PF21544.1 ; PorZ_N_b_propeller 45.1 65 0.00075 21.0 3.2 21 97-118 2-22 (153)
34 PF03744.17 ; BioW ; 6-carboxyh 44.3 26 0.0003 29.8 1.6 26 88-113 178-218 (233)
35 4D10_M COP9 SIGNALOSOME COMPLE 43.4 2.4E+02 0.0027 23.4 6.9 76 6-88 59-154 (334)
36 6GVW_B Lys-63-specific deubiqu 42.3 3E+02 0.0035 22.8 7.6 74 7-88 20-142 (295)
37 5FLG_A 6-CARBOXYHEXANOATE--COA 40.9 31 0.00036 29.8 1.5 26 88-113 195-237 (260)
38 PF11746.12 ; DUF3303 ; Domain 40.0 68 0.00079 20.6 2.7 33 56-88 28-60 (91)
39 7ADO_H ER membrane protein com 38.7 1.9E+02 0.0022 22.8 5.4 47 58-112 85-131 (210)
40 6TJE_A Cake5; Beta-propeller, 37.7 85 0.00098 21.2 3.0 22 97-118 31-52 (204)
41 5TVA_B 6-carboxyhexanoate--CoA 36.8 32 0.00037 29.4 1.0 24 88-111 182-222 (240)
42 PF21191.1 ; CvfB_1st ; CvfB fi 34.7 93 0.0011 20.7 2.7 26 14-39 33-62 (62)
43 PF18021.5 ; Agglutinin_C ; Agg 34.4 48 0.00055 23.1 1.4 22 94-115 74-95 (95)
44 6R5Y_E WD-40 repeat protein; R 32.1 1.4E+02 0.0016 19.2 3.3 24 97-120 144-167 (168)
45 PF16075.9 ; DUF4815 ; Domain o 31.4 3.5E+02 0.0041 25.7 6.7 59 27-88 389-450 (576)
46 PF09919.13 ; DUF2149 ; Unchara 31.3 1.4E+02 0.0016 21.9 3.3 20 21-40 73-92 (93)
47 4PV2_B L-ASPARAGINASE BETA SUB 29.8 2.5E+02 0.0029 20.0 4.5 32 1-38 76-107 (131)
48 6TJE_A Cake5; Beta-propeller, 29.6 1.6E+02 0.0018 19.9 3.3 22 97-118 151-172 (204)
49 2YMS_A OUTER MEMBRANE PROTEIN 29.5 1.6E+02 0.0018 18.4 3.1 20 97-116 12-31 (130)
50 6TJD_B Cake4; Beta-propeller, 29.2 1.8E+02 0.0021 19.0 3.4 22 97-118 111-132 (164)
51 7MRJ_B Ubiquitin domain-contai 28.3 63 0.00072 19.7 1.1 46 64-109 2-48 (105)
52 6R60_A WD-40 repeat protein; R 25.9 1.9E+02 0.0021 19.9 3.1 24 97-120 185-208 (209)
53 PF21420.1 ; Tautomerase-like ; 25.4 67 0.00078 21.1 0.8 11 98-108 33-43 (45)
54 6R5Z_F 9-bladed beta-propeller 25.3 2E+02 0.0023 17.2 2.9 24 97-120 103-126 (127)
55 6Y4L_B ER membrane protein com 25.1 2E+02 0.0024 22.5 3.6 26 58-87 74-99 (212)
56 PF01436.25 ; NHL ; NHL repeat 25.1 93 0.0011 11.6 3.4 23 96-118 6-28 (28)
57 PF21544.1 ; PorZ_N_b_propeller 24.9 2.3E+02 0.0026 18.4 3.3 21 97-118 91-111 (153)
58 3HXJ_C Pyrrolo-quinoline quino 24.8 2E+02 0.0023 21.5 3.4 22 97-118 269-290 (330)
59 PF18022.5 ; Lectin_C_term ; Ri 24.6 1.3E+02 0.0015 20.7 2.2 18 97-114 80-98 (98)
60 6NQ6_B N(4)-(Beta-N-acetylgluc 24.3 4.4E+02 0.0051 19.2 5.1 38 1-38 76-117 (144)
61 1L4Z_B Streptokinase; plasmino 24.1 2E+02 0.0023 22.9 3.3 46 68-113 48-95 (136)
62 2YMS_B OUTER MEMBRANE PROTEIN 24.0 2.1E+02 0.0025 15.4 3.0 20 97-116 11-30 (74)
63 PF07153.15 ; Marek_SORF3 ; Mar 23.9 48 0.00056 28.8 -0.0 8 100-107 13-20 (252)
64 PF20067.3 ; SSL_N ; Strictosid 23.3 1E+02 0.0012 16.9 1.3 12 97-108 35-46 (46)
65 PF08734.15 ; GYD ; GYD domain 22.7 1.8E+02 0.0021 20.0 2.6 29 59-88 35-65 (94)
66 PF16305.9 ; DUF4947 ; Domain o 22.6 4.1E+02 0.0047 22.1 4.8 41 3-43 110-162 (167)
67 1L4D_B STREPTOKINASE; streptok 22.5 2.3E+02 0.0027 22.2 3.3 45 69-113 35-81 (122)
68 PF16149.9 ; DUF4857 ; Domain o 22.4 1.8E+02 0.0021 25.2 3.0 66 26-118 166-231 (264)
69 3OT2_A Uncharacterized protein 22.3 37 0.00043 24.8 -0.9 40 79-118 111-150 (187)
70 4X00_B Putative hydrolase; Hyd 22.3 1.6E+02 0.0018 21.0 2.3 30 64-113 2-31 (283)
71 PF14781.10 ; BBS2_N ; Ciliary 21.6 1.4E+02 0.0016 22.1 1.9 16 98-113 14-29 (104)
72 3LYV_C Ribosome-associated fac 21.4 2E+02 0.0023 18.9 2.5 44 1-44 15-60 (66)
73 6UNC_A Metallophos domain-cont 21.2 1.1E+02 0.0013 24.3 1.4 47 59-105 241-304 (313)
74 3J8B_H Eukaryotic translation 21.1 6.4E+02 0.0074 22.3 6.1 52 58-119 112-166 (343)
75 6TJF_C Cake6; Beta-propeller, 21.1 2.8E+02 0.0033 19.3 3.3 22 97-118 31-52 (244)
76 PF02983.18 ; Pro_Al_protease ; 20.7 2.4E+02 0.0028 18.0 2.7 17 101-117 19-35 (56)
77 8F2B_B Guanine nucleotide-bind 20.6 32 0.00036 26.3 -1.6 52 67-118 5-60 (350)
78 3E38_A two-domain protein cont 20.2 6.9E+02 0.008 19.9 5.9 53 44-100 1-54 (343)
No 1
>PF14220.10 ; DUF4329 ; Domain of unknown function (DUF4329)
Probab=99.83 E-value=5.9e-20 Score=128.35 Aligned_cols=109 Identities=21% Similarity=0.245 Sum_probs=94.6 Template_Neff=10.100
Q ss_pred HHHHHHHHHHHhhhchhhCCeeEEEE--EEcCCCC--EEEeCCeecCCCeeecccc-------CCCCCceEEEEEecCCC
Q FD01543564_041 3 EDAALDALKNINNQSICSGTEYGGLI--CKDVKNK--YFATTPISGTNDGLTLSAL-------ACPQNTTNSADYHTHGM 71 (120)
Q Consensus 3 ~~~A~~~l~~lq~~Si~~nrEycG~I--~~d~~G~--~~~T~p~~G~~~sc~~~~~-------~~p~~~~~vAsyHTHGa 71 (120)
.++|+.++..++.+|+..++||+|+| .++.+|+ |++|.|..|...++.+ .+ ..|.+..+ |||||+
T Consensus 1 ~dAa~~~~~~~~~~s~~~~~e~~g~i~~~~~~~g~~~~~~t~p~~g~~~~~~~-~p~~~~~~~~~p~g~~~---~hth~~ 76 (136)
T B8F9G4_DESAL/1 1 LDATIDFEIRYNDDSIRNNVEYSTVVYSFTNENGKKQYVYDYPTIGTENSNPP-VPDSIYKDDLDYSMESL---NETHGA 76 (136)
T ss_pred CcHHHHHHHHhccccHhhCceeEEEEEEEECCCCCEEEEEecCcCCCCCcCCC-CCccccCcccCCCCeEE---EEecCC
Confidence 36899999999999999999999999 9999999 9999999999998876 21 01455553 999999
Q ss_pred ----CCCCcccC--------CCCHHHH---HHHHHhCCCCEEECCCceeEEEeCCCCEE
Q FD01543564_041 72 ----EEAGYENN--------KFSPLDI---SDNYKNYRNGYLGTPDGTFGKVDISYKTV 115 (120)
Q Consensus 72 ----~d~~yd~E--------vpS~~D~---~~d~~~gidGYvaTPgGrlw~~D~~~~~~ 115 (120)
+.+.+.++ .||..|+ ..+...++.+||+||+|+||++++.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~fs~~d~~~~~~~~~~~~~~Yl~~p~G~l~~y~~~~~~~ 135 (136)
T B8F9G4_DESAL/1 77 DDPNYSSNQLSPQDKVYARTLYERSDKKIDLPSYSGFPNGYLVCFKPSMEEIDPRTSWL 135 (136)
T ss_pred CCcccccCCCCHHHHHhhcccCChhhceeecccccCCCceEEEeCCCcEEEEecCCCCC
Confidence 78788888 9999999 88888889999999999999999987653
No 2
>1OI0_B HYPOTHETICAL PROTEIN AF2198; PROTEASOME, DEUBIQUITINATION, ARCHAEA, HYDROLASE; HET: 144; 1.5A {ARCHAEOGLOBUS FULGIDUS} SCOP: c.97.3.1
Probab=96.76 E-value=0.15 Score=35.14 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred HHHHHHHhhhchhhC-CeeEEEEEEcCCC--CEEEeCCeecCCCeeeccccCCCCCceEEEEEecCCCCCCCcccCCCCH
Q FD01543564_041 7 LDALKNINNQSICSG-TEYGGLICKDVKN--KYFATTPISGTNDGLTLSALACPQNTTNSADYHTHGMEEAGYENNKFSP 83 (120)
Q Consensus 7 ~~~l~~lq~~Si~~n-rEycG~I~~d~~G--~~~~T~p~~G~~~sc~~~~~~~p~~~~~vAsyHTHGa~d~~yd~EvpS~ 83 (120)
+.+++++...+.... .|.||++.-. ++ .-.+..++......+.......+.+..+++-||||-.. .-.||.
T Consensus 8 ~~~~~~~~~~~~~~~p~E~~G~l~g~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~HsHp~~-----~~~~S~ 81 (124)
T 1OI0_B 8 RGLLKTILEAAKSAHPDEFIALLSGS-KDVMDELIFLPFVSGSVSAVIHLDMLPIGMKVFGTVHSHPSP-----SCRPSE 81 (124)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEEEE-TTEEEEEEECCC-------------CCTTCEEEEEEEEESSS-----CCCCCH
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEEcc-CCeecEEEECCccCCCceeeecHHhccCCceEEEEEEcCCCC-----CCCCCH
Q ss_pred HHHHHHHHhCCCCEEECCC---ceeEEEeCCCCEEEEe
Q FD01543564_041 84 LDISDNYKNYRNGYLGTPD---GTFGKVDISYKTVTYQ 118 (120)
Q Consensus 84 ~D~~~d~~~gidGYvaTPg---Grlw~~D~~~~~~~~l 118 (120)
.|+..-...+.--.|..+. .++..+......+...
T Consensus 82 ~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T 1OI0_B 82 EDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELE 119 (124)
T ss_dssp HHHHHHHHSCSEEEEEETTCCTTCEEEECTTSCBCCCE
T ss_pred HHHHHHhhcCcEEEEEEcCCCcCcEEEEEeCCCEEEEE
No 3
>5LD9_B JAMM1; JAMM/MPN+, metalloprotease, isopeptidase, deubiquitination, hydrolase; 1.733A {Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)}
Probab=95.93 E-value=0.22 Score=34.58 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHhhhchhhCCeeEEEEEEcCCC--CEEEeCCeecCCCeeeccccCCCC--------CceEEEEEecCCCCCCCc
Q FD01543564_041 7 LDALKNINNQSICSGTEYGGLICKDVKN--KYFATTPISGTNDGLTLSALACPQ--------NTTNSADYHTHGMEEAGY 76 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nrEycG~I~~d~~G--~~~~T~p~~G~~~sc~~~~~~~p~--------~~~~vAsyHTHGa~d~~y 76 (120)
.+++.++.........|.||++.-...+ .++..+........+......... +..+++.||+|-.
T Consensus 18 ~~~~~~~~~~~~~~~~E~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~HsHp~----- 92 (140)
T 5LD9_B 18 QHYLRAILKVVSSSSVEVCGFLFGKENRVLKVRFIRNRLNSPVEFEMDPEEMLKALEEAEQENLEVVGIFHSHIA----- 92 (140)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEETTEEEEEEEECBTTCCSSCCCBCHHHHHHHHHHHHHTTCEEEEEEEEESS-----
T ss_pred HHHHHHHHHHHhcCCccEEEEEEEEeCCEEEEEEeecCCCCCceEEeCHHHHHHHHHHHHHcCccEEEEEECCCC-----
Q ss_pred ccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeC-CCCEEEEe
Q FD01543564_041 77 ENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDI-SYKTVTYQ 118 (120)
Q Consensus 77 d~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~-~~~~~~~l 118 (120)
.+..||..|+..-......-.|..+...+-.+.. ..+....+
T Consensus 93 ~~~~~S~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 135 (140)
T 5LD9_B 93 CPPIPSGKDLEGMKRWPVIWLIVNEKGEYKAWILSEKNKISEV 135 (140)
T ss_dssp SCSSCBHHHHHHHHHSCSEEEEEETTSCEEEEEC---CCCEEE
T ss_pred CCCCCCHHHHhhcccCCcEEEEEECCceEEEEEEccCCcEEEE
No 4
>2KKS_A Uncharacterized protein; NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown function; NMR {Desulfitobacterium hafniense}
Probab=95.03 E-value=0.83 Score=32.04 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHhhhchhh-CCeeEE-EEEEcCCCCEEEeCCeecCCCeeecccc-CCCC------------CceEEEEEecCCC
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGG-LICKDVKNKYFATTPISGTNDGLTLSAL-ACPQ------------NTTNSADYHTHGM 71 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG-~I~~d~~G~~~~T~p~~G~~~sc~~~~~-~~p~------------~~~~vAsyHTHGa 71 (120)
..++.+|....... ..|-|| +++....+.+.++....-......+... .-+. +..+++-||||..
T Consensus 6 ~~~~~~i~~~~~~~~~~e~~G~l~G~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~HsHp~ 85 (146)
T 2KKS_A 6 KKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNGWVMLGNFHSHPA 85 (146)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHTCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHCCCCeeEEEEEEecCCccEEEEEEECCCCCCCCCcEEeCHHHHHHHHHHHHHcCCeEEEEEEcCCC
Q ss_pred CCCCcccCCCCHHHHHHHHHhCCCCEEECCCc----eeEEEeCCCCEEEEe
Q FD01543564_041 72 EEAGYENNKFSPLDISDNYKNYRNGYLGTPDG----TFGKVDISYKTVTYQ 118 (120)
Q Consensus 72 ~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgG----rlw~~D~~~~~~~~l 118 (120)
....||..|+......+.--.|..+.+ .+-.+....+....+
T Consensus 86 -----~~~~~S~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 131 (146)
T 2KKS_A 86 -----TPARPSAEDKRLAFDPSLSYLIISLAEPQKPVCKSFLIKKDGVDEE 131 (146)
T ss_dssp -----SCSSCCHHHHTTCCSSSCEEEEEECSCSSSCEEEEEEECSSCEEEE
T ss_pred -----CCCCCCHHHHHHccCCCceEEEEEcCCCCCCEEEEEEEeCCceEEE
No 5
>PF14464.10 ; Prok-JAB ; Prokaryotic homologs of the JAB domain
Probab=94.98 E-value=0.93 Score=29.91 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred HHHHHHHHHHHhhhchhhCCeeEEEEEEcCCCCEEEeCCeecCCCe----eec-------------cccCCCCCceEEEE
Q FD01543564_041 3 EDAALDALKNINNQSICSGTEYGGLICKDVKNKYFATTPISGTNDG----LTL-------------SALACPQNTTNSAD 65 (120)
Q Consensus 3 ~~~A~~~l~~lq~~Si~~nrEycG~I~~d~~G~~~~T~p~~G~~~s----c~~-------------~~~~~p~~~~~vAs 65 (120)
.....+++..+... ...|-||++.-+.....+.-.+..-.... +.. ... ..+..+++.
T Consensus 2 ~~~~~~i~~~~~~~---~~~E~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ig~ 76 (114)
T Q9RXB3_DEIRA/6 2 APLRRALWAQVRRE---LPRECVGALGGWVRGEQVQAHALYPLPNVAADPEREYLADPGDLLRVVRAMQ--REGLDLVAL 76 (114)
T ss_pred hhHHHHHHHHHHHh---CCceEEEEEEEecCCceEEEEEccCCCCCCCCceeecCCCchhHHHHHHHhh--hCCceEEEE
Q ss_pred EecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEEC-CCceeEEEe
Q FD01543564_041 66 YHTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGT-PDGTFGKVD 109 (120)
Q Consensus 66 yHTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaT-PgGrlw~~D 109 (120)
||+|-. ....||..|+.... +...+|.. |.+..|+.+
T Consensus 77 ~HsHp~-----~~~~~S~~D~~~~~--~~~~~i~~~~~~~~~~~~ 114 (114)
T Q9RXB3_DEIRA/6 77 YHSHPH-----GPAAPSASDRRLAA--YPVPYLIADPAAEVLRAY 114 (114)
T ss_pred EeCCCC-----CCCCCCHHHHHHhc--cCCCEEEecchHhhhhcC
No 6
>3RZU_F STAM-binding protein; Ubiquitin Hydrolase, STAM, Endosome-associated deubiquitinating enzyme, HYDROLASE; HET: ZN; 2.5A {Homo sapiens} SCOP: c.97.3.1
Probab=93.46 E-value=2.9 Score=30.68 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHhhhchhh---CCeeEEEEEEcCCCCEE-----EeCCeecCCCeeeccccCCCC--------CceEEEEEecCC
Q FD01543564_041 7 LDALKNINNQSICS---GTEYGGLICKDVKNKYF-----ATTPISGTNDGLTLSALACPQ--------NTTNSADYHTHG 70 (120)
Q Consensus 7 ~~~l~~lq~~Si~~---nrEycG~I~~d~~G~~~-----~T~p~~G~~~sc~~~~~~~p~--------~~~~vAsyHTHG 70 (120)
..++..+....... +.|.||++.-...+.-+ +-.+.......+..... .. +..+++.||+|
T Consensus 24 ~~~~~~i~~~~~~~~~~~~E~~G~l~G~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vG~~hsH- 100 (187)
T 3RZU_F 24 GRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENE--EELFLIQDQQGLITLGWIHTH- 100 (187)
T ss_dssp TTHHHHHHHHTHHHHHTTCCCEEEEEEEECSSEEEEEEEEECCEEECSSCEEECCH--HHHHHHHHTTTCEEEEEEEEC-
T ss_pred ccHHHHHHHHHhhhcccCceEEEEEEEEEeCCeEEEEEEEecCCCCCCCeEeeCCH--HHHHHHHHhcCCEEEEEEEeC-
Q ss_pred CCCCCcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCCCEEEEec
Q FD01543564_041 71 MEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISYKTVTYQK 119 (120)
Q Consensus 71 a~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~~~~~~lc 119 (120)
|. ..-.||..|+..-..... ..|..-++.+++..+....+.
T Consensus 101 ---p~-~~~~~S~~D~~~~~~~~~----~~~~~~~~i~~~~~~~~~~f~ 141 (187)
T 3RZU_F 101 ---PT-QTAFLSSVDLHTHCSYQM----MLPESVAIVCSPKFQETGFFK 141 (187)
T ss_dssp ---SS-SCSCCCHHHHHHHHHHHH----HCTTCEEEEEEGGGTEEEEEE
T ss_pred ---CC-CCcccCHHHHHHHHHHHh----hCCCeEEEEECCCCCceeEEE
No 7
>2ZNR_A AMSH-like protease; metal binding protein, Alternative splicing, Hydrolase, Metal-binding, Metalloprotease, Protease, Ubl conjugation pathway, Zinc; HET: EDO; 1.2A {Homo sapiens} SCOP: c.97.3.1, l.1.1.1
Probab=92.82 E-value=2.3 Score=30.59 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred HHHHHHHhhhchhh---CCeeEEEEEEcCCCC-----EEEeCCeecCCCeeeccccCCCC--------CceEEEEEecCC
Q FD01543564_041 7 LDALKNINNQSICS---GTEYGGLICKDVKNK-----YFATTPISGTNDGLTLSALACPQ--------NTTNSADYHTHG 70 (120)
Q Consensus 7 ~~~l~~lq~~Si~~---nrEycG~I~~d~~G~-----~~~T~p~~G~~~sc~~~~~~~p~--------~~~~vAsyHTHG 70 (120)
.+++.++....... +.|.||++.-...+. .+.-.+..+....+....+ .. +..+++-||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~E~~G~l~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vg~~HsH- 91 (178)
T 2ZNR_A 15 EDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENV--EELFNVQDQHDLLTLGWIHTH- 91 (178)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCH--HHHHHHHHHHTCEEEEEEEEC-
T ss_pred HHHHHHHHHHHhhhcccCceEEEEEEEEEcCCeEEEEEEEecCCcCCCCeEEecCH--HHHHHHHhhCCcEEEEEEEcC-
Q ss_pred CCCCCcccCCCCHHHHHHHH-----HhCCCCEEECC---CceeEEEeCCCCEEEEec
Q FD01543564_041 71 MEEAGYENNKFSPLDISDNY-----KNYRNGYLGTP---DGTFGKVDISYKTVTYQK 119 (120)
Q Consensus 71 a~d~~yd~EvpS~~D~~~d~-----~~gidGYvaTP---gGrlw~~D~~~~~~~~lc 119 (120)
|. ....||..|+.... ....-..|..| .-+.|+.+........+|
T Consensus 92 ---p~-~~~~~S~~D~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 2ZNR_A 92 ---PT-QTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSAC 144 (178)
T ss_dssp ---SS-SCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGTEEEEEEECHHHHHHHHHC
T ss_pred ---CC-CCcccChHHHHhHHhHHhhCCCcEEEEeCCCCCccceEEEccccchHHHHh
No 8
>6FJV_A 26S proteasome regulatory subunit N11-like protein; deubiquitination, deubiquitylation, HYDROLASE; HET: SO4; 1.35A {Candidatus Caldiarchaeum subterraneum}
Probab=92.36 E-value=3.9 Score=27.94 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred HHHHHHHhhhchhh-CCeeEEEEEEcCCCCEEEeCCeecCCCeeeccccCCC-----------------CCceEEEEEec
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGGLICKDVKNKYFATTPISGTNDGLTLSALACP-----------------QNTTNSADYHT 68 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~p-----------------~~~~~vAsyHT 68 (120)
+.++.+|...+... ..|-||++.-..++..+......--......... . .+..+++-||+
T Consensus 14 ~~~~~~i~~~~~~~~~~e~~G~L~g~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ig~~hs 91 (155)
T 6FJV_A 14 PLALAKVVKHAASSLQREVAGLLVGKSAGKVLEIWDAVTGEQYGTPAYV--QLDEMVMAKVAEELSKSDKNLYIVGWYHS 91 (155)
T ss_dssp HHHHHHHHHHHHTCTTSCCEEEEEEEEETTEEEEEEEECSSCCSCC------CHHHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCceEEEEEEEEEcCeEEEEEEeecccccCCCeEE--EeCHHHHHHHHHHHHhcCCCCEEEEEEEC
Q ss_pred CCCCCCCcccCCCCHHHHHHHHH-----hCCCCEEECC------------CceeEEEeCCCCEEEE
Q FD01543564_041 69 HGMEEAGYENNKFSPLDISDNYK-----NYRNGYLGTP------------DGTFGKVDISYKTVTY 117 (120)
Q Consensus 69 HGa~d~~yd~EvpS~~D~~~d~~-----~gidGYvaTP------------gGrlw~~D~~~~~~~~ 117 (120)
| ...+-.||..|+..... .+.-..|..+ .-+.|+.+...+...+
T Consensus 92 h-----p~~~~~~s~~d~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (155)
T 6FJV_A 92 H-----PGLDVFLSPTDIDTQKRYQAMFSKAVALVVDPVDYAKTRRISSLKFKVFQISKEGRVVSL 152 (155)
T ss_dssp C-----TTSCSCCCHHHHHHHHHHHHHCTTCEEEEEECHHHHHHCCGGGCEEEEEEECTTCCEEEC
T ss_pred C-----CCCCCCCCHHHHHHHHHHHHhccCcEEEEEeCCccccccceeeeeeEEEEEccCCcEEEe
No 9
>4JXE_B AMSH-like protease sst2; Helix-beta-helix sandwich, ubiquitin, dequbiquitination, Zinc metalloprotease, deubiquitination, cytosol, hydrolase; HET: EDO, TRS; 1.451A {Schizosaccharomyces pombe}
Probab=89.05 E-value=9.3 Score=28.23 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHhhhchhh---CCeeEEEEEEcCCCC-----EEEeCCeecCCCeeeccccCCC--------CCceEEEEEecCC
Q FD01543564_041 7 LDALKNINNQSICS---GTEYGGLICKDVKNK-----YFATTPISGTNDGLTLSALACP--------QNTTNSADYHTHG 70 (120)
Q Consensus 7 ~~~l~~lq~~Si~~---nrEycG~I~~d~~G~-----~~~T~p~~G~~~sc~~~~~~~p--------~~~~~vAsyHTHG 70 (120)
..++.++....... +.|.||++.-...+. -.+-.+..+....+..... . .+..+++.||+|-
T Consensus 29 ~~~~~~~~~~~~~~~~~~~E~~G~l~G~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vG~~hshp 106 (197)
T 4JXE_B 29 KLLKKVFLDVVKPNTKKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDE--ASLFEFQDKHNLLTLGWIHTHP 106 (197)
T ss_dssp TTHHHHHHHHTHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCBCCCSSCCCBCCT--HHHHHHHHHTTCEEEEEEEECS
T ss_pred HHHHHHHHHHHchhccCCceEEEEEEEEEcCCEEEEEEEEeCCcccCCceeeeCCH--HHHHHHHHhCCCEEEEEEEcCC
Q ss_pred CCCCCcccCCCCHHHHHH
Q FD01543564_041 71 MEEAGYENNKFSPLDISD 88 (120)
Q Consensus 71 a~d~~yd~EvpS~~D~~~ 88 (120)
...+. ||..|+..
T Consensus 107 ~~~~~-----~S~~D~~~ 119 (197)
T 4JXE_B 107 TQTCF-----MSSVDLHT 119 (197)
T ss_dssp SSCSC-----CCHHHHHH
T ss_pred CCCCC-----CChHHHHH
No 10
>6FJU_A 26S proteasome regulatory subunit N11-like protein; deubiquitination, deubiquitylation, HYDROLASE; 1.65A {Candidatus Caldiarchaeum subterraneum}
Probab=89.03 E-value=6.2 Score=30.70 Aligned_cols=77 Identities=22% Similarity=0.205 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred HHHHHHHhhhchhh-CCeeEEEEEEc-CCCCEEEeCCe----ecCCCeeecccc-CC---------CCCceEEEEEecCC
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGGLICKD-VKNKYFATTPI----SGTNDGLTLSAL-AC---------PQNTTNSADYHTHG 70 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG~I~~d-~~G~~~~T~p~----~G~~~sc~~~~~-~~---------p~~~~~vAsyHTHG 70 (120)
..++..+...+... +.|.||++.-. .++.+.++... ......+..... .. ..+..+++.||+|
T Consensus 33 ~~~l~~i~~~a~~~~~~E~~G~L~G~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~HsH- 111 (228)
T 6FJU_A 33 PLALAKVVKHAASSLQREVAGLLVGKSAGKVLEIWDAVTGEQYGTPAYVQLDEMVMAKVAEELSKSDKNLYIVGWYHSH- 111 (228)
T ss_dssp HHHHHHHHHHHHTCTTSCCEEEEEEEEETTEEEEEEEEETGGGTCSSCGGGCHHHHHHHHHHHHHHSSCCEEEEEEEEC-
T ss_pred HHHHHHHHHHHHhcCCccEEEEEEEEEcCcEEEEEEeEeCCCCCCCcEEEeCHHHHHHHHHHHHhhCCCcEEEEEEeCC-
Q ss_pred CCCCCcccCCCCHHHHHH
Q FD01543564_041 71 MEEAGYENNKFSPLDISD 88 (120)
Q Consensus 71 a~d~~yd~EvpS~~D~~~ 88 (120)
-.....||..|+..
T Consensus 112 ----P~~~~~~S~~D~~~ 125 (228)
T 6FJU_A 112 ----PGLDVFLSPTDIDT 125 (228)
T ss_dssp ----TTTCSCCCHHHHHH
T ss_pred ----CCCCCCCCHHHHHH
No 11
>2OG4_A Pre-mRNA-splicing factor 8; isopeptidase, Jab1/MPN domain, pre-mRNA splicing, protein-protein interaction, Prp8p, pseudoenzyme, spliceosome activation, U5-200K protein, PROTEIN BINDING; 2.0A {Saccharomyces cerevisiae} SCOP: c.97.3.0
Probab=88.81 E-value=7.1 Score=31.98 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHHhhhchhhCCeeEEEEEEcCCCC--------EEEeCCeecCCCeeeccccCCCC--------CceEEEEEecCC
Q FD01543564_041 7 LDALKNINNQSICSGTEYGGLICKDVKNK--------YFATTPISGTNDGLTLSALACPQ--------NTTNSADYHTHG 70 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nrEycG~I~~d~~G~--------~~~T~p~~G~~~sc~~~~~~~p~--------~~~~vAsyHTHG 70 (120)
+.+|+++-..+-.. .|.||+++-..... .++-+|..|...+|.... +|. +..+++-+|||.
T Consensus 44 ~nll~~fi~iad~~-~E~~G~L~G~~~~d~~~v~eI~~i~~~pQ~g~~~~v~~~~--l~~~~~~~~~~~l~~lGwiHthp 120 (254)
T 2OG4_A 44 KNLLKKFIEISDVK-IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISN--IPDIGDLPDTEGLELLGWIHTQT 120 (254)
T ss_dssp HHHHHHHHHTSCSS-SCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECC--CCCCTTSTTCTTCEEEEEEEEES
T ss_pred HHHHHHHHHHhccc-ceeeEEeeEEecCCCCceEEEEEEEeCCCccccceEEEec--CCCcCCCcccCCCeeceeeecCC
Q ss_pred CCCCCcccCCCCHHHHH
Q FD01543564_041 71 MEEAGYENNKFSPLDIS 87 (120)
Q Consensus 71 a~d~~yd~EvpS~~D~~ 87 (120)
...+ .+|..|+.
T Consensus 121 ~~~~-----~lS~~Dv~ 132 (254)
T 2OG4_A 121 EELK-----FMAASEVA 132 (254)
T ss_dssp SCCS-----SCCHHHHH
T ss_pred CCCC-----CCCHHHHH
No 12
>2KCQ_A Mov34/MPN/PAD-1 family; NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, unknown function, NUCLEOTIDE-BINDING PROTEIN; NMR {Salinibacter ruber DSM 13855} SCOP: c.97.3.1, l.1.1.1
Probab=87.18 E-value=13 Score=26.31 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred HHHHHHHhhhchhh-CCeeEEEEEEcCC--CCEEEeCCeecCCCee-ecccc-CCC-------------CCceEEEEEec
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGGLICKDVK--NKYFATTPISGTNDGL-TLSAL-ACP-------------QNTTNSADYHT 68 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG~I~~d~~--G~~~~T~p~~G~~~sc-~~~~~-~~p-------------~~~~~vAsyHT 68 (120)
..++.+|....... ..|-||++.-... +.+.++.......... .+... ... .+..+++-||+
T Consensus 5 ~~~~~~i~~~~~~~~~~E~~G~l~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~Hs 84 (153)
T 2KCQ_A 5 PDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDVVGVYHS 84 (153)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCeeEEEEEEeCCCCCeEEEEEEEcccCCcccCCccEEeCHHHHHHHHHHHHHcCCeEEEEEEC
Q ss_pred CCCCCCCcccCCCCHHHHHHH-HHhCCCCEEECCCc-----eeEEEeCCCCEEEEe
Q FD01543564_041 69 HGMEEAGYENNKFSPLDISDN-YKNYRNGYLGTPDG-----TFGKVDISYKTVTYQ 118 (120)
Q Consensus 69 HGa~d~~yd~EvpS~~D~~~d-~~~gidGYvaTPgG-----rlw~~D~~~~~~~~l 118 (120)
|-...+ .||..|+..- ....+---+.+... ++|..+...+....+
T Consensus 85 Hp~~~~-----~~S~~D~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (153)
T 2KCQ_A 85 HPDHPA-----RPSATDLEEATFPGFTYVIVSVRDGAPEALTAWALAPDRSEFHRE 135 (153)
T ss_dssp CSSSSS-----SCCHHHHHTCCCTTSEEEEEEEETTEEEEEEEEEECTTCSCEEEE
T ss_pred CCCCCC-----CCCHHHHHhccCCCceEEEEEeeCCCcceeEEEEECCCCCccEEE
No 13
>4NQL_A AMSH-like protease sst2; JAMM domain, Zinc metalloprotease, protein complex, AMSH, heix-beta-helix sandwich, hydrolase, metal binding, K63-linked diubiquitin, Helix-beta-helix sandwich; HET: EDO; 2.3A {Schizosaccharomyces pombe}
Probab=84.63 E-value=15 Score=28.40 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred HHHHHHHHHHhhhchhhCCeeEEEEEEcCCCCEE-----EeCCeecCCCeeecccc-CCC-----CCceEEEEEecCCCC
Q FD01543564_041 4 DAALDALKNINNQSICSGTEYGGLICKDVKNKYF-----ATTPISGTNDGLTLSAL-ACP-----QNTTNSADYHTHGME 72 (120)
Q Consensus 4 ~~A~~~l~~lq~~Si~~nrEycG~I~~d~~G~~~-----~T~p~~G~~~sc~~~~~-~~p-----~~~~~vAsyHTHGa~ 72 (120)
..+...+-.+-..+-..+.|.||++.-......+ +.++..+....|..... ... .+..+++-||+|-..
T Consensus 53 ~~~~~~i~~~~~~~~~~~~E~~G~L~G~~~~~~~~V~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~HsHp~~ 132 (221)
T 4NQL_A 53 KLLKKVFLDVVKPNTKKNLATCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTHPTQ 132 (221)
T ss_dssp TTHHHHHHHHTHHHHHTTCCCEEEEEEEEETTEEEEEEEEECSEEECSSCEEESCHHHHHHHHHHHTCEEEEEEEECSSS
T ss_pred HHHHHHHHHHhchhccCCceEEEEEEEEEeCCEEEEEEEEecccccCCCeeeeCCHHHHHHHHHHCCCeEEEEEEcCCCC
Q ss_pred CCCcccCCCCHHHHHH
Q FD01543564_041 73 EAGYENNKFSPLDISD 88 (120)
Q Consensus 73 d~~yd~EvpS~~D~~~ 88 (120)
.+. ||..|+..
T Consensus 133 ~~~-----~S~~D~~~ 143 (221)
T 4NQL_A 133 TCF-----MSSVALHT 143 (221)
T ss_dssp CSC-----CCHHHHHH
T ss_pred CCC-----CCHHHHHH
No 14
>5M59_F Putative pre-mRNA splicing factor; Brr2, pre-mRNA splicing, RNA-helicase, Prp8, splicing; HET: ACT; 3.2A {Chaetomium thermophilum}
Probab=83.63 E-value=11 Score=31.51 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHHHHHHhhhchhhCCeeEEEEEEcCCCC--------EEEeCCeecCCCeeeccccCCC------CCceEEEEEecCC-C
Q FD01543564_041 7 LDALKNINNQSICSGTEYGGLICKDVKNK--------YFATTPISGTNDGLTLSALACP------QNTTNSADYHTHG-M 71 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nrEycG~I~~d~~G~--------~~~T~p~~G~~~sc~~~~~~~p------~~~~~vAsyHTHG-a 71 (120)
+.+|+++-..+-..- |.||+++-...+. -++-+|..|...+|.+... . .+..+++-+|||. .
T Consensus 48 ~nll~kfi~iad~~t-Ei~G~L~G~~~~~~~~v~eI~~iv~~pQ~g~~~~v~~~~~--~~~~~~~~~L~~lGWiHThp~~ 124 (276)
T 5M59_F 48 KNILKKFITIADLRV-QVAGFLYGCSPADNDQVKEIRCIVMVPQIGGNRSVQLPQH--LPQHEMLKGLEPLGLIHTMAGN 124 (276)
T ss_dssp HHHHHHHHHHSCSSS-CCEEEEEEECCSSCSSEEEEEEEEECSBEECSSCEECCSS--CCCCGGGTTCEEEEEEEEC--C
T ss_pred HHHHHHHHHHHcccC-eEEEEEeEecCCCCcceeEEEEEEeCCcccCCceecCCCc--hhHHHHHhcccccCccccCCCC
Q ss_pred CCCCcccCCCCHHHHH
Q FD01543564_041 72 EEAGYENNKFSPLDIS 87 (120)
Q Consensus 72 ~d~~yd~EvpS~~D~~ 87 (120)
..+. +|..|+.
T Consensus 125 ~~~~-----lS~~Dv~ 135 (276)
T 5M59_F 125 ELPY-----MSPADVT 135 (276)
T ss_dssp CCSS-----CCHHHHH
T ss_pred CCCC-----CChhhHH
No 15
>8BCE_J Pre-mRNA-processing-splicing factor 8; helicase, complex, ligand, HYDROLASE; HET: B09, EDO; 2.05A {Homo sapiens}
Probab=80.15 E-value=16 Score=29.78 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHhhhchhhCCeeEEEEEEcCCCC--------EEEeCCeecCCCeeeccccCCCCCc------eEEEEEecCCCC
Q FD01543564_041 7 LDALKNINNQSICSGTEYGGLICKDVKNK--------YFATTPISGTNDGLTLSALACPQNT------TNSADYHTHGME 72 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nrEycG~I~~d~~G~--------~~~T~p~~G~~~sc~~~~~~~p~~~------~~vAsyHTHGa~ 72 (120)
+++|+++-..+-..- |.||+++-..... .++-.|..|...+|..... .... .+|+-+|||..
T Consensus 51 ~nll~~fi~~a~~~~-E~~G~L~G~~~~~~~~~~~I~~i~~~pq~~~~~~~~~~~~--~~~~~~~~~l~~lGwiHthp~- 126 (263)
T 8BCE_J 51 KNVLKKFICISDLRA-QIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQ--LPQHEYLKEMEPLGWIHTQPN- 126 (263)
T ss_dssp HHHHHHHHHTCCSSS-CCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSS--CCCCGGGTTSEEEEEEEEESS-
T ss_pred HHHHHHHHHHhcccc-ceehhhcEecCCCCCceEEEEEEEEcCCCCCcceeeCCCC--CchHHHhccceeeEEeecCCC-
Q ss_pred CCCcccCCCCHHHHH
Q FD01543564_041 73 EAGYENNKFSPLDIS 87 (120)
Q Consensus 73 d~~yd~EvpS~~D~~ 87 (120)
....+|..|+.
T Consensus 127 ----~~~~lS~~Dv~ 137 (263)
T 8BCE_J 127 ----ESPQLSPQDVT 137 (263)
T ss_dssp ----CCSSCCHHHHH
T ss_pred ----CCCCCCHHHHH
No 16
>5CW6_A DrBRCC36; metalloprotease, METAL BINDING PROTEIN; 3.193A {Danio rerio}
Probab=79.57 E-value=26 Score=27.49 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHhhhchhh-CCeeEEEEE--EcCCCCEEEeCCeecC-----CCeeeccccCCC----------------CCceEE
Q FD01543564_041 8 DALKNINNQSICS-GTEYGGLIC--KDVKNKYFATTPISGT-----NDGLTLSALACP----------------QNTTNS 63 (120)
Q Consensus 8 ~~l~~lq~~Si~~-nrEycG~I~--~d~~G~~~~T~p~~G~-----~~sc~~~~~~~p----------------~~~~~v 63 (120)
.++..|-...... ..|.||++. .+.++.+.++...... .+.|..... . .+..++
T Consensus 13 ~v~~~i~~h~~~~~~~Ev~G~LlG~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iv 90 (262)
T 5CW6_A 13 DAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVIILRRSDKRKDRVEISPE--QLSAASTEAERLAEMTGRPMRVV 90 (262)
T ss_dssp HHHHHHHHHHTTCC--CCEEEEEEEECTTSEEEEEEEEEECC-------CCCCHH--HHHHHHHHHHHHHHHHSSCCEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEEEEcCCcEEEEEEEEEcccccCCCCeEEeCHH--HHHHHHHHHHHHHHHhCCCcEEE
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHH
Q FD01543564_041 64 ADYHTHGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 64 AsyHTHGa~d~~yd~EvpS~~D~~~ 88 (120)
+-||+|-.+.+ .||..|+..
T Consensus 91 GwyhShp~~~~-----~~S~~D~~~ 110 (262)
T 5CW6_A 91 GWYHSHPHITV-----WPSHVDVRT 110 (262)
T ss_dssp EEEEECSSSCS-----SCCHHHHHH
T ss_pred EEeeCCCCCCC-----CCCHHHHHH
No 17
>3RZV_A STAM-binding protein; Ubiquitin Hydrolase, STAM, Endosome-associated deubiquitinating enzyme, HYDROLASE; 1.67A {Homo sapiens} SCOP: c.97.3.1
Probab=75.93 E-value=50 Score=25.17 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred HHHHHHHHhhhchhh---CCeeEEEEEEcCCCC-----EEEeCCeecCCCeeeccccCCC--------CCceEEEEEecC
Q FD01543564_041 6 ALDALKNINNQSICS---GTEYGGLICKDVKNK-----YFATTPISGTNDGLTLSALACP--------QNTTNSADYHTH 69 (120)
Q Consensus 6 A~~~l~~lq~~Si~~---nrEycG~I~~d~~G~-----~~~T~p~~G~~~sc~~~~~~~p--------~~~~~vAsyHTH 69 (120)
...++.++-...... +.|-||++.-..... -.+..+.......+..... . .+..+++.||+|
T Consensus 47 ~~~~~~~l~~~~~~~~~~~~E~~G~L~G~~~~~~~~v~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vG~~hsH 124 (211)
T 3RZV_A 47 PGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENE--EELFLIQDQQGLITLGWIHTH 124 (211)
T ss_dssp ETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCH--HHHHHHHHHHTCEEEEEEEEC
T ss_pred cccHHHHHHHHHHhcccCCceEEEEEEEEEeCCEEEEEEEEeCCcccCCCeEEeCCH--HHHHHHHHhcCCEEEEEEEcC
Q ss_pred CCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 70 GMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 70 Ga~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~~~~~~l 118 (120)
-...+ .||..|+..-...... .|..-+..+++..+.+...
T Consensus 125 p~~~~-----~~S~~D~~~~~~~~~~----~~~~v~~ii~~~~~~~~~~ 164 (211)
T 3RZV_A 125 PTQTA-----FLSSVDLHTHCSYQMM----LPESVAIVCSPKFQETGFF 164 (211)
T ss_dssp TTSCS-----CCCHHHHHHHHHHHHH----CTTCEEEEEETTTTEEEEE
T ss_pred CCCCc-----ccCHHHHHHHHHHHhh----CCCeEEEEEcCCCCceEEE
No 18
>PF01398.25 ; JAB ; JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Probab=74.84 E-value=28 Score=21.77 Aligned_cols=80 Identities=8% Similarity=-0.078 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred HHHHHHHHHHhhhchhhCCeeEEEEEEcCCCC-----EEEeCCeecCCCeeeccccCCCCC------------ceEEEEE
Q FD01543564_041 4 DAALDALKNINNQSICSGTEYGGLICKDVKNK-----YFATTPISGTNDGLTLSALACPQN------------TTNSADY 66 (120)
Q Consensus 4 ~~A~~~l~~lq~~Si~~nrEycG~I~~d~~G~-----~~~T~p~~G~~~sc~~~~~~~p~~------------~~~vAsy 66 (120)
..+...+...-...-...+|.+|++.-...+. -.+..+............. ... ..+++.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~e~~G~l~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ 87 (113)
T EIF3H_HUMAN/34 10 GLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ--YQMEMMRSLRHVNIDHLHVGWY 87 (113)
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEEeeEEECCEEEEEEeEECCCCCCCCCCcchHH--HHHHHHHHHHhcchhhccceEE
Q ss_pred ecCCCCCCCcccCCCCHHHHHHHHH
Q FD01543564_041 67 HTHGMEEAGYENNKFSPLDISDNYK 91 (120)
Q Consensus 67 HTHGa~d~~yd~EvpS~~D~~~d~~ 91 (120)
||| |.. -.||..|+.....
T Consensus 88 hsh----p~~--~~~s~~d~~~~~~ 106 (113)
T EIF3H_HUMAN/34 88 QST----YYG--SFVTRALLDSQFS 106 (113)
T ss_pred Ece----ecc--cccCHHHHHHHHH
No 19
>6R8F_A Lys-63-specific deubiquitinase BRCC36; Complex, Deubiquitylation, Ubiquitin, Immune signalling, signaling protein; 3.8A {Homo sapiens}
Probab=71.35 E-value=77 Score=26.98 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHhhhchhh-CCeeEEEEEEcCCCCE-------------------------------EEeCCeecCCCeeecccc
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGGLICKDVKNKY-------------------------------FATTPISGTNDGLTLSAL 54 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG~I~~d~~G~~-------------------------------~~T~p~~G~~~sc~~~~~ 54 (120)
.+++..+....... ..|.||++.-...+.. ...+......+.+.....
T Consensus 16 ~~v~~~i~~ha~~~~~~Ev~GlLlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ei~~~ 95 (316)
T 6R8F_A 16 SDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPE 95 (316)
T ss_dssp HHHHHHHHHHHTSCSSSCCEEEEEEEEC-------------------------CCEEEEEEEEECCCCSCSSCCCCCCHH
T ss_pred HHHHHHHHHHHhccCCeeEeEEEEEEecCCCCCCccccccCccccccccccccceEEEEEEEEEcccCcCCCCeEEeCHH
Q ss_pred CC--------------CCCceEEEEEecCCCCCCCcccCCCCHHHHHHHHHh--CCCCEEE
Q FD01543564_041 55 AC--------------PQNTTNSADYHTHGMEEAGYENNKFSPLDISDNYKN--YRNGYLG 99 (120)
Q Consensus 55 ~~--------------p~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~d~~~--gidGYva 99 (120)
.. ..+..+|+-||+|=.+.+ .||..|+..-... ...++|+
T Consensus 96 ~l~~~~~~ae~~~~~~~~~~~vvGwyHSHP~~~~-----~pS~~Dl~tq~~~q~~~~~~v~ 151 (316)
T 6R8F_A 96 QLSAASTEAERLAELTGRPMRVVGWYHSHPHITV-----WPSHVDVRTQAMYQMMDQGFVG 151 (316)
T ss_dssp HHHHHHHHHHHHHHHHSSCCEEEEEEEECTTSCS-----SCCHHHHHHHHTTC------CC
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCcc-----CCCHHHHHHHHHHHHccCCeEE
No 20
>PF13509.10 ; S1_2 ; S1 domain
Probab=68.64 E-value=13 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred hhhchhhCCeeEEEEEEcCCCCEEEe
Q FD01543564_041 14 NNQSICSGTEYGGLICKDVKNKYFAT 39 (120)
Q Consensus 14 q~~Si~~nrEycG~I~~d~~G~~~~T 39 (120)
.+..+..+.++-.+|++|.+|++.+|
T Consensus 33 ~~~~~~~Gd~v~vfi~~d~~~~~~at 58 (60)
T B5EDF3_CITBB/4 33 VPEGLHPGEHVKVFVYLDSEDRLLAT 58 (60)
T ss_pred CCCCCCCCCEEEEEEEECCCCCEEEE
No 21
>PF03665.17 ; UPF0172 ; Uncharacterised protein family (UPF0172)
Probab=67.02 E-value=73 Score=23.31 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHHhhhchhhCC-eeEEEEEEcCCCC---EEEeCCeecCCCeeeccccCCC---------------CCceEEEEEe
Q FD01543564_041 7 LDALKNINNQSICSGT-EYGGLICKDVKNK---YFATTPISGTNDGLTLSALACP---------------QNTTNSADYH 67 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nr-EycG~I~~d~~G~---~~~T~p~~G~~~sc~~~~~~~p---------------~~~~~vAsyH 67 (120)
..++.++-..+..... |.||++.-...+. +.++....-......+. + .+..+++.||
T Consensus 6 ~~~~~~~~~h~~~~p~~e~~G~L~G~~~~~~~~~~i~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ivG~~h 81 (188)
T A7RMN9_NEMVE/2 6 ARAYAKMLLHASKYPHKAVNGVLLGEEVTHDGELYVLDAVPLFHHCLGLA----PLLEVALTQVDSYCKTLGHHIIGYYQ 81 (188)
T ss_pred HHHHHHHHHHHccCCCccccEEEEeeccCCCCeEEEEeeEeccCccccch----HHHHHHHHHHHHHHHHhCcEEEEEEE
Q ss_pred cCCCCCCCcccCCCCHHHHH
Q FD01543564_041 68 THGMEEAGYENNKFSPLDIS 87 (120)
Q Consensus 68 THGa~d~~yd~EvpS~~D~~ 87 (120)
+| |......+|..|..
T Consensus 82 sh----p~~~~~s~s~~~~~ 97 (188)
T A7RMN9_NEMVE/2 82 AN----EHIENNSPDNIAYK 97 (188)
T ss_pred cc----CCCCCCCcCHHHHH
No 22
>5CW4_C BRCA1/BRCA2-containing complex subunit 3; Metal dependent enzyme, METAL BINDING PROTEIN; HET: GOL, MSE; 2.543A {Camponotus floridanus}
Probab=65.92 E-value=85 Score=24.30 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHhhhchhh-CCeeEEEEEEcCCCC-----EEEeCCeecCCCeeeccccCCC-----------------CCceEE
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGGLICKDVKNK-----YFATTPISGTNDGLTLSALACP-----------------QNTTNS 63 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG~I~~d~~G~-----~~~T~p~~G~~~sc~~~~~~~p-----------------~~~~~v 63 (120)
..++.+|-...... ..|.||++.=..++. -.+-.+............+ + .+..+|
T Consensus 15 ~~~~~~i~~h~~~~~~~ev~G~L~G~~~~~~~~v~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iv 92 (255)
T 5CW4_C 15 TDVYMVCLQHALSTENFEVMGLLIGNFACGIAKISAVIILRRLDKKKDRVEISS--EQLLKAAAEAERLTVELNRPMRVL 92 (255)
T ss_dssp HHHHHHHHHHHTTCSSSCCEEEEEEEECSSEEEEEEEEECCC----------CH--HHHHHHHHHHHHHHHHHSSCCEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEEEEeCCEEEEEEEEEeeeccCCCCeEEeCH--HHHHHHHHHHHHHHHHhCCCcEEE
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHH
Q FD01543564_041 64 ADYHTHGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 64 AsyHTHGa~d~~yd~EvpS~~D~~~ 88 (120)
+-||+| ....-.||..|+..
T Consensus 93 G~yhsh-----p~~~~~~S~~d~~~ 112 (255)
T 5CW4_C 93 GWYHSH-----PHITVCPSHVDVRT 112 (255)
T ss_dssp EEEEEE-----ETSCSSCCHHHHHH
T ss_pred EeecCC-----CCCCCCCChHHHHH
No 23
>PF01011.25 ; PQQ ; PQQ enzyme repeat
Probab=63.80 E-value=24 Score=16.60 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEECCCceeEEEeCCCCEEEE
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTY 117 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~ 117 (120)
|+++..|+|..+|..+++...
T Consensus 4 ~~~~~~~~~~~~~~~~g~~~~ 24 (38)
T QUIA_ACIAD/229 4 FLCTPHNNIFAIDADSGKQLW 24 (38)
T ss_pred EEECCCCeEEEEECCCCCEEE
No 24
>5JOH_A COP9 signalosome complex subunit 5; COP9 signalosome, metal protease, inhibitor, HYDROXYLASE; HET: 6M3; 1.99A {Homo sapiens}
Probab=57.91 E-value=1.4e+02 Score=23.64 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHhhhchhhCC-eeEEEEEEcCCCC-----EEEeCCeecCCCeeeccccCCC---------------CCceEEEE
Q FD01543564_041 7 LDALKNINNQSICSGT-EYGGLICKDVKNK-----YFATTPISGTNDGLTLSALACP---------------QNTTNSAD 65 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nr-EycG~I~~d~~G~-----~~~T~p~~G~~~sc~~~~~~~p---------------~~~~~vAs 65 (120)
..++.++-..+..... |.||++.=..++. -.+..|..+....+..... . .+..+|+-
T Consensus 59 ~~a~~~i~~ha~~~~~~ev~G~LlG~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ivGw 136 (257)
T 5JOH_A 59 ALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAA--AYEYMAAYIENAKQVGRLENAIGW 136 (257)
T ss_dssp HHHHHHHHHHHHHTTTSCCEEEEEEEEETTEEEEEEEEECCC-------CCSHH--HHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCcceeEEEEEEEeCCEEEEEEEEecccCCCCceeeeeHH--HHHHHHHHHHHHHHhCCccceeEE
Q ss_pred EecCCCCCCCcccCCCCHHHHHHHH--HhCCCCEEE
Q FD01543564_041 66 YHTHGMEEAGYENNKFSPLDISDNY--KNYRNGYLG 99 (120)
Q Consensus 66 yHTHGa~d~~yd~EvpS~~D~~~d~--~~gidGYva 99 (120)
||+| |.+... ||..|+..-. ......+|+
T Consensus 137 yhSH----p~~~~~-~S~~D~~~~~~~~~~~~~~v~ 167 (257)
T 5JOH_A 137 YHSH----PGYGCW-LSGIDVSTQMLNQQFQEPFVA 167 (257)
T ss_dssp EEEC----TTTCSS-CCHHHHHHHHHHHHHTCSCEE
T ss_pred eecC----CCCCCc-CChHHHHHHHHHhhhCCCeEE
No 25
>4O8Y_A 26S proteasome regulatory subunit RPN8; MPN JAMM, deubiquitinase, HYDROLASE; HET: EDO; 1.95A {Saccharomyces cerevisiae} SCOP: c.97.3.1, l.1.1.1
Probab=56.21 E-value=1.2e+02 Score=22.21 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHHHHhhhchhhCCeeEEEEEEcCCCCEEEeCCeecCCCeeeccccCCC--------------------CCceEE
Q FD01543564_041 4 DAALDALKNINNQSICSGTEYGGLICKDVKNKYFATTPISGTNDGLTLSALACP--------------------QNTTNS 63 (120)
Q Consensus 4 ~~A~~~l~~lq~~Si~~nrEycG~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~p--------------------~~~~~v 63 (120)
.+...++...+........|.||++.=..++..+...-..--......... . .+..++
T Consensus 14 ~~~~~i~~~~~~~~~~~~~e~~G~L~G~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iv 91 (185)
T 4O8Y_A 14 LVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNS--DVWFLDHNYIENMNEMCKKINAKEKLI 91 (185)
T ss_dssp HHHHHHHHHHHHTTCCTTCCCEEEEEEECSSSEEEEEEEEECCEEEETTEE--EEEEECHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHhhcccCCCcEEEEEEEEeCCCEEEEEEEEEcceeeCCCCC--ceeeecHHHHHHHHHHHHHhCCCCCee
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHH
Q FD01543564_041 64 ADYHTHGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 64 AsyHTHGa~d~~yd~EvpS~~D~~~ 88 (120)
+-||+|-. ||..|+..
T Consensus 92 G~yhs~~~---------~s~~d~~~ 107 (185)
T 4O8Y_A 92 GWYHSGPK---------LRASDLKI 107 (185)
T ss_dssp EEEECCSS---------CCTTHHHH
T ss_pred EEEEcCCC---------CCHHHHHH
No 26
>7QP7_8 Eukaryotic translation initiation factor 3 subunit H; 48S, initiation, eIF3, ternary complex, translation, open state, RIBOSOME; HET: OMU, OMG, UR3, PSU, MA6, 5MC, A2M, OMC, 5MU; 3.7A {Homo sapiens}
Probab=54.38 E-value=1.2e+02 Score=25.48 Aligned_cols=76 Identities=9% Similarity=-0.053 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHhhhchhhC---CeeEE-EEEEcCCCCEEEeCCeecCCCeeeccccCC--------------CCCceEEEEEec
Q FD01543564_041 7 LDALKNINNQSICSG---TEYGG-LICKDVKNKYFATTPISGTNDGLTLSALAC--------------PQNTTNSADYHT 68 (120)
Q Consensus 7 ~~~l~~lq~~Si~~n---rEycG-~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~--------------p~~~~~vAsyHT 68 (120)
..++.+|-....... .|.|| +++...++.+.++....-............ -.+..+|+-||+
T Consensus 43 ~~v~~~I~~h~~~~~~~~~e~~G~LlG~~~~~~l~Vt~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGwYhS 122 (352)
T 7QP7_8 43 GLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQS 122 (352)
T ss_dssp HHHHHHHHTTTSCSSCSSCCCCEEEECCBCSSEECCCBCCCCCSSCSSSCCCCCTHHHHHHHTTTTTTCSCCCEEEEEEE
T ss_pred hHHHHHHHHHHHHhCCCCeeEEEEEEEEEECCEEEEEEEEECCCCCCCCCcchHHHHHHHHHHHHHHcCCCCceEEEEEE
Q ss_pred CCCCCCCcccCCCCHHHHHH
Q FD01543564_041 69 HGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 69 HGa~d~~yd~EvpS~~D~~~ 88 (120)
| | ....||..|+..
T Consensus 123 h----~--~~~~~s~~di~~ 136 (352)
T 7QP7_8 123 T----Y--YGSFVTRALLDS 136 (352)
T ss_dssp C----C--SSCCCCHHHHHH
T ss_pred e----c--CCchhhHHHHHH
No 27
>8PPL_I8 Eukaryotic translation initiation factor 3 subunit H; Nsp1, MERS, SARS, SARS-CoV2, ribosome, 40S ribosomal subunit, translation inhibition, coronavirus, 43S PIC, 43S pre-initiation complex; HET: G7M, 4AC, SAC, NMM, PSU, T6A, MG, UNX, H2U, GTP, OMC, 6MZ, 5MC, 1MG, 1MA, B8N, AME, OMU, A2M, OMG, 2MG, MA6; 2.65A {Homo sapiens}
Probab=54.38 E-value=1.2e+02 Score=25.48 Aligned_cols=76 Identities=9% Similarity=-0.053 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred HHHHHHHhhhchhhC---CeeEE-EEEEcCCCCEEEeCCeecCCCeeeccccCC--------------CCCceEEEEEec
Q FD01543564_041 7 LDALKNINNQSICSG---TEYGG-LICKDVKNKYFATTPISGTNDGLTLSALAC--------------PQNTTNSADYHT 68 (120)
Q Consensus 7 ~~~l~~lq~~Si~~n---rEycG-~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~--------------p~~~~~vAsyHT 68 (120)
..++.+|-....... .|.|| +++...++.+.++....-............ -.+..+|+-||+
T Consensus 43 ~~v~~~I~~h~~~~~~~~~e~~G~LlG~~~~~~l~Vt~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGwYhS 122 (352)
T 8PPL_I8 43 GLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQS 122 (352)
T ss_pred hHHHHHHHHHHHHhCCCCeeEEEEEEEEEECCEEEEEEEEECCCCCCCCCcchHHHHHHHHHHHHHHcCCCCceEEEEEE
Q ss_pred CCCCCCCcccCCCCHHHHHH
Q FD01543564_041 69 HGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 69 HGa~d~~yd~EvpS~~D~~~ 88 (120)
| | ....||..|+..
T Consensus 123 h----~--~~~~~s~~di~~ 136 (352)
T 8PPL_I8 123 T----Y--YGSFVTRALLDS 136 (352)
T ss_pred e----c--CCchhhHHHHHH
No 28
>5W83_B Ubiquitin carboxyl-terminal hydrolase RPN11; Protease, HYDROLASE; 1.554A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} SCOP: c.97.3.1
Probab=53.91 E-value=1.4e+02 Score=22.34 Aligned_cols=97 Identities=16% Similarity=-0.016 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred HHHHHHHHHHhhhchhhCCeeEEEEE--EcCCCCEEEeCCeecCCCeeecccc-CCCCCce--------------EEEEE
Q FD01543564_041 4 DAALDALKNINNQSICSGTEYGGLIC--KDVKNKYFATTPISGTNDGLTLSAL-ACPQNTT--------------NSADY 66 (120)
Q Consensus 4 ~~A~~~l~~lq~~Si~~nrEycG~I~--~d~~G~~~~T~p~~G~~~sc~~~~~-~~p~~~~--------------~vAsy 66 (120)
.+...++...+. ....|.||++. .+.++.+.++....-....-..... .-+.... +|+-|
T Consensus 32 ~~~~~i~~h~~~---~~~~ev~G~L~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGwy 108 (222)
T 5W83_B 32 IALLKMLKHGRA---GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWY 108 (222)
T ss_dssp HHHHHHHHHHHH---HTTSCCEEEEEEEEEETTEEEEEEEEECCCC-------CCCHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHHhc---CCCceeeEEEEEEEeCCcEEEEEEEEECCcCCCCceEEecCHHHHHHHHHHHHHhCCCccEEEec
Q ss_pred ecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCC
Q FD01543564_041 67 HTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISY 112 (120)
Q Consensus 67 HTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~ 112 (120)
|+|-..... +|..|+..-...... .|..-+..+|+..
T Consensus 109 hshp~~~~~-----~s~~d~~~~~~~~~~----~~~~i~li~d~~~ 145 (222)
T 5W83_B 109 HSHPGFGCW-----LSSVDVNTQKSFEQL----NSRAVAVVVDPIQ 145 (222)
T ss_dssp EECTTTCSC-----CCHHHHHHHHHHHHH----CTTCEEEEEETTG
T ss_pred cCCCCCccc-----CCHHHHHHHHHHHhh----CCCeEEEEEcCcc
No 29
>6TJD_B Cake4; Beta-propeller, computationally designed, symmetrical, repeat protein, DE NOVO PROTEIN; HET: MPD; 2.1A {synthetic construct}
Probab=51.09 E-value=48 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|.+|.|+++|+.+.....+
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~~ 52 (164)
T 6TJD_B 31 YVGSNDGHLYAINPDGTEKWRF 52 (164)
T ss_dssp EEECTTSEEEEECTTSCEEEEE
T ss_pred EEEeCCCeEEEECCCCCEEEEE
No 30
>3SBG_A Pre-mRNA-splicing factor 8; Prp8p, RNaseH domain, Jab1/MPN domain, SPLICING; 3.28A {Saccharomyces cerevisiae}
Probab=47.00 E-value=39 Score=31.92 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred HHHHHHHhhhchhhCCeeEEEEEEcCCC--------CEEEeCCeecCCCeeeccccCCCC--------CceEEEEEecCC
Q FD01543564_041 7 LDALKNINNQSICSGTEYGGLICKDVKN--------KYFATTPISGTNDGLTLSALACPQ--------NTTNSADYHTHG 70 (120)
Q Consensus 7 ~~~l~~lq~~Si~~nrEycG~I~~d~~G--------~~~~T~p~~G~~~sc~~~~~~~p~--------~~~~vAsyHTHG 70 (120)
+.+|.++-..+-... |.||+++--..- .-++.+|..|..++|.... +|. +..++.-+|||.
T Consensus 355 knLl~kFi~iad~nT-E~~G~L~G~~~~d~~~v~eI~~lvippQ~gt~~sv~~~~--lp~~~~~~~l~~L~~LGWIHThp 431 (565)
T 3SBG_A 355 KNLLKKFIEISDVKI-QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISN--IPDIGDLPDTEGLELLGWIHTQT 431 (565)
T ss_dssp HHHHHHHHHHSCSSS-CCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECC--CCCCTTSTTCTTCEEEEEEEEES
T ss_pred HHHHHHHHHHhchhH-HHhhHHhcCCcCCCCCeEEEEEEEecCCCccccEEEecC--CCCCCCCCCchhchhcceeeccc
Q ss_pred CCCCCcccCCCCHHHH
Q FD01543564_041 71 MEEAGYENNKFSPLDI 86 (120)
Q Consensus 71 a~d~~yd~EvpS~~D~ 86 (120)
. .....|..|+
T Consensus 432 ~-----~~~fLSs~Dl 442 (565)
T 3SBG_A 432 E-----ELKFMAASEV 442 (565)
T ss_dssp S-----CCSSCCHHHH
T ss_pred c-----ccccccHHHH
No 31
>2QLC_F DNA repair protein radC homolog; DNA repair protein, RadC, MCSG, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; 2.3A {Chlorobium tepidum TLS}
Probab=45.93 E-value=1.4e+02 Score=19.86 Aligned_cols=75 Identities=15% Similarity=0.000 Sum_probs=0.0 Template_Neff=11.400
Q ss_pred HHHHHHHHhhhchhhCCeeEEEEEEcCCCCEEEeCCeecCCCeeeccccCCCCCc--------eEEEEEecCCCCCCCcc
Q FD01543564_041 6 ALDALKNINNQSICSGTEYGGLICKDVKNKYFATTPISGTNDGLTLSALACPQNT--------TNSADYHTHGMEEAGYE 77 (120)
Q Consensus 6 A~~~l~~lq~~Si~~nrEycG~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~p~~~--------~~vAsyHTHGa~d~~yd 77 (120)
++++..-++..=-..+.|-+-.+..|.++++........+........+ ..-. ..+--.|.|..-.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~e~~~~~~ld~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~a~~~v~~~~~~~~~~~-- 83 (126)
T 2QLC_F 8 ARDVFEYMKGRIPDETKEHLFVLFLSTKNQILRHETITIGTLTASLIHP--REIFKAAIRESAHSIILVHNHPSGDVQ-- 83 (126)
T ss_dssp HHHHHHHHTTCCSCTTSCEEEEEEECTTSBEEEEEEEECCTTCTTTSSH--HHHHHHHHHTTCSEEEEEEECTTSCCC--
T ss_pred HHHHHHHHHccCCCCCeEEEEEEEEcCCCCEEEEEEEeeCCCCceeeCH--HHHHHHHHhCCCCEEEEEecCCCCCCC--
Q ss_pred cCCCCHHHHH
Q FD01543564_041 78 NNKFSPLDIS 87 (120)
Q Consensus 78 ~EvpS~~D~~ 87 (120)
||..|+.
T Consensus 84 ---~~~~d~~ 90 (126)
T 2QLC_F 84 ---PSNADKQ 90 (126)
T ss_dssp ---CCHHHHH
T ss_pred ---CCHHHHH
No 32
>PF10893.12 ; Phage_186_Fil ; Bacteriophage 186, Fil
Probab=45.90 E-value=27 Score=24.51 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred CCEEECCCceeE
Q FD01543564_041 95 NGYLGTPDGTFG 106 (120)
Q Consensus 95 dGYvaTPgGrlw 106 (120)
.|||-||+||.|
T Consensus 21 hGWIe~pnGrrw 32 (70)
T D4DZ75_SEROD/5 21 RGWLECPDGRFF 32 (70)
T ss_pred CCEEECCCCCee
No 33
>PF21544.1 ; PorZ_N_b_propeller ; TSS9, PorZ, N-terminal beta-propeller domain
Probab=45.12 E-value=65 Score=20.97 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|.+| |+++|+.+++...+
T Consensus 2 w~~t~~g-l~~~~~~~~~~~~~ 22 (153)
T E0NPG1_9BACT/4 2 FVLSSGS-LFAYRQSDNSIQLY 22 (153)
T ss_pred EEeccCc-eEEEECCCCeEEee
No 34
>PF03744.17 ; BioW ; 6-carboxyhexanoate--CoA ligase
Probab=44.33 E-value=26 Score=29.77 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred HHHHhCCCCEEECC---------------CceeEEEeCCCC
Q FD01543564_041 88 DNYKNYRNGYLGTP---------------DGTFGKVDISYK 113 (120)
Q Consensus 88 ~d~~~gidGYvaTP---------------gGrlw~~D~~~~ 113 (120)
+|.-+..-||||++ |||++|+++...
T Consensus 178 SDDP~YttGYVAs~~gY~Ri~~lK~~G~~GGRvffv~~~~~ 218 (233)
T BIOW_META3/3-2 178 SDNNSYTTGYVATKNGYFRITNLKQENENGGRVFFVKNDTN 218 (233)
T ss_pred eCCCCCCCcEEEeCCcEEEeeccccccCCccEEEEECCCCC
No 35
>4D10_M COP9 SIGNALOSOME COMPLEX SUBUNIT 5; SIGNALING PROTEIN; 3.8A {HOMO SAPIENS}
Probab=43.39 E-value=2.4e+02 Score=23.42 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred HHHHHHHHhhhchhhCCeeEEEEEEcCCCCEE-----EeCCeecCCCeeeccccCCC---------------CCceEEEE
Q FD01543564_041 6 ALDALKNINNQSICSGTEYGGLICKDVKNKYF-----ATTPISGTNDGLTLSALACP---------------QNTTNSAD 65 (120)
Q Consensus 6 A~~~l~~lq~~Si~~nrEycG~I~~d~~G~~~-----~T~p~~G~~~sc~~~~~~~p---------------~~~~~vAs 65 (120)
...+++-+....-....|.||++.-..++..+ +-.|.......+..... + .+..+|+-
T Consensus 59 ~~~~~~i~~h~~~~~~~ev~G~LlG~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ivGw 136 (334)
T 4D10_M 59 ALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAA--AYEYMAAYIENAKQVGRLENAIGW 136 (334)
T ss_dssp HHHHHHHHHHHHHTTTSCCEEEEEEEEETTEEEEEEEEECCCSCTTTSTTGGGG--GHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCceeeEEEEEEEeCCEEEEEEEEeCCccCccceeeeeHH--HHHHHHHHHHHHHHcCCCccEEEE
Q ss_pred EecCCCCCCCcccCCCCHHHHHH
Q FD01543564_041 66 YHTHGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 66 yHTHGa~d~~yd~EvpS~~D~~~ 88 (120)
||||-.+.+. ||..|+..
T Consensus 137 yhshp~~~~~-----~s~~D~~~ 154 (334)
T 4D10_M 137 YHSHPGYGCW-----LSGIDVST 154 (334)
T ss_dssp EEECTTTCSC-----CCHHHHHH
T ss_pred EEeCCCCCcc-----cccccHHH
No 36
>6GVW_B Lys-63-specific deubiquitinase BRCC36; Deubiquitinase complex, DUB, Lysine-63 linkage specific, BRCC36-containing, BRCA1A binding, SIGNALING PROTEIN; 3.75A {Mus musculus}
Probab=42.30 E-value=3e+02 Score=22.83 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred HHHHHHHhhhchhh-CCeeEEEEEEcCCCC--------------------------EEEeCCe-----ecCCCeeeccc-
Q FD01543564_041 7 LDALKNINNQSICS-GTEYGGLICKDVKNK--------------------------YFATTPI-----SGTNDGLTLSA- 53 (120)
Q Consensus 7 ~~~l~~lq~~Si~~-nrEycG~I~~d~~G~--------------------------~~~T~p~-----~G~~~sc~~~~- 53 (120)
..++..|-...... ..|.||++.=..++. +.++... ....+.+....
T Consensus 20 ~~v~~~i~~h~~~~~~~ev~G~LlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 99 (295)
T 6GVW_B 20 SDAFLVCLNHALSTEKEEVMGLCIGELNDDIRSDSKFTYTGTEMRTVQEKMDTIRIVHIHSVIILRRSDKRKDRVEISPE 99 (295)
T ss_dssp HHHHHHHHHHHTTCSSSCCEEEEEEEEEECC----------------------CEEEEEEEEEEECCSSCSSSCCCCCHH
T ss_pred HHHHHHHHHHHhcCCCeeEEEEEEEEEecCcccCccccccCcccccccccccceEEEEEEEEEEcccCcCCCCcEeeCHH
Q ss_pred ----------------cCCCCCceEEEEEecCCCCCCCcccCCCCHHHHHH
Q FD01543564_041 54 ----------------LACPQNTTNSADYHTHGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 54 ----------------~~~p~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~ 88 (120)
. .+..+|+-||+|-...+. ||..|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~---~~~~vvGwyhShp~~~~~-----pS~~D~~~ 142 (295)
T 6GVW_B 100 QLSAASTEAERLAELTG---RPMRVVGWYHSHPHITVW-----PSHVDVRT 142 (295)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCEEEEEEEEETTSCSS-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---CCceEEEeecCCCCceec-----CCHHHHHH
No 37
>5FLG_A 6-CARBOXYHEXANOATE--COA LIGASE; LIGASE; HET: ANP, PML; 2.04A {BACILLUS SUBTILIS}
Probab=40.91 E-value=31 Score=29.82 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred HHHHhCCCCEEECCC-----------------ceeEEEeCCCC
Q FD01543564_041 88 DNYKNYRNGYLGTPD-----------------GTFGKVDISYK 113 (120)
Q Consensus 88 ~d~~~gidGYvaTPg-----------------Grlw~~D~~~~ 113 (120)
+|.-+.+-||||+++ ||++|+++...
T Consensus 195 SDDP~YttGYVAs~~~GY~Ri~~lK~~G~~~GGRvffv~~~~~ 237 (260)
T 5FLG_A 195 SDDPDYITGYVAGKKMGYQRITAMKEYGTEEGCRVFFIDGSND 237 (260)
T ss_dssp CCCTTCCCEEEEETTTEEEEESCSSCTTCCCCEEEEEECCSSC
T ss_pred cCCCCCCCeeEEeccCCeEEeecccccCCCCCcEEEEECCCCC
No 38
>PF11746.12 ; DUF3303 ; Domain of unknown function (DUF3303)
Probab=40.00 E-value=68 Score=20.60 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred CCCCceEEEEEecCCCCCCCcccCCCCHHHHHH
Q FD01543564_041 56 CPQNTTNSADYHTHGMEEAGYENNKFSPLDISD 88 (120)
Q Consensus 56 ~p~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~ 88 (120)
.|.|..+++.||+.|.++--.--|.+|.+++..
T Consensus 28 ~~~g~~~~~~~~~~g~~~~~~i~ea~~~~~~~~ 60 (91)
T A0A371WVQ1_9HY 28 LPEGVTYINSWIEPSFRRCFQLMDCNDARLLQQ 60 (91)
T ss_pred CCCCcEEEEEEEecCCCeEEEEEEeCCHHHHHH
No 39
>7ADO_H ER membrane protein complex subunit 8; ER membrane protein, EMC, Membrane protein biogenesis, MEMBRANE PROTEIN; HET: NAG, PCW; 3.39A {Homo sapiens}
Probab=38.74 E-value=1.9e+02 Score=22.81 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCceEEEEEecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCC
Q FD01543564_041 58 QNTTNSADYHTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISY 112 (120)
Q Consensus 58 ~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~ 112 (120)
.+..+|+-||.| |.+....||..|..-...-.-. -|+.-++.+|+..
T Consensus 85 ~~~~IvG~Yhsh----~~~~~~~~s~~~~~ia~~i~~~----~~~~~~lvvd~~~ 131 (210)
T 7ADO_H 85 HSYVIAGYYQAN----ERVKDASPNQVAEKVASRIAEG----FSDTALIMVDNTK 131 (210)
T ss_dssp GTCEEEEEEEEC----SBSSCCCCCHHHHHHHHHHTTT----SSCCEEEEBCCSS
T ss_pred CCceEEEEEEcC----cccCCCCchHHHHHHHHHHHhh----CCCCEEEEEeccc
No 40
>6TJE_A Cake5; Beta-propeller, computationally designed, symmetrical, repeat protein, DE NOVO PROTEIN; 3.15A {synthetic construct}
Probab=37.72 E-value=85 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|..|.|+++|..+.....+
T Consensus 31 ~~~~~~g~l~~~~~~~~~~~~~ 52 (204)
T 6TJE_A 31 YVGSNDGHLYAINPDGTEKWRF 52 (204)
T ss_dssp ECCCTTSCCEEECTTSCEEEEC
T ss_pred EEEEcCCeEEEECCCCCeEEEe
No 41
>5TVA_B 6-carboxyhexanoate--CoA ligase; Pimeloyl-CoA Ligase, adenylation, LIGASE; HET: COA, AMP; 2.25A {Aquifex aeolicus}
Probab=36.76 E-value=32 Score=29.41 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=0.0 Template_Neff=5.100
Q ss_pred HHHHhCCCCEEECCC-----------------ceeEEEeCC
Q FD01543564_041 88 DNYKNYRNGYLGTPD-----------------GTFGKVDIS 111 (120)
Q Consensus 88 ~d~~~gidGYvaTPg-----------------Grlw~~D~~ 111 (120)
+|.-+..-||||+++ ||++|+++.
T Consensus 182 SDDPdYttGYVAs~~~GY~Ri~~lK~~G~~~GGRvffv~~~ 222 (240)
T 5TVA_B 182 SDDPDYVTGYVSGKEIGYVRITPLKEKGDPLGGRVYFVSRK 222 (240)
T ss_dssp CSSTTCCCEEEEETTTEEEEEECSSCTTCCCCEEEEEECGG
T ss_pred eCCCCCCCcEEEeCCCCeEEeeccccCCCCCCcEEEEEChh
No 42
>PF21191.1 ; CvfB_1st ; CvfB first S1-like domain
Probab=34.68 E-value=93 Score=20.65 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred hhh----chhhCCeeEEEEEEcCCCCEEEe
Q FD01543564_041 14 NNQ----SICSGTEYGGLICKDVKNKYFAT 39 (120)
Q Consensus 14 q~~----Si~~nrEycG~I~~d~~G~~~~T 39 (120)
|+. -+..+.+|--+|+.|++|++.+|
T Consensus 33 ~~~~~~~~~~~Gd~~~V~l~~D~~~rl~at 62 (62)
T A0A0R2A5J3_9LA 33 LPSLKQLWPQNGDRLMIALKIDHKGRLWGE 62 (62)
T ss_pred CCccccCCCCCCCEEEEEEEECCCCCEEEC
No 43
>PF18021.5 ; Agglutinin_C ; Agglutinin C-terminal
Probab=34.36 E-value=48 Score=23.08 Aligned_cols=22 Identities=18% Similarity=-0.047 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCCEEECCCceeEEEeCCCCEE
Q FD01543564_041 94 RNGYLGTPDGTFGKVDISYKTV 115 (120)
Q Consensus 94 idGYvaTPgGrlw~~D~~~~~~ 115 (120)
++-++....+++++++|+++++
T Consensus 74 ~N~~i~~~~~~~~~iEPQt~~i 95 (95)
T A0A0C3KNT4_9AG 74 YNWYLSPDLFSLVFFDAQSGKE 95 (95)
T ss_pred EEEEEeCCCCeEEEEcCCCCCC
No 44
>6R5Y_E WD-40 repeat protein; Repeat Protein, Fragment Amplification, Protein Evolution, Protein Design, UNKNOWN FUNCTION; 2.15A {Nostoc punctiforme}
Probab=32.12 E-value=1.4e+02 Score=19.22 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=0.0 Template_Neff=13.500
Q ss_pred EEECCCceeEEEeCCCCEEEEecC
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQKN 120 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~lcg 120 (120)
++++..|+|+.+|..++.+..+.+
T Consensus 144 ~~~~~~~~i~~~d~~~~~~~~~~~ 167 (168)
T 6R5Y_E 144 ASASDDKTVKLWNRNGQLLQTLTG 167 (168)
T ss_dssp EEEETTSCEEEEETTSCEEEEEC-
T ss_pred EEEeCCCeEEEEeCCcceeeeecC
No 45
>PF16075.9 ; DUF4815 ; Domain of unknown function (DUF4815)
Probab=31.41 E-value=3.5e+02 Score=25.71 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred EEEEcCCCCEEEeCCeecCCCeeeccccCCCCCceEEEEEecCCCCCC---CcccCCCCHHHHHH
Q FD01543564_041 27 LICKDVKNKYFATTPISGTNDGLTLSALACPQNTTNSADYHTHGMEEA---GYENNKFSPLDISD 88 (120)
Q Consensus 27 ~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~p~~~~~vAsyHTHGa~d~---~yd~EvpS~~D~~~ 88 (120)
.|+.+++|++.+ .+|..+...|..|..|.+...+|..|....-++ ...+..+...||..
T Consensus 389 ~i~l~~~G~~~~---~~G~~~~~~P~~P~~~~~~l~La~i~~~~~~~~~i~~~~~rr~tm~di~~ 450 (576)
T A6WZ08_BRUA4/1 389 ALCMDTTGALVY---VAGVSAVSRPRPPVISSTMIELARIANDWGRKPVVEPTGVRNVPYNEIQD 450 (576)
T ss_pred EEEECCCCCEEE---EcCccccCCCCCCCCCCCceEEEEEEeCCCCCCEEeeccceEeCHHHHHH
No 46
>PF09919.13 ; DUF2149 ; Uncharacterized conserved protein (DUF2149)
Probab=31.33 E-value=1.4e+02 Score=21.86 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred CCeeEEEEEEcCCCCEEEeC
Q FD01543564_041 21 GTEYGGLICKDVKNKYFATT 40 (120)
Q Consensus 21 nrEycG~I~~d~~G~~~~T~ 40 (120)
..|=-|.+||+++|++++-+
T Consensus 73 ~G~~lGtaYrl~~G~~iyVp 92 (93)
T Q5LCB9_BACFN/1 73 RGKKVGVAYELENGKIIYVP 92 (93)
T ss_pred CceEEEEEEEcCCCCEEEec
No 47
>4PV2_B L-ASPARAGINASE BETA SUBUNIT; metal binding sites, potassium coordination, K-dependent enzyme, Ntn-hydrolase, plant protein, L-asparaginase, isoaspartyl aminopeptidase, amidohydrolase, HYDROLASE; HET: NO3; 1.79A {Phaseolus vulgaris}
Probab=29.82 E-value=2.5e+02 Score=19.98 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CHHHHHHHHHHHHhhhchhhCCeeEEEEEEcCCCCEEE
Q FD01543564_041 1 SEEDAALDALKNINNQSICSGTEYGGLICKDVKNKYFA 38 (120)
Q Consensus 1 ~~~~~A~~~l~~lq~~Si~~nrEycG~I~~d~~G~~~~ 38 (120)
+..++++++|.++.. ...+|.|..|.+|++.+
T Consensus 76 ~~~~a~~~~~~~~~~------~~~~G~i~i~~~G~~~~ 107 (131)
T 4PV2_B 76 KLHQAVDFVIKHRLD------EGKAGLIAVSNTGEVAC 107 (131)
T ss_dssp CHHHHHHHHHHHSCS------SCCEEEEEEETTSCEEE
T ss_pred CHHHHHHHHHHHhcc------CCceEEEEEcCCCCEEE
No 48
>6TJE_A Cake5; Beta-propeller, computationally designed, symmetrical, repeat protein, DE NOVO PROTEIN; 3.15A {synthetic construct}
Probab=29.61 E-value=1.6e+02 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.300
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|..|.|+++|........+
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~ 172 (204)
T 6TJE_A 151 YVGSNDGHLYAINPDGTEKWRF 172 (204)
T ss_dssp EEECTTSEEEEECTTSSEEEEE
T ss_pred EEEecCCeEEEECCCCCEEEEE
No 49
>2YMS_A OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB; CHAPERONE, PROPELLER STRUCTURE, ASSEMBLED FROM FRAGMENTS, NINE BLADES; 2.101A {ESCHERICHIA COLI}
Probab=29.47 E-value=1.6e+02 Score=18.38 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEECCCceeEEEeCCCCEEE
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVT 116 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~ 116 (120)
|+++..|+|..+|..+++..
T Consensus 12 ~~~~~~~~l~~~d~~~g~~~ 31 (130)
T 2YMS_A 12 YAADRAGLVKALNADDGKEI 31 (130)
T ss_dssp EEECTTSEEEEEETTTCCEE
T ss_pred EEEcCCCeEEEEECCCCcEE
No 50
>6TJD_B Cake4; Beta-propeller, computationally designed, symmetrical, repeat protein, DE NOVO PROTEIN; HET: MPD; 2.1A {synthetic construct}
Probab=29.17 E-value=1.8e+02 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.100
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|-.|.|+++|........+
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~ 132 (164)
T 6TJD_B 111 YVGSNDGHLYAINPDGTEKWRF 132 (164)
T ss_dssp EEECTTSEEEEECTTSCEEEEE
T ss_pred EEEeCCCeEEEECCCCCEEEEE
No 51
>7MRJ_B Ubiquitin domain-containing protein TINCR; novel ubiquitin-like protein, UNKNOWN FUNCTION; 2.12A {Homo sapiens}
Probab=28.33 E-value=63 Score=19.69 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=0.0 Template_Neff=12.600
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCce-eEEEe
Q FD01543564_041 64 ADYHTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGT-FGKVD 109 (120)
Q Consensus 64 AsyHTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGr-lw~~D 109 (120)
|++|-|++..-.+.++..+.-.+.......+.-.+.++.|. ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (105)
T 7MRJ_B 2 GSSHHHHHHSSGLVPRGSEGLRRGLSRWKRYHIKVHLADEALLLPLT 48 (105)
T ss_dssp ----------------------------CCEEEEEEETTTTEEEEEE
T ss_pred CCCccccccCCCccCCcchHhhhhcCCCceEEEEEEECCCCeEEEEE
No 52
>6R60_A WD-40 repeat protein; Repeat Protein, Fragment Amplification, Protein Evolution, Protein Design, WD40, UNKNOWN FUNCTION; 1.75A {Nostoc punctiforme}
Probab=25.91 E-value=1.9e+02 Score=19.95 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEECCCceeEEEeCCCCEEEEecC
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQKN 120 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~lcg 120 (120)
|+++.+|+|+.+|...+.++.+-+
T Consensus 185 ~~~~~~~~i~~~~~~g~~~~~~~~ 208 (209)
T 6R60_A 185 ASASDDKTVKLWNRNGQLLQTLTG 208 (209)
T ss_dssp EEEETTTEEEEEETTSCEEEEEC-
T ss_pred EEecCCCeEEEEccCCceeeeecc
No 53
>PF21420.1 ; Tautomerase-like ; Tautomerase-like
Probab=25.36 E-value=67 Score=21.06 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=0.0 Template_Neff=2.700
Q ss_pred EECCCceeEEE
Q FD01543564_041 98 LGTPDGTFGKV 108 (120)
Q Consensus 98 vaTPgGrlw~~ 108 (120)
++||-|||..+
T Consensus 33 LGTppgRLRl~ 43 (45)
T A9W9V0_CHLAA/2 33 IGTPPGRLQLI 43 (45)
T ss_pred HCCCCcceEEE
No 54
>6R5Z_F 9-bladed beta-propeller formed by three 3-bladed fragments; Repeat Protein, Fragment Amplification, Protein Evolution, Protein Design, WD40, UNKNOWN FUNCTION; 1.75A {synthetic construct}
Probab=25.26 E-value=2e+02 Score=17.15 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=0.0 Template_Neff=13.800
Q ss_pred EEECCCceeEEEeCCCCEEEEecC
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQKN 120 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~lcg 120 (120)
++++-.|+++.+|..++.+..+++
T Consensus 103 ~~~~~~~~i~~~~~~~~~~~~~~~ 126 (127)
T 6R5Z_F 103 ASASDDKTVKLWNRNGQLLQTLTG 126 (127)
T ss_dssp EEEETTTEEEEEETTSCEEEEEEC
T ss_pred EEEeCCCcEEEEeCCCccceeeec
No 55
>6Y4L_B ER membrane protein complex subunit 9; Complex, insertase, PROTEIN TRANSPORT; HET: SO4, PEG, EDO, PE4; 2.2A {Homo sapiens}
Probab=25.10 E-value=2e+02 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CCceEEEEEecCCCCCCCcccCCCCHHHHH
Q FD01543564_041 58 QNTTNSADYHTHGMEEAGYENNKFSPLDIS 87 (120)
Q Consensus 58 ~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~ 87 (120)
.+..+|+-||.| |.+....||..|..
T Consensus 74 ~~~~ivG~YhSh----p~~~~~~~s~~~~~ 99 (212)
T 6Y4L_B 74 AGLVVAGYYHAN----AAVNDQSPGPLALK 99 (212)
T ss_dssp TTCEEEEEEEEC----SSTTCCSCCHHHHH
T ss_pred cCcEEEEEEEcc----cccCCCCCCHHHHH
No 56
>PF01436.25 ; NHL ; NHL repeat
Probab=25.05 E-value=93 Score=11.65 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=0.0 Template_Neff=14.500
Q ss_pred CEEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 96 GYLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 96 GYvaTPgGrlw~~D~~~~~~~~l 118 (120)
++...+.|.++..+.....+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (28)
T Q9W5T4_DROME/2 6 KIVQGPNGLYAIADTGNNRVLVL 28 (28)
T ss_pred EEEECCCCCEEEEECCCCeEEEC
No 57
>PF21544.1 ; PorZ_N_b_propeller ; TSS9, PorZ, N-terminal beta-propeller domain
Probab=24.94 E-value=2.3e+02 Score=18.38 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=0.0 Template_Neff=12.900
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|.+| |+++|+.+.....+
T Consensus 91 ~~~~~~g-l~~~~~~~~~~~~~ 111 (153)
T E0NPG1_9BACT/4 91 YLSTGFG-IVKINVERAEISDT 111 (153)
T ss_pred EEEeCCe-EEEEECCCceEEEe
No 58
>3HXJ_C Pyrrolo-quinoline quinone; All beta protein. Incomplete 8-blade beta-propeller., Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium; HET: MSE, SO4; 2.0A {Methanococcus maripaludis}
Probab=24.79 E-value=2e+02 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=0.0 Template_Neff=13.000
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|.+|.|+++|+.......+
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~ 290 (330)
T 3HXJ_C 269 YFGSYDGHLYAINPDGTEKWNF 290 (330)
T ss_dssp EEECTTCEEEEECTTSCEEEEE
T ss_pred EEEeCCCeEEEECCCCCEEEEE
No 59
>PF18022.5 ; Lectin_C_term ; Ricin-type beta-trefoil lectin C-terminal domain
Probab=24.65 E-value=1.3e+02 Score=20.73 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EEECCC-ceeEEEeCCCCE
Q FD01543564_041 97 YLGTPD-GTFGKVDISYKT 114 (120)
Q Consensus 97 YvaTPg-Grlw~~D~~~~~ 114 (120)
++-|.. +.+|+++|++++
T Consensus 80 ~~i~~d~~~~~~iEPQt~~ 98 (98)
T A0A0C2WFZ8_9AG 80 WSLNQDLTAVTFFEPQNGL 98 (98)
T ss_pred EEEeCCCCeEEEEcCCCCC
No 60
>6NQ6_B N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase; Hydrolase; 1.5A {Elizabethkingia meningoseptica}
Probab=24.31 E-value=4.4e+02 Score=19.21 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CHHHHHHHHHHHHhh----hchhhCCeeEEEEEEcCCCCEEE
Q FD01543564_041 1 SEEDAALDALKNINN----QSICSGTEYGGLICKDVKNKYFA 38 (120)
Q Consensus 1 ~~~~~A~~~l~~lq~----~Si~~nrEycG~I~~d~~G~~~~ 38 (120)
+..++++.+|..+.. ..-....-..|.|..|.+|++.+
T Consensus 76 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Gvi~v~~~g~~~~ 117 (144)
T 6NQ6_B 76 TPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGA 117 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEEcCCCCEEE
No 61
>1L4Z_B Streptokinase; plasminogen, streptokinase, protein complex, HYDROLASE-BLOOD CLOTTING COMPLEX; 2.8A {Homo sapiens} SCOP: d.15.5.1
Probab=24.09 E-value=2e+02 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred cCCCCCC--CcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCCC
Q FD01543564_041 68 THGMEEA--GYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISYK 113 (120)
Q Consensus 68 THGa~d~--~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~~ 113 (120)
.||.|+. .+..++.+..||+.-+.+.++.=++.-.+++..+|....
T Consensus 48 ~~~~~~~~~~~~~~~LtK~~LL~~Iq~~L~~~~~~n~~~y~VVdF~~d 95 (136)
T 1L4Z_B 48 ASKPFATDSGAMPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASD 95 (136)
T ss_dssp ----------CBCSEEEHHHHHHHHHHHHHSSCCTTCCCEEEEEECTT
T ss_pred CCCCCCCCCCCCCcccCHHHHHHHHHHHHHhccCCCCCceEEEEcCCC
No 62
>2YMS_B OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB; CHAPERONE, PROPELLER STRUCTURE, ASSEMBLED FROM FRAGMENTS, NINE BLADES; 2.101A {ESCHERICHIA COLI}
Probab=24.01 E-value=2.1e+02 Score=15.42 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=0.0 Template_Neff=13.200
Q ss_pred EEECCCceeEEEeCCCCEEE
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVT 116 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~ 116 (120)
|+++..|++..+|..++...
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~ 30 (74)
T 2YMS_B 11 YIGSEKAQVYALNTSDGTVA 30 (74)
T ss_dssp EEECTTSEEEEEETTTCCEE
T ss_pred EEecCCCeEEEEECCCCCEE
No 63
>PF07153.15 ; Marek_SORF3 ; Marek's disease-like virus SORF3 protein
Probab=23.90 E-value=48 Score=28.81 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=0.0 Template_Neff=3.000
Q ss_pred CCCceeEE
Q FD01543564_041 100 TPDGTFGK 107 (120)
Q Consensus 100 TPgGrlw~ 107 (120)
.|+||||+
T Consensus 13 lP~GRFwr 20 (252)
T ORF3_PSHV1/6-2 13 LPGGRFWR 20 (252)
T ss_pred CCCCCCCC
No 64
>PF20067.3 ; SSL_N ; Strictosidine synthase-like, N-terminal
Probab=23.32 E-value=1e+02 Score=16.87 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred EEECCCceeEEE
Q FD01543564_041 97 YLGTPDGTFGKV 108 (120)
Q Consensus 97 YvaTPgGrlw~~ 108 (120)
|.++..|++|++
T Consensus 35 y~~~~~G~i~~~ 46 (46)
T A0A094L487_9GA 35 VFGLKSGDIVRQ 46 (46)
T ss_pred EEeecCCEEEEC
No 65
>PF08734.15 ; GYD ; GYD domain
Probab=22.73 E-value=1.8e+02 Score=19.95 Aligned_cols=29 Identities=10% Similarity=-0.086 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CceEEEEEecCCCCCCCccc--CCCCHHHHHH
Q FD01543564_041 59 NTTNSADYHTHGMEEAGYEN--NKFSPLDISD 88 (120)
Q Consensus 59 ~~~~vAsyHTHGa~d~~yd~--EvpS~~D~~~ 88 (120)
|.+++..|.|.|.||--.-- |.| .+++..
T Consensus 35 gg~~~~~y~~~G~yD~v~i~~~e~p-~~~~~~ 65 (94)
T Q4FMK6_PELUB/4 35 GGKFESFYITRGPYDFVAVTSGDMP-YENFAG 65 (94)
T ss_pred CCEEEEEEEEecCCCEEEEEecCCC-HHHHHH
No 66
>PF16305.9 ; DUF4947 ; Domain of unknown function (DUF4947)
Probab=22.62 E-value=4.1e+02 Score=22.07 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=0.0 Template_Neff=3.900
Q ss_pred HHHHHHHHHHHhhhch----hhCCeeEEEEEEc--------CCCCEEEeCCee
Q FD01543564_041 3 EDAALDALKNINNQSI----CSGTEYGGLICKD--------VKNKYFATTPIS 43 (120)
Q Consensus 3 ~~~A~~~l~~lq~~Si----~~nrEycG~I~~d--------~~G~~~~T~p~~ 43 (120)
.+.|++++..+...|. -+..+|--|+|++ .+|++.+.+|..
T Consensus 110 ~eQarAF~~~a~D~s~a~~~~n~~~y~~~~Yk~~~k~nVy~~~~~l~YiTP~p 162 (167)
T Q8DRZ2_STRMU/5 110 EEQGKAFYAVAVDLAQTTKINNSSHYVLFSYQGGKVQLIFNGDSDLYYMTPNS 162 (167)
T ss_pred HHHHHHHHHHHHHHheeeecCCCCeEEEEEEcCCceEEEEecCCeEEEeccCC
No 67
>1L4D_B STREPTOKINASE; streptokinase, plasminogen, protein complex, HYDROLASE-HYDROLASE ACTIVATOR COMPLEX; HET: SO4; 2.3A {Homo sapiens} SCOP: d.15.5.1
Probab=22.45 E-value=2.3e+02 Score=22.20 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred CCCCCC--CcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCCC
Q FD01543564_041 69 HGMEEA--GYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISYK 113 (120)
Q Consensus 69 HGa~d~--~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~~ 113 (120)
||.|+. .+..++.+..||+.-+.+.++.=++.-.|++..+|....
T Consensus 35 ~~~~~~~~~~~~~~LtK~~LL~~Iq~~L~a~~~~n~~~y~VVdF~~d 81 (122)
T 1L4D_B 35 SKPFATDSGAMPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASD 81 (122)
T ss_dssp ----------EESEEEHHHHHHHHHHHHHHSCCSSSCCEEEEEECTT
T ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHHHHhccCCCCCeeEEEEcCCC
No 68
>PF16149.9 ; DUF4857 ; Domain of unknown function (DUF4857)
Probab=22.39 E-value=1.8e+02 Score=25.16 Aligned_cols=66 Identities=11% Similarity=-0.026 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred EEEEEcCCCCEEEeCCeecCCCeeeccccCCCCCceEEEEEecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCcee
Q FD01543564_041 26 GLICKDVKNKYFATTPISGTNDGLTLSALACPQNTTNSADYHTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTF 105 (120)
Q Consensus 26 G~I~~d~~G~~~~T~p~~G~~~sc~~~~~~~p~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrl 105 (120)
||+-.|++|+|.--.-..|..---....| .+.. .+........-|||.|..|+|
T Consensus 166 GyFl~Da~g~LFhLkmv~g~P~v~~~~~p---~~~~-----------------------~v~E~~~re~~g~iit~~~~~ 219 (264)
T R5I8X6_9BACT/3 166 GYFIVDNSNRLFHLKMIKGEPFCKEIKFN---GTIK-----------------------NIKCHSSGDLFCHIFDDNNQI 219 (264)
T ss_pred cEEEEcCCCCeEEEEEECCEEEEEEcCCC---CCcc-----------------------eeEecCCCcEEEEEEeCCCcE
Q ss_pred EEEeCCCCEEEEe
Q FD01543564_041 106 GKVDISYKTVTYQ 118 (120)
Q Consensus 106 w~~D~~~~~~~~l 118 (120)
|.++.. -+...|
T Consensus 220 yll~~~-y~l~~L 231 (264)
T R5I8X6_9BACT/3 220 YVLTRE-YELHKI 231 (264)
T ss_pred EEEecC-CeEEEC
No 69
>3OT2_A Uncharacterized protein; STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION; HET: EDO, MSE; 1.96A {Anabaena variabilis}
Probab=22.33 E-value=37 Score=24.81 Aligned_cols=40 Identities=15% Similarity=-0.070 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 79 NKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 79 EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~~~~~~l 118 (120)
|+.|..+...|......-|..-.--..|.+|+..+++...
T Consensus 111 Ev~s~~~~~~d~~~K~~~Y~~~gv~~~~~id~~~~~i~~~ 150 (187)
T 3OT2_A 111 EILSPDQSQTKVTKNILHCLKHGTQMGWLIDPDEQTVFVY 150 (187)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTTCSEEEEEETTTTEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHHHhCCcEEEEEccccCEEEEE
No 70
>4X00_B Putative hydrolase; Hydrolase, aryl esterase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID; HET: EDO, GOL; 1.38A {Burkholderia cenocepacia} SCOP: c.69.1.0
Probab=22.26 E-value=1.6e+02 Score=21.05 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=0.0 Template_Neff=13.500
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCCCC
Q FD01543564_041 64 ADYHTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDISYK 113 (120)
Q Consensus 64 AsyHTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~~~ 113 (120)
+++|+|+.+...+ ++.|++|....+.....
T Consensus 2 ~~~~~~~~~~~~~--------------------~~~~~dg~~~~~~~~~~ 31 (283)
T 4X00_B 2 AHHHHHHAAARDY--------------------TVTAPDGVVLAVQEAGD 31 (283)
T ss_dssp ----------CEE--------------------EEECTTSCEEEEEEEEC
T ss_pred CCccccccccccc--------------------EEECCCCCEEEeeeecC
No 71
>PF14781.10 ; BBS2_N ; Ciliary BBSome complex subunit 2, N-terminal
Probab=21.62 E-value=1.4e+02 Score=22.07 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred EECCCceeEEEeCCCC
Q FD01543564_041 98 LGTPDGTFGKVDISYK 113 (120)
Q Consensus 98 vaTPgGrlw~~D~~~~ 113 (120)
.+|++|++|.++|...
T Consensus 14 ~at~~gKv~ih~p~~~ 29 (104)
T B3S5T1_TRIAD/2 14 CATTAGKILVHNPHAR 29 (104)
T ss_pred EEeCCCcEEEECCCcc
No 72
>3LYV_C Ribosome-associated factor Y; ribosomal protein S30Ae family, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, CHAPERONE; HET: MSE; 2.7A {Streptococcus pyogenes}
Probab=21.43 E-value=2e+02 Score=18.92 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CHHHHHHHHHHHHhhhchhhCCeeEEE--EEEcCCCCEEEeCCeec
Q FD01543564_041 1 SEEDAALDALKNINNQSICSGTEYGGL--ICKDVKNKYFATTPISG 44 (120)
Q Consensus 1 ~~~~~A~~~l~~lq~~Si~~nrEycG~--I~~d~~G~~~~T~p~~G 44 (120)
+.++|+.++-..=++-.+-.|.|=... |++..+|.|....|..+
T Consensus 15 s~~EAv~~l~~~~~~f~vF~n~~t~~~~vlyr~~dg~~gli~~~~~ 60 (66)
T 3LYV_C 15 DVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIEAKLE 60 (66)
T ss_dssp CHHHHHHHHHHTTCSEEEEEETTTCCEEEEEECTTSSEEEEEEEC-
T ss_pred cHHHHHHHHHHhCCcEEEEEECCCCcEEEEEECCCCCEEEeecccc
No 73
>6UNC_A Metallophos domain-containing protein; Phosphopantetheinyl Hydrolase, Structural Genomics, PSI-2, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, HYDROLASE; HET: MSE; 2.5A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)}
Probab=21.16 E-value=1.1e+02 Score=24.30 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CceEEEEEecCCCCCC------------CcccC-----CCCHHHHHHHHHhCCCCEEECCCcee
Q FD01543564_041 59 NTTNSADYHTHGMEEA------------GYENN-----KFSPLDISDNYKNYRNGYLGTPDGTF 105 (120)
Q Consensus 59 ~~~~vAsyHTHGa~d~------------~yd~E-----vpS~~D~~~d~~~gidGYvaTPgGrl 105 (120)
+..++.+=|+|..+.. .|..| .++.....-+....-+||+.-|||+|
T Consensus 241 ~v~~~~~GH~H~~~~~~~~g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (313)
T 6UNC_A 241 NAVCSVYGHLHIPRTTWYDGVRFEEVSVGYPREWRRRKPYSWLRQVLPDPQYAPGYLNDFGGHF 304 (313)
T ss_dssp TEEEEEECSSCCCEEEEETTEEEEECBCCCHHHHTTSCCSCSCEEEESCCCC------------
T ss_pred CCeEEEECCCCCCCceEECCEEEEECccCChHHHHhcCCchhhhhhcCCcCCCCCccccCCCcc
No 74
>3J8B_H Eukaryotic translation initiation factor 3 subunit H; TRANSLATION; 9.3A {Homo sapiens}
Probab=21.13 E-value=6.4e+02 Score=22.30 Aligned_cols=52 Identities=4% Similarity=-0.017 Sum_probs=0.0 Template_Neff=7.500
Q ss_pred CCceEEEEEecCCCCCCCcccCCCCHHHHHHHHHhCCCCEEECCCceeEEEeCC---CCEEEEec
Q FD01543564_041 58 QNTTNSADYHTHGMEEAGYENNKFSPLDISDNYKNYRNGYLGTPDGTFGKVDIS---YKTVTYQK 119 (120)
Q Consensus 58 ~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~d~~~gidGYvaTPgGrlw~~D~~---~~~~~~lc 119 (120)
.+..+|+-||+| .+.+. ||..|+..-...... -|.--++.+|+. .+...+.|
T Consensus 112 ~~~~iVGWYHSH-~~g~~-----~S~~Dl~~~~~~q~~----~~~~V~LVvdp~~~~~g~l~lka 166 (343)
T 3J8B_H 112 IDHLHVGWYQST-YYGSF-----VTRALLDSQFSYQHA----IEESVVLIYDPIKTAQGSLSLKA 166 (343)
T ss_dssp CCCEEEEEEECC-CCCSS-----CCSHHHHHHHHHHHH----CTTCEEEEECTTTCBTTBCCEEE
T ss_pred CCCeEEEEEEec-CCCCC-----CCHHHHHHHHHHHhh----cCCCEEEEEcCCcccCCcccEEE
No 75
>6TJF_C Cake6; Beta-propeller, computationally designed, symmetrical, repeat protein, DE NOVO PROTEIN; HET: GOL; 2.4A {synthetic construct}
Probab=21.11 E-value=2.8e+02 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=0.0 Template_Neff=13.400
Q ss_pred EEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 97 YLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 97 YvaTPgGrlw~~D~~~~~~~~l 118 (120)
|++|..|.|+.+|........+
T Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~ 52 (244)
T 6TJF_C 31 YVGSNDGHLYAINPDGTEKWRF 52 (244)
T ss_dssp EEECTTSEEEEECTTSCEEEEE
T ss_pred EEEeCCCeEEEECCCCCEEEEE
No 76
>PF02983.18 ; Pro_Al_protease ; Alpha-lytic protease prodomain
Probab=20.69 E-value=2.4e+02 Score=18.01 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred CCceeEEEeCCCCEEEE
Q FD01543564_041 101 PDGTFGKVDISYKTVTY 117 (120)
Q Consensus 101 PgGrlw~~D~~~~~~~~ 117 (120)
+++.=|++|+.++++..
T Consensus 19 ~~v~~w~vD~~~N~VvV 35 (56)
T K0JT82_SACES/1 19 ASVPGWQTDPAANAVVV 35 (56)
T ss_pred CCCCeEEEeCCCCEEEE
No 77
>8F2B_B Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1; GPCR, amylin receptor, dual amylin and calcitonin receptor agonists, SIGNALING PROTEIN-IMMUNE SYSTEM complex; HET: NAG, Y01, PLM, P42, D6M; 2.0A {Homo sapiens}
Probab=20.60 E-value=32 Score=26.27 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=0.0 Template_Neff=12.700
Q ss_pred ecCCCCCCCcccCCCCHHHHHHHHH----hCCCCEEECCCceeEEEeCCCCEEEEe
Q FD01543564_041 67 HTHGMEEAGYENNKFSPLDISDNYK----NYRNGYLGTPDGTFGKVDISYKTVTYQ 118 (120)
Q Consensus 67 HTHGa~d~~yd~EvpS~~D~~~d~~----~gidGYvaTPgGrlw~~D~~~~~~~~l 118 (120)
|-||.|+..++.--...+++..-.. ......+++.+|.+..+|..+++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 60 (350)
T 8F2B_B 5 HHHGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRT 60 (350)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHTSSSCCCCCCCCCEEEE
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhcCCCcccceeeeeeee
No 78
>3E38_A two-domain protein containing predicted PHP-like metal-dependent phosphoesterase; Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, hydrolase; HET: CAC, MSE, GOL; 2.2A {Bacteroides vulgatus ATCC 8482}
Probab=20.20 E-value=6.9e+02 Score=19.90 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=0.0 Template_Neff=11.500
Q ss_pred cCCCeeeccccCCCCCceEEEEEecCCCCCCCcccCCCCHHHHHHHHHh-CCCCEEEC
Q FD01543564_041 44 GTNDGLTLSALACPQNTTNSADYHTHGMEEAGYENNKFSPLDISDNYKN-YRNGYLGT 100 (120)
Q Consensus 44 G~~~sc~~~~~~~p~~~~~vAsyHTHGa~d~~yd~EvpS~~D~~~d~~~-gidGYvaT 100 (120)
|....-....+..+.....-+.+|+|-.++ +...|++++..-... +++....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~gD~H~Ht~~s----~g~~~~~~~~~~a~~~gld~i~it 54 (343)
T 3E38_A 1 GAQRRNEIQVPDLDGYTTLKCDFHMHSVFS----DGLVWPTVRVDEAYRDGLDAISLT 54 (343)
T ss_dssp -CCCCCCCCCCCCTTCEEEEEECCBCCTTT----TCSBCHHHHHHHHHHTTCSEECCE
T ss_pred CCccCccccCCCCCCCcEEEEEeccCCCcC----CCCCCHHHHHHHHHHcCCCEEEEe