Query FD01845394_01196 RHS repeat family protein
Match_columns 140
No_of_seqs 33 out of 36
Neff 3.73196
Searched_HMMs 86581
Date Mon Feb 26 20:47:37 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7035872.hhr -oa3m ../results/7035872.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14220.10 ; DUF4329 ; Domain 99.8 8.1E-20 9.3E-25 129.3 10.2 126 7-138 2-135 (136)
2 6GZZ_X3 Ribosome hibernation p 86.8 2.1 2.4E-05 27.6 3.5 41 4-44 15-57 (57)
3 3LYV_C Ribosome-associated fac 86.7 2.1 2.4E-05 29.2 3.5 44 4-47 15-60 (66)
4 5LD9_B JAMM1; JAMM/MPN+, metal 85.8 1.7 2E-05 30.7 2.9 78 10-104 18-103 (140)
5 3KA5_B Ribosome-associated pro 84.6 3.2 3.7E-05 28.2 3.7 43 4-46 14-58 (65)
6 6T7O_B Ribosome hibernation pr 81.6 4.1 4.8E-05 27.9 3.3 43 4-46 16-60 (67)
7 1OI0_B HYPOTHETICAL PROTEIN AF 79.3 26 0.0003 24.6 6.8 76 6-104 8-85 (124)
8 PF16321.9 ; Ribosom_S30AE_C ; 75.4 6.2 7.2E-05 25.2 2.6 37 4-40 18-56 (57)
9 2KKS_A Uncharacterized protein 65.6 15 0.00017 26.4 3.0 24 65-104 73-96 (146)
10 PF14464.10 ; Prok-JAB ; Prokar 57.2 25 0.00029 23.6 2.8 27 62-104 67-93 (114)
11 5X8P_y protein plastid pY; Cry 53.5 30 0.00035 28.8 3.2 45 4-48 171-217 (236)
12 6S0X_v Ribosome hibernation pr 53.0 33 0.00038 26.3 3.1 41 4-44 120-162 (162)
13 2ZNR_A AMSH-like protease; met 49.1 42 0.00048 24.7 3.0 27 64-106 80-106 (178)
14 5MYJ_A Ribosome hibernation pr 46.6 51 0.00059 25.9 3.4 42 4-45 142-185 (185)
15 5NGM_Av Ribosome hibernation p 42.4 62 0.00072 25.6 3.3 43 4-46 145-189 (190)
16 3RZU_F STAM-binding protein; U 42.2 56 0.00064 24.6 2.9 25 64-104 89-113 (187)
17 5CW6_A DrBRCC36; metalloprotea 38.5 74 0.00085 25.6 3.2 27 64-106 85-111 (262)
18 2KCQ_A Mov34/MPN/PAD-1 family; 38.5 79 0.00091 23.0 3.1 25 64-104 74-98 (153)
19 8HEK_A AcrIE2; Anti-CRISPR pro 35.2 1.5E+02 0.0017 23.5 4.2 45 3-53 24-73 (92)
20 4PV2_B L-ASPARAGINASE BETA SUB 34.4 1.7E+02 0.002 21.5 4.3 32 4-41 76-107 (131)
21 5JOH_A COP9 signalosome comple 32.8 88 0.001 25.5 2.8 26 65-106 130-155 (257)
22 6FJV_A 26S proteasome regulato 31.1 1.5E+02 0.0017 20.7 3.4 28 64-107 81-108 (155)
23 5CW4_C BRCA1/BRCA2-containing 30.5 1.1E+02 0.0013 24.2 3.0 27 64-106 87-113 (255)
24 5ZEP_x Ribosome hibernation pr 29.9 96 0.0011 25.8 2.6 41 4-44 187-229 (230)
25 3RZV_A STAM-binding protein; U 29.9 1.7E+02 0.0019 23.0 3.8 52 64-131 113-164 (211)
26 2OG4_A Pre-mRNA-splicing facto 29.8 2.8E+02 0.0033 23.7 5.4 73 10-104 44-132 (254)
27 4JXE_B AMSH-like protease sst2 28.5 1.3E+02 0.0015 22.8 3.0 25 64-104 94-118 (197)
28 8DQM_B Isoaspartyl aminopeptid 26.5 3.1E+02 0.0036 20.5 4.6 35 3-41 76-110 (139)
29 5MMM_y Ribosome-binding factor 25.2 1.6E+02 0.0018 26.5 3.3 51 4-54 237-289 (302)
30 PF03665.17 ; UPF0172 ; Unchara 24.7 84 0.00097 23.5 1.3 12 64-75 72-83 (188)
31 5W83_B Ubiquitin carboxyl-term 24.6 1.6E+02 0.0019 22.6 2.9 28 64-107 100-127 (222)
32 7QYM_DDD Beta-aspartyl-peptida 24.3 2.6E+02 0.003 20.9 3.9 35 3-41 76-110 (143)
33 PF05066.17 ; HARE-HTH ; HB1, A 23.8 1.6E+02 0.0019 17.8 2.3 20 4-23 2-22 (69)
34 1ZGX_A Guanyl-specific ribonuc 23.3 1.6E+02 0.0019 20.7 2.4 41 7-49 13-63 (63)
35 PF01398.25 ; JAB ; JAB1/Mov34/ 22.6 78 0.0009 20.1 0.7 9 67-75 82-90 (113)
36 2GEZ_F L-asparaginase beta sub 22.3 4E+02 0.0046 19.8 4.4 32 4-41 76-107 (133)
37 PF09919.13 ; DUF2149 ; Unchara 22.1 1.6E+02 0.0018 22.5 2.3 13 29-41 78-90 (93)
38 6GVW_B Lys-63-specific deubiqu 21.8 1.7E+02 0.002 25.0 2.7 29 62-106 115-143 (295)
39 4O8Y_A 26S proteasome regulato 21.8 1.1E+02 0.0013 22.9 1.5 12 64-75 86-97 (185)
40 7ADO_H ER membrane protein com 21.0 1.1E+02 0.0013 24.8 1.5 12 64-75 85-96 (210)
41 4NQL_A AMSH-like protease sst2 20.7 2.5E+02 0.0029 22.5 3.3 27 64-106 118-144 (221)
42 PF18656.5 ; DUF5633 ; Family o 20.5 4E+02 0.0046 17.2 4.4 38 1-42 2-39 (41)
43 4D10_M COP9 SIGNALOSOME COMPLE 20.5 1.6E+02 0.0018 25.1 2.3 27 64-106 129-155 (334)
44 1APY_D ASPARTYLGLUCOSAMINIDASE 20.0 4.6E+02 0.0053 19.8 4.4 36 3-41 75-110 (141)
No 1
>PF14220.10 ; DUF4329 ; Domain of unknown function (DUF4329)
Probab=99.83 E-value=8.1e-20 Score=129.25 Aligned_cols=126 Identities=18% Similarity=0.128 Sum_probs=92.1 Template_Neff=10.100
Q ss_pred HHHHHHHHHhCcccHhcCceeceEE--EECCCCC--EEeccCCCCCCCcCCCCc--c-ccCCCCCCCceeEeeecCCCCC
Q FD01845394_011 7 DAARSALSKYNPMSIFKNREYGGII--FRAKDGS--YGYTRGRLGTGRTAPTFK--D-SAGGLPKGSTPVGQYHTHGDYS 79 (140)
Q Consensus 7 ~AA~~aL~~iNp~SI~eNrEYGGlI--ykn~dG~--y~yT~P~~Gt~~~v~p~~--~-~~~~~P~g~~~vg~YHTHG~ys 79 (140)
+||+.++..+|.+||++++||||+| ++..+|. |.+|.|..|....+.+.. . .....|.+.. | |||||...
T Consensus 2 dAa~~~~~~~~~~s~~~~~e~~g~i~~~~~~~g~~~~~~t~p~~g~~~~~~~~p~~~~~~~~~p~g~~-~--~hth~~~~ 78 (136)
T B8F9G4_DESAL/1 2 DATIDFEIRYNDDSIRNNVEYSTVVYSFTNENGKKQYVYDYPTIGTENSNPPVPDSIYKDDLDYSMES-L--NETHGADD 78 (136)
T ss_pred cHHHHHHHHhccccHhhCceeEEEEEEEECCCCCEEEEEecCcCCCCCcCCCCCccccCcccCCCCeE-E--EEecCCCC
Confidence 7999999999999999999999999 9999999 999999999888776510 0 0011256654 4 99999932
Q ss_pred CC-CccccCCCCCCCCcccCCHhHhhHHhcccCCCCCCCCcccCCCcceeeeecCCCCcc
Q FD01845394_011 80 DS-GFNRTNKAGDYHNSDQFSSKDIFIHNQANGSYPGYTDALGTPSGGFWKIFGRVSGPD 138 (140)
Q Consensus 80 d~-~g~~~~~~~d~ydsd~FS~~D~~~~~~~~~~~~~~~gYLGTPsG~f~k~y~p~tg~~ 138 (140)
+. ........+.......||+.|+..... .......+||+||.|.+ ++|+|.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~fs~~d~~~~~~--~~~~~~~~Yl~~p~G~l-~~y~~~~~~~ 135 (136)
T B8F9G4_DESAL/1 79 PNYSSNQLSPQDKVYARTLYERSDKKIDLP--SYSGFPNGYLVCFKPSM-EEIDPRTSWL 135 (136)
T ss_pred cccccCCCCHHHHHhhcccCChhhceeecc--cccCCCceEEEeCCCcE-EEEecCCCCC
Confidence 10 011123334455666999999964433 23345679999999999 8899987653
No 2
>6GZZ_X3 Ribosome hibernation promoting factor; Ribosome, hibernation, 100S, dimer, cryo-EM; 4.13A {Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)}
Probab=86.81 E-value=2.1 Score=27.56 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceE--EEECCCCCEEeccC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGI--IFRAKDGSYGYTRG 44 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGl--Iykn~dG~y~yT~P 44 (140)
+.+||+...-..=.+..+..|.+-|.+ |||..||.|.-..|
T Consensus 15 s~~eAi~~l~~~~~~f~~F~~~~t~~~~vlyr~~~g~~~li~~ 57 (57)
T 6GZZ_X3 15 DPEEAAFQMEALGHSFFVFRNAKTDEINVIYRRKDGNYGLIEP 57 (57)
T ss_pred CHHHHHHHHHHhCCcEEEEEeCCCCeEEEEEEcCCCCEEEecC
No 3
>3LYV_C Ribosome-associated factor Y; ribosomal protein S30Ae family, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, CHAPERONE; HET: MSE; 2.7A {Streptococcus pyogenes}
Probab=86.65 E-value=2.1 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceE--EEECCCCCEEeccCCCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGI--IFRAKDGSYGYTRGRLG 47 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGl--Iykn~dG~y~yT~P~~G 47 (140)
|.+||+.+.-..=.+..+..|.+=|-+ |||..||.|....|..+
T Consensus 15 s~~EAv~~l~~~~~~f~vF~n~~t~~~~vlyr~~dg~~gli~~~~~ 60 (66)
T 3LYV_C 15 DVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIEAKLE 60 (66)
T ss_dssp CHHHHHHHHHHTTCSEEEEEETTTCCEEEEEECTTSSEEEEEEEC-
T ss_pred cHHHHHHHHHHhCCcEEEEEECCCCcEEEEEECCCCCEEEeecccc
No 4
>5LD9_B JAMM1; JAMM/MPN+, metalloprotease, isopeptidase, deubiquitination, hydrolase; 1.733A {Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)}
Probab=85.84 E-value=1.7 Score=30.70 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred HHHHHHhCcccHhcCceeceEEEECCCCCEEeccCCCCCCCcCCCCccccCCCCC--------CCceeEeeecCCCCCCC
Q FD01845394_011 10 RSALSKYNPMSIFKNREYGGIIFRAKDGSYGYTRGRLGTGRTAPTFKDSAGGLPK--------GSTPVGQYHTHGDYSDS 81 (140)
Q Consensus 10 ~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~yT~P~~Gt~~~v~p~~~~~~~~P~--------g~~~vg~YHTHG~ysd~ 81 (140)
.+++.++-....+...|-+|++.-...+. ..--|......+...+......+.. +-..||.||+|-...
T Consensus 18 ~~~~~~~~~~~~~~~~E~~G~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~HsHp~~~-- 94 (140)
T 5LD9_B 18 QHYLRAILKVVSSSSVEVCGFLFGKENRV-LKVRFIRNRLNSPVEFEMDPEEMLKALEEAEQENLEVVGIFHSHIACP-- 94 (140)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEETTEE-EEEEEECBTTCCSSCCCBCHHHHHHHHHHHHHTTCEEEEEEEEESSSC--
T ss_pred HHHHHHHHHHHhcCCccEEEEEEEEeCCE-EEEEEeecCCCCCceEEeCHHHHHHHHHHHHHcCccEEEEEECCCCCC--
Q ss_pred CccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 82 GFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 82 ~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
..+|..|+.
T Consensus 95 --------------~~~S~~D~~ 103 (140)
T 5LD9_B 95 --------------PIPSGKDLE 103 (140)
T ss_dssp --------------SSCBHHHHH
T ss_pred --------------CCCCHHHHh
No 5
>3KA5_B Ribosome-associated protein Y (PSrp-1); Ribosome-associated protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, CHAPERONE; HET: MSE; 1.8A {Clostridium acetobutylicum}
Probab=84.57 E-value=3.2 Score=28.22 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceE--EEECCCCCEEeccCCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGI--IFRAKDGSYGYTRGRL 46 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGl--Iykn~dG~y~yT~P~~ 46 (140)
+.+||+++.-..=.+..+.-|.+-|.+ |||..||.|..-.|..
T Consensus 14 s~~eAv~~l~~~~~~f~vF~n~~t~~~~vvyrr~dg~~gli~~~~ 58 (65)
T 3KA5_B 14 SEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLIEPEL 58 (65)
T ss_dssp CHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSSEEEEESSC
T ss_pred CHHHHHHHHHHhCCcEEEEEeCCCCcEEEEEEcCCCCEEEecCCc
No 6
>6T7O_B Ribosome hibernation promotion factor; HPF, Ribosome, Staphylococcus aureus, Hibernating Promoting Factor, RIBOSOMAL PROTEIN; 1.60003624659A {Staphylococcus aureus (strain NCTC 8325)}
Probab=81.56 E-value=4.1 Score=27.88 Aligned_cols=43 Identities=26% Similarity=0.450 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceE--EEECCCCCEEeccCCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGI--IFRAKDGSYGYTRGRL 46 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGl--Iykn~dG~y~yT~P~~ 46 (140)
+.+||+.+.-..=.+..+..|.+-|-+ |||..||.|.-..|..
T Consensus 16 s~~eAi~~l~~~~~~f~~F~n~~t~~~~Vlyr~~dG~~gliep~~ 60 (67)
T 6T7O_B 16 DSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSE 60 (67)
T ss_dssp CHHHHHHHHHHHTCSEEEEEBTTTSSEEEEEECTTSCEEEEECC-
T ss_pred cHHHHHHHhHhhCCcEEEEEECCCCcEEEEEEcCCCCEEEeecCC
No 7
>1OI0_B HYPOTHETICAL PROTEIN AF2198; PROTEASOME, DEUBIQUITINATION, ARCHAEA, HYDROLASE; HET: 144; 1.5A {ARCHAEOGLOBUS FULGIDUS} SCOP: c.97.3.1
Probab=79.34 E-value=26 Score=24.63 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred HHHHHHHHHHhCcccHhcCceeceEEEECCCC--CEEeccCCCCCCCcCCCCccccCCCCCCCceeEeeecCCCCCCCCc
Q FD01845394_011 6 DDAARSALSKYNPMSIFKNREYGGIIFRAKDG--SYGYTRGRLGTGRTAPTFKDSAGGLPKGSTPVGQYHTHGDYSDSGF 83 (140)
Q Consensus 6 d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG--~y~yT~P~~Gt~~~v~p~~~~~~~~P~g~~~vg~YHTHG~ysd~~g 83 (140)
.++....+..+... ...|-+|++.-. +| .-.+..+...... ..-+.. ...+.+...+|.||+|-...
T Consensus 8 ~~~~~~~~~~~~~~---~p~E~~G~l~g~-~~~v~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~g~~HsHp~~~---- 76 (124)
T 1OI0_B 8 RGLLKTILEAAKSA---HPDEFIALLSGS-KDVMDELIFLPFVSGSV-SAVIHL--DMLPIGMKVFGTVHSHPSPS---- 76 (124)
T ss_dssp HHHHHHHHHHHHHH---TTSCCEEEEEEE-TTEEEEEEECCC----------------CCTTCEEEEEEEEESSSC----
T ss_pred HHHHHHHHHHHHHH---CCCcEEEEEEcc-CCeecEEEECCccCCCc-eeeecH--HhccCCceEEEEEEcCCCCC----
Q ss_pred cccCCCCCCCCcccCCHhHhh
Q FD01845394_011 84 NRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 84 ~~~~~~~d~ydsd~FS~~D~~ 104 (140)
..+|..|+.
T Consensus 77 ------------~~~S~~D~~ 85 (124)
T 1OI0_B 77 ------------CRPSEEDLS 85 (124)
T ss_dssp ------------CCCCHHHHH
T ss_pred ------------CCCCHHHHH
No 8
>PF16321.9 ; Ribosom_S30AE_C ; Sigma 54 modulation/S30EA ribosomal protein C terminus
Probab=75.44 E-value=6.2 Score=25.16 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceE--EEECCCCCEE
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGI--IFRAKDGSYG 40 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGl--Iykn~dG~y~ 40 (140)
+.++|....-..=.+..|..|.+-|.+ |||..||.|.
T Consensus 18 s~~eA~~~l~~~~~~f~~F~~~~~~~~~vlyr~~dg~~~ 56 (57)
T Q8RCC0_CALS4/1 18 SPEEAILQMNLLGHTFFVFTNAETDMINVVYKRKDGKYG 56 (57)
T ss_pred CHHHHHHHHHhhCCcEEEEEeCCCCeEEEEEEcCCCccc
No 9
>2KKS_A Uncharacterized protein; NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown function; NMR {Desulfitobacterium hafniense}
Probab=65.63 E-value=15 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 65 GSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 65 g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
+...||.||+|.... ..||..|+.
T Consensus 73 ~~~~vg~~HsHp~~~----------------~~~S~~D~~ 96 (146)
T 2KKS_A 73 GWVMLGNFHSHPATP----------------ARPSAEDKR 96 (146)
T ss_dssp TCEEEEEEEEESSSC----------------SSCCHHHHT
T ss_pred CCeEEEEEEcCCCCC----------------CCCCHHHHH
No 10
>PF14464.10 ; Prok-JAB ; Prokaryotic homologs of the JAB domain
Probab=57.21 E-value=25 Score=23.58 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCCCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 62 LPKGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 62 ~P~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
...+...+|.||+|-... ..||..|+.
T Consensus 67 ~~~~~~~ig~~HsHp~~~----------------~~~S~~D~~ 93 (114)
T Q9RXB3_DEIRA/6 67 QREGLDLVALYHSHPHGP----------------AAPSASDRR 93 (114)
T ss_pred hhCCceEEEEEeCCCCCC----------------CCCCHHHHH
No 11
>5X8P_y protein plastid pY; Cryo-EM, ribosome, chloroplast ribosome; 3.4A {Spinacia oleracea}
Probab=53.45 E-value=30 Score=28.79 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred cHHHHHHHHHHHhCcccHhcCceece--EEEECCCCCEEeccCCCCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGG--IIFRAKDGSYGYTRGRLGT 48 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGG--lIykn~dG~y~yT~P~~Gt 48 (140)
|.+||+...-..=.+--++-|.+-|- +|||..||.|....|..|.
T Consensus 171 s~~EAi~~l~~~~~~f~vF~n~~t~~~~vlyrr~dg~~gli~~~~~~ 217 (236)
T 5X8P_y 171 TITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPKDGK 217 (236)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCCCCcEEEEEEccCCCEEEEEcCCCc
No 12
>6S0X_v Ribosome hibernation promoting factor; Ribosome, antibiotics, resistance, Staphylococcus aureus, exit tunnel, RNA, rProteins, erythromycin; HET: ERY; 2.425A {Staphylococcus aureus}
Probab=52.97 E-value=33 Score=26.30 Aligned_cols=41 Identities=29% Similarity=0.533 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred cHHHHHHHHHHHhCcccHhcCceece--EEEECCCCCEEeccC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGG--IIFRAKDGSYGYTRG 44 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGG--lIykn~dG~y~yT~P 44 (140)
|.+||++..-..=.+.-+..|.|=|. +|||..||.|+.-.|
T Consensus 120 s~~eA~~~~~~~~~~f~~F~~~~t~~~~vvyrr~dg~~gli~p 162 (162)
T 6S0X_v 120 DSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQT 162 (162)
T ss_pred CHHHHHHHHHHcCCcEEEEEECCCCcEEEEEEcCCCCeeeeeC
No 13
>2ZNR_A AMSH-like protease; metal binding protein, Alternative splicing, Hydrolase, Metal-binding, Metalloprotease, Protease, Ubl conjugation pathway, Zinc; HET: EDO; 1.2A {Homo sapiens} SCOP: c.97.3.1, l.1.1.1
Probab=49.11 E-value=42 Score=24.71 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
.+...+|.||+|-... ..||..|+...
T Consensus 80 ~~~~~vg~~HsHp~~~----------------~~~S~~D~~~~ 106 (178)
T 2ZNR_A 80 HDLLTLGWIHTHPTQT----------------AFLSSVDLHTH 106 (178)
T ss_dssp HTCEEEEEEEECSSSC----------------SCCCHHHHHHH
T ss_pred CCcEEEEEEEcCCCCC----------------cccChHHHHhH
No 14
>5MYJ_A Ribosome hibernation promotion factor; ribosome, 70S, lactoccocus lactis, Cryo-EM; 5.6A {Lactococcus lactis subsp. cremoris MG1363}
Probab=46.63 E-value=51 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred cHHHHHHHHHHHhCcccHhcCceec--eEEEECCCCCEEeccCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYG--GIIFRAKDGSYGYTRGR 45 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYG--GlIykn~dG~y~yT~P~ 45 (140)
|.+||+.+.-..=.+.-++-|.|-| =+|||..||.|....|.
T Consensus 142 s~~eA~~~m~~~~~~f~~F~n~~t~~~~v~yr~~dg~~~lie~~ 185 (185)
T 5MYJ_A 142 DAEEAVLQMDMLGHDFYVFTDADSNGTHVVYRRTDGRYGLIETE 185 (185)
T ss_pred CHHHHHHHHHhhCCeEEEEEeCCCCcEEEEEECCCCCeeeeecC
No 15
>5NGM_Av Ribosome hibernation promoting factor; Ribosome Cryo-EM Structural Biology Hibernation, Ribosome; HET: MG; 2.9A {Staphylococcus aureus}
Probab=42.36 E-value=62 Score=25.56 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred cHHHHHHHHHHHhCcccHhcCceece--EEEECCCCCEEeccCCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGG--IIFRAKDGSYGYTRGRL 46 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGG--lIykn~dG~y~yT~P~~ 46 (140)
|.+||+...-..=.+--++-|.|-|- +|||..||.|+.-.|..
T Consensus 145 s~~eA~~~m~~~~~~f~~F~n~~t~~~~vlyrr~dg~~~li~~~~ 189 (190)
T 5NGM_Av 145 DSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSE 189 (190)
T ss_pred CHHHHHHHHHHhCCcEEEEEeCCCCcEEEEEEccCCCeEeEEecC
No 16
>3RZU_F STAM-binding protein; Ubiquitin Hydrolase, STAM, Endosome-associated deubiquitinating enzyme, HYDROLASE; HET: ZN; 2.5A {Homo sapiens} SCOP: c.97.3.1
Probab=42.15 E-value=56 Score=24.61 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
.+-..||.||+|-... ..+|..|+.
T Consensus 89 ~~~~~vG~~hsHp~~~----------------~~~S~~D~~ 113 (187)
T 3RZU_F 89 QGLITLGWIHTHPTQT----------------AFLSSVDLH 113 (187)
T ss_dssp TTCEEEEEEEECSSSC----------------SCCCHHHHH
T ss_pred cCCEEEEEEEeCCCCC----------------cccCHHHHH
No 17
>5CW6_A DrBRCC36; metalloprotease, METAL BINDING PROTEIN; 3.193A {Danio rerio}
Probab=38.48 E-value=74 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
.+...||.||+|-... -.+|..|+...
T Consensus 85 ~~~~ivGwyhShp~~~----------------~~~S~~D~~~~ 111 (262)
T 5CW6_A 85 RPMRVVGWYHSHPHIT----------------VWPSHVDVRTQ 111 (262)
T ss_dssp SCCEEEEEEEECSSSC----------------SSCCHHHHHHH
T ss_pred CCcEEEEEeeCCCCCC----------------CCCCHHHHHHH
No 18
>2KCQ_A Mov34/MPN/PAD-1 family; NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, unknown function, NUCLEOTIDE-BINDING PROTEIN; NMR {Salinibacter ruber DSM 13855} SCOP: c.97.3.1, l.1.1.1
Probab=38.48 E-value=79 Score=22.99 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
.+...+|.||+|-... ..+|..|+.
T Consensus 74 ~~~~~iG~~HsHp~~~----------------~~~S~~D~~ 98 (153)
T 2KCQ_A 74 QGLDVVGVYHSHPDHP----------------ARPSATDLE 98 (153)
T ss_dssp HTCEEEEEEEECSSSS----------------SSCCHHHHH
T ss_pred cCCeEEEEEECCCCCC----------------CCCCHHHHH
No 19
>8HEK_A AcrIE2; Anti-CRISPR protein, VIRAL PROTEIN; 1.23A {Pseudomonas phage JBD88a}
Probab=35.22 E-value=1.5e+02 Score=23.52 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=0.0 Template_Neff=2.200
Q ss_pred CcHHHHHHHHHHHhCcccHhcCceeceEEEECC-----CCCEEeccCCCCCCCcCC
Q FD01845394_011 3 SSADDAARSALSKYNPMSIFKNREYGGIIFRAK-----DGSYGYTRGRLGTGRTAP 53 (140)
Q Consensus 3 ~t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~-----dG~y~yT~P~~Gt~~~v~ 53 (140)
.+.++||..|-.+|++ +++=|+|+|-. .|-|..=.+.+|+..+.+
T Consensus 24 ~s~~~AA~~Aa~ki~g------~~~~glv~r~tG~~~GSGMFQay~~l~G~~~t~~ 73 (92)
T 8HEK_A 24 VDITAAAKSAAQQILG------EEFEGLVYRETGESNGSGMFQAYHHLHGTNRTET 73 (92)
T ss_dssp SSHHHHHHHHHHHHHC------TTCCCEEEESSSCTTSSEEEEEEEECTTSSSCEE
T ss_pred ccHHHHHHHHHHHHhC------hheeeeEEeccCCCCccceeEEEEEecCCCCccc
No 20
>4PV2_B L-ASPARAGINASE BETA SUBUNIT; metal binding sites, potassium coordination, K-dependent enzyme, Ntn-hydrolase, plant protein, L-asparaginase, isoaspartyl aminopeptidase, amidohydrolase, HYDROLASE; HET: NO3; 1.79A {Phaseolus vulgaris}
Probab=34.36 E-value=1.7e+02 Score=21.51 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceEEEECCCCCEEe
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGIIFRAKDGSYGY 41 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~y 41 (140)
+.++|++.+|.+..+ ...+|.|..+++|.+..
T Consensus 76 ~~~~a~~~~~~~~~~------~~~~G~i~i~~~G~~~~ 107 (131)
T 4PV2_B 76 KLHQAVDFVIKHRLD------EGKAGLIAVSNTGEVAC 107 (131)
T ss_dssp CHHHHHHHHHHHSCS------SCCEEEEEEETTSCEEE
T ss_pred CHHHHHHHHHHHhcc------CCceEEEEEcCCCCEEE
No 21
>5JOH_A COP9 signalosome complex subunit 5; COP9 signalosome, metal protease, inhibitor, HYDROXYLASE; HET: 6M3; 1.99A {Homo sapiens}
Probab=32.82 E-value=88 Score=25.47 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 65 GSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 65 g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
+...||.||+|-... ..+|..|+...
T Consensus 130 ~~~ivGwyhSHp~~~----------------~~~S~~D~~~~ 155 (257)
T 5JOH_A 130 LENAIGWYHSHPGYG----------------CWLSGIDVSTQ 155 (257)
T ss_dssp CCEEEEEEEECTTTC----------------SSCCHHHHHHH
T ss_pred ccceeEEeecCCCCC----------------CcCChHHHHHH
No 22
>6FJV_A 26S proteasome regulatory subunit N11-like protein; deubiquitination, deubiquitylation, HYDROLASE; HET: SO4; 1.35A {Candidatus Caldiarchaeum subterraneum}
Probab=31.08 E-value=1.5e+02 Score=20.67 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=0.0 Template_Neff=11.800
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHHh
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIHN 107 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~~ 107 (140)
.+...+|.||+|=... ..+|..|+....
T Consensus 81 ~~~~~ig~~hshp~~~----------------~~~s~~d~~~~~ 108 (155)
T 6FJV_A 81 KNLYIVGWYHSHPGLD----------------VFLSPTDIDTQK 108 (155)
T ss_dssp TTCEEEEEEEECTTSC----------------SCCCHHHHHHHH
T ss_pred CCCEEEEEEECCCCCC----------------CCCCHHHHHHHH
No 23
>5CW4_C BRCA1/BRCA2-containing complex subunit 3; Metal dependent enzyme, METAL BINDING PROTEIN; HET: GOL, MSE; 2.543A {Camponotus floridanus}
Probab=30.48 E-value=1.1e+02 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
.+...||.||+|-... ..+|..|+...
T Consensus 87 ~~~~ivG~yhshp~~~----------------~~~S~~d~~~~ 113 (255)
T 5CW4_C 87 RPMRVLGWYHSHPHIT----------------VCPSHVDVRTQ 113 (255)
T ss_dssp SCCEEEEEEEEEETSC----------------SSCCHHHHHHH
T ss_pred CCcEEEEeecCCCCCC----------------CCCChHHHHHH
No 24
>5ZEP_x Ribosome hibernation promoting factor; hibernating-state, ribosome, complex; 3.4A {Mycobacterium smegmatis str. MC2 155}
Probab=29.87 E-value=96 Score=25.83 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceE--EEECCCCCEEeccC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGI--IFRAKDGSYGYTRG 44 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGl--Iykn~dG~y~yT~P 44 (140)
|.+||+++.-..=.+.=++-|.|=|-+ |||..||.|+.-.|
T Consensus 187 s~eEAi~~l~~~~~~f~vF~n~~t~~~~vlyrr~dg~yglie~ 229 (230)
T 5ZEP_x 187 TVDDALYEMELVGHDFFLFHDKETDRPSVVYRRHAFDYGLIRL 229 (230)
T ss_dssp -------------------------------------------
T ss_pred CHHHHHHHHHHhCCcEEEEEeCCCCCeEEEEEeCCCceeeEEe
No 25
>3RZV_A STAM-binding protein; Ubiquitin Hydrolase, STAM, Endosome-associated deubiquitinating enzyme, HYDROLASE; 1.67A {Homo sapiens} SCOP: c.97.3.1
Probab=29.85 E-value=1.7e+02 Score=22.98 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHHhcccCCCCCCCCcccCCCcceeeee
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIHNQANGSYPGYTDALGTPSGGFWKIF 131 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~~~~~~~~~~~~gYLGTPsG~f~k~y 131 (140)
.+-..||.||+|-... ..+|..|+..........+..-..+-.|...-++.|
T Consensus 113 ~~~~~vG~~hsHp~~~----------------~~~S~~D~~~~~~~~~~~~~~v~~ii~~~~~~~~~~ 164 (211)
T 3RZV_A 113 QGLITLGWIHTHPTQT----------------AFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFF 164 (211)
T ss_dssp HTCEEEEEEEECTTSC----------------SCCCHHHHHHHHHHHHHCTTCEEEEEETTTTEEEEE
T ss_pred cCCEEEEEEEcCCCCC----------------cccCHHHHHHHHHHHhhCCCeEEEEEcCCCCceEEE
No 26
>2OG4_A Pre-mRNA-splicing factor 8; isopeptidase, Jab1/MPN domain, pre-mRNA splicing, protein-protein interaction, Prp8p, pseudoenzyme, spliceosome activation, U5-200K protein, PROTEIN BINDING; 2.0A {Saccharomyces cerevisiae} SCOP: c.97.3.0
Probab=29.76 E-value=2.8e+02 Score=23.74 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred HHHHHHhCcccHhcCceeceEEEECCCCC----EEec----cCCCCCCCcCCCCccccCCCCC--------CCceeEeee
Q FD01845394_011 10 RSALSKYNPMSIFKNREYGGIIFRAKDGS----YGYT----RGRLGTGRTAPTFKDSAGGLPK--------GSTPVGQYH 73 (140)
Q Consensus 10 ~~aL~~iNp~SI~eNrEYGGlIykn~dG~----y~yT----~P~~Gt~~~v~p~~~~~~~~P~--------g~~~vg~YH 73 (140)
+++|+++-..+-.. .|.+|.++-..... +..+ .|..|+...+.... +|. +-..+|-+|
T Consensus 44 ~nll~~fi~iad~~-~E~~G~L~G~~~~d~~~v~eI~~i~~~pQ~g~~~~v~~~~-----l~~~~~~~~~~~l~~lGwiH 117 (254)
T 2OG4_A 44 KNLLKKFIEISDVK-IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISN-----IPDIGDLPDTEGLELLGWIH 117 (254)
T ss_dssp HHHHHHHHHTSCSS-SCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECC-----CCCCTTSTTCTTCEEEEEEE
T ss_pred HHHHHHHHHHhccc-ceeeEEeeEEecCCCCceEEEEEEEeCCCccccceEEEec-----CCCcCCCcccCCCeeceeee
Q ss_pred cCCCCCCCCccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 74 THGDYSDSGFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 74 THG~ysd~~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
||.... ...|+.|+.
T Consensus 118 thp~~~----------------~~lS~~Dv~ 132 (254)
T 2OG4_A 118 TQTEEL----------------KFMAASEVA 132 (254)
T ss_dssp EESSCC----------------SSCCHHHHH
T ss_pred cCCCCC----------------CCCCHHHHH
No 27
>4JXE_B AMSH-like protease sst2; Helix-beta-helix sandwich, ubiquitin, dequbiquitination, Zinc metalloprotease, deubiquitination, cytosol, hydrolase; HET: EDO, TRS; 1.451A {Schizosaccharomyces pombe}
Probab=28.54 E-value=1.3e+02 Score=22.79 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhh
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIF 104 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~ 104 (140)
.+-..+|.||+|-... ..+|..|+.
T Consensus 94 ~~~~~vG~~hshp~~~----------------~~~S~~D~~ 118 (197)
T 4JXE_B 94 HNLLTLGWIHTHPTQT----------------CFMSSVDLH 118 (197)
T ss_dssp TTCEEEEEEEECSSSC----------------SCCCHHHHH
T ss_pred CCCEEEEEEEcCCCCC----------------CCCChHHHH
No 28
>8DQM_B Isoaspartyl aminopeptidase; IaaA, HYDROLASE; 2.7A {Roseivivax halodurans}
Probab=26.54 E-value=3.1e+02 Score=20.45 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CcHHHHHHHHHHHhCcccHhcCceeceEEEECCCCCEEe
Q FD01845394_011 3 SSADDAARSALSKYNPMSIFKNREYGGIIFRAKDGSYGY 41 (140)
Q Consensus 3 ~t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~y 41 (140)
.+.++|++++|... ......++|+|..+.+|.+.+
T Consensus 76 ~~~~~a~~~~l~~~----~~~~~~~~gvi~v~~~g~~~~ 110 (139)
T 8DQM_B 76 ESLRSAAEAVIGSD----LEAIGGSGGLIAIDRDGAIVT 110 (139)
T ss_dssp CCHHHHHHHCCCCC----HHHTTCCEEEEEEETTCCEEC
T ss_pred CCHHHHHHHHHHHH----HHHhCCCEEEEEEcCCCCEEE
No 29
>5MMM_y Ribosome-binding factor PSRP1, chloroplastic; chloroplast, translation, ribosome, cryo-EM; HET: MG; 3.4A {Spinacia oleracea}
Probab=25.22 E-value=1.6e+02 Score=26.51 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred cHHHHHHHHHHHhCcccHhcCceece--EEEECCCCCEEeccCCCCCCCcCCC
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGG--IIFRAKDGSYGYTRGRLGTGRTAPT 54 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGG--lIykn~dG~y~yT~P~~Gt~~~v~p 54 (140)
|.+||+...-..=-+.-++-|.|-|- +|||.+||.|+.-.|..|...-..|
T Consensus 237 tveEAi~~Le~~~~~F~vF~n~etg~inVlYrR~dG~ygLI~p~~~~~~~~~~ 289 (302)
T 5MMM_y 237 TITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPKDGKTEKLES 289 (302)
T ss_pred CHHHHHHHHHcCCCcEEEEEECCCCCEEEEEEcCCCcEEEEecCCCCcccccc
No 30
>PF03665.17 ; UPF0172 ; Uncharacterised protein family (UPF0172)
Probab=24.69 E-value=84 Score=23.54 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CCCceeEeeecC
Q FD01845394_011 64 KGSTPVGQYHTH 75 (140)
Q Consensus 64 ~g~~~vg~YHTH 75 (140)
.+-..||.||+|
T Consensus 72 ~~~~ivG~~hsh 83 (188)
T A7RMN9_NEMVE/2 72 LGHHIIGYYQAN 83 (188)
T ss_pred hCcEEEEEEEcc
No 31
>5W83_B Ubiquitin carboxyl-terminal hydrolase RPN11; Protease, HYDROLASE; 1.554A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} SCOP: c.97.3.1
Probab=24.62 E-value=1.6e+02 Score=22.55 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHHh
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIHN 107 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~~ 107 (140)
.+...||.||+|-... ..+|..|+....
T Consensus 100 ~~~~~vGwyhshp~~~----------------~~~s~~d~~~~~ 127 (222)
T 5W83_B 100 RDQMVVGWYHSHPGFG----------------CWLSSVDVNTQK 127 (222)
T ss_dssp CCCEEEEEEEECTTTC----------------SCCCHHHHHHHH
T ss_pred CCccEEEeccCCCCCc----------------ccCCHHHHHHHH
No 32
>7QYM_DDD Beta-aspartyl-peptidase; L-asparaginase, mutation, HYDROLASE; 1.2A {Escherichia coli}
Probab=24.25 E-value=2.6e+02 Score=20.95 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred CcHHHHHHHHHHHhCcccHhcCceeceEEEECCCCCEEe
Q FD01845394_011 3 SSADDAARSALSKYNPMSIFKNREYGGIIFRAKDGSYGY 41 (140)
Q Consensus 3 ~t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~y 41 (140)
.+..+|++++|....... ...+|+|..+++|.+.+
T Consensus 76 ~~~~~a~~~~l~~~~~~~----~~~~G~i~~~~~g~~~~ 110 (143)
T 7QYM_DDD 76 LSLAEACERVVMEKLPAL----GGSGGLIAIDHEGNVAL 110 (143)
T ss_pred CCHHHHHHHHHHHHHHHh----CCcEEEEEEcCCCCEEE
No 33
>PF05066.17 ; HARE-HTH ; HB1, ASXL, restriction endonuclease HTH domain
Probab=23.84 E-value=1.6e+02 Score=17.82 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred cHHHHHHHHHHHh-CcccHhc
Q FD01845394_011 4 SADDAARSALSKY-NPMSIFK 23 (140)
Q Consensus 4 t~d~AA~~aL~~i-Np~SI~e 23 (140)
|.-+||.++|++. .|+++.+
T Consensus 2 t~~~~~~~iL~~~~~~~~~~e 22 (69)
T F2IGS0_FLUTR/1 2 TLHEAIEQVLIEKKRKLTAKE 22 (69)
T ss_pred CHHHHHHHHHHHcCCCcCHHH
No 34
>1ZGX_A Guanyl-specific ribonuclease Sa; mutant, HYDROLASE; HET: SO4; 1.13A {Streptomyces aureofaciens}
Probab=23.28 E-value=1.6e+02 Score=20.65 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred HHHHHHHHHh---------CcccHhcCceeceEEEECCCCCE-EeccCCCCCC
Q FD01845394_011 7 DAARSALSKY---------NPMSIFKNREYGGIIFRAKDGSY-GYTRGRLGTG 49 (140)
Q Consensus 7 ~AA~~aL~~i---------Np~SI~eNrEYGGlIykn~dG~y-~yT~P~~Gt~ 49 (140)
..|+++|+.| +.-++++|+| |++=+.+.|.| .||.+..|..
T Consensus 13 ~~a~~tl~~i~~gg~~p~~~dG~~F~N~e--g~LP~~~~gyYrEy~V~tpG~~ 63 (63)
T 1ZGX_A 13 PEATDTLNLIASDGPFPYSQDGVVFQNRE--SVLPTQSYGYYHEYTVITPGAR 63 (63)
T ss_dssp HHHHHHHHHHHHTCCCSSTTTTCBCCCTT--CCSCCCCTTSCEEEECCCTTCC
T ss_pred HHHHHHHHHHHhhCCCCCCCCCceecCCC--ccCCCCCCCceEEccCCCCCCC
No 35
>PF01398.25 ; JAB ; JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Probab=22.64 E-value=78 Score=20.14 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=0.0 Template_Neff=12.400
Q ss_pred ceeEeeecC
Q FD01845394_011 67 TPVGQYHTH 75 (140)
Q Consensus 67 ~~vg~YHTH 75 (140)
..+|.||+|
T Consensus 82 ~~~g~~hsh 90 (113)
T EIF3H_HUMAN/34 82 LHVGWYQST 90 (113)
T ss_pred ccceEEEce
No 36
>2GEZ_F L-asparaginase beta subunit; isoaspartyl aminopeptidase, L-asparaginase, Ntn-hydrolase, autoproteolysis, taspase, sodium binding, HYDROLASE; 2.6A {Lupinus luteus}
Probab=22.29 E-value=4e+02 Score=19.81 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred cHHHHHHHHHHHhCcccHhcCceeceEEEECCCCCEEe
Q FD01845394_011 4 SADDAARSALSKYNPMSIFKNREYGGIIFRAKDGSYGY 41 (140)
Q Consensus 4 t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~y 41 (140)
+.++|++.+|+..-+ .-++|+|..+++|.+.+
T Consensus 76 ~~~~a~~~~~~~~~~------~~~~G~i~v~~~g~~~~ 107 (133)
T 2GEZ_F 76 SLKEAADFVIHERTP------KGTVGLIAVSAAGEIAM 107 (133)
T ss_dssp CHHHHHHHHHHHSSC------TTSEEEEEEETTSCEEC
T ss_pred CHHHHHHHHHHHhCC------CCcEEEEEEcCCCCEEE
No 37
>PF09919.13 ; DUF2149 ; Uncharacterized conserved protein (DUF2149)
Probab=22.13 E-value=1.6e+02 Score=22.54 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred eEEEECCCCCEEe
Q FD01845394_011 29 GIIFRAKDGSYGY 41 (140)
Q Consensus 29 GlIykn~dG~y~y 41 (140)
|.+||.++|++.|
T Consensus 78 GtaYrl~~G~~iy 90 (93)
T Q5LCB9_BACFN/1 78 GVAYELENGKIIY 90 (93)
T ss_pred EEEEEcCCCCEEE
No 38
>6GVW_B Lys-63-specific deubiquitinase BRCC36; Deubiquitinase complex, DUB, Lysine-63 linkage specific, BRCC36-containing, BRCA1A binding, SIGNALING PROTEIN; 3.75A {Mus musculus}
Probab=21.82 E-value=1.7e+02 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CCCCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 62 LPKGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 62 ~P~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
+..+...||.||+|-... ..+|..|+...
T Consensus 115 ~~~~~~vvGwyhShp~~~----------------~~pS~~D~~~~ 143 (295)
T 6GVW_B 115 TGRPMRVVGWYHSHPHIT----------------VWPSHVDVRTQ 143 (295)
T ss_dssp HCCCCEEEEEEEEETTSC----------------SSCCHHHHHHH
T ss_pred hCCCceEEEeecCCCCce----------------ecCCHHHHHHH
No 39
>4O8Y_A 26S proteasome regulatory subunit RPN8; MPN JAMM, deubiquitinase, HYDROLASE; HET: EDO; 1.95A {Saccharomyces cerevisiae} SCOP: c.97.3.1, l.1.1.1
Probab=21.77 E-value=1.1e+02 Score=22.90 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCCceeEeeecC
Q FD01845394_011 64 KGSTPVGQYHTH 75 (140)
Q Consensus 64 ~g~~~vg~YHTH 75 (140)
++...||.||+|
T Consensus 86 ~~~~ivG~yhs~ 97 (185)
T 4O8Y_A 86 AKEKLIGWYHSG 97 (185)
T ss_dssp TTSEEEEEEECC
T ss_pred CCCCeeEEEEcC
No 40
>7ADO_H ER membrane protein complex subunit 8; ER membrane protein, EMC, Membrane protein biogenesis, MEMBRANE PROTEIN; HET: NAG, PCW; 3.39A {Homo sapiens}
Probab=20.98 E-value=1.1e+02 Score=24.83 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCCceeEeeecC
Q FD01845394_011 64 KGSTPVGQYHTH 75 (140)
Q Consensus 64 ~g~~~vg~YHTH 75 (140)
.+...||.||.|
T Consensus 85 ~~~~IvG~Yhsh 96 (210)
T 7ADO_H 85 HSYVIAGYYQAN 96 (210)
T ss_dssp GTCEEEEEEEEC
T ss_pred CCceEEEEEEcC
No 41
>4NQL_A AMSH-like protease sst2; JAMM domain, Zinc metalloprotease, protein complex, AMSH, heix-beta-helix sandwich, hydrolase, metal binding, K63-linked diubiquitin, Helix-beta-helix sandwich; HET: EDO; 2.3A {Schizosaccharomyces pombe}
Probab=20.69 E-value=2.5e+02 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
.+...||.||+|-... ..+|..|+...
T Consensus 118 ~~~~~vG~~HsHp~~~----------------~~~S~~D~~~~ 144 (221)
T 4NQL_A 118 HNLLTLGWIHTHPTQT----------------CFMSSVALHTH 144 (221)
T ss_dssp HTCEEEEEEEECSSSC----------------SCCCHHHHHHH
T ss_pred CCCeEEEEEEcCCCCC----------------CCCCHHHHHHH
No 42
>PF18656.5 ; DUF5633 ; Family of unknown function (DUF5633)
Probab=20.54 E-value=4e+02 Score=17.23 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=0.0 Template_Neff=6.200
Q ss_pred CCCcHHHHHHHHHHHhCcccHhcCceeceEEEECCCCCEEec
Q FD01845394_011 1 GFSSADDAARSALSKYNPMSIFKNREYGGIIFRAKDGSYGYT 42 (140)
Q Consensus 1 ~F~t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~yT 42 (140)
.|.+..+|..+|.+.+=-.-| |..| -|.+..||+|.|.
T Consensus 2 ~~~t~eea~~aa~~al~~~~~--n~~y--~i~~~~dg~~~~~ 39 (41)
T B0S4H6_FINM2/3 2 GYATYEEAEAAAKKALENDKI--NNSY--SISQGADGRYYYV 39 (41)
T ss_pred CccCHHHHHHHHHHHHHcCcc--cCce--eEEECCCCCeEEE
No 43
>4D10_M COP9 SIGNALOSOME COMPLEX SUBUNIT 5; SIGNALING PROTEIN; 3.8A {HOMO SAPIENS}
Probab=20.52 E-value=1.6e+02 Score=25.05 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CCCceeEeeecCCCCCCCCccccCCCCCCCCcccCCHhHhhHH
Q FD01845394_011 64 KGSTPVGQYHTHGDYSDSGFNRTNKAGDYHNSDQFSSKDIFIH 106 (140)
Q Consensus 64 ~g~~~vg~YHTHG~ysd~~g~~~~~~~d~ydsd~FS~~D~~~~ 106 (140)
.+...||.||||-... ..+|..|+...
T Consensus 129 ~~~~ivGwyhshp~~~----------------~~~s~~D~~~~ 155 (334)
T 4D10_M 129 RLENAIGWYHSHPGYG----------------CWLSGIDVSTQ 155 (334)
T ss_dssp CCCEEEEEEEECTTTC----------------SCCCHHHHHHH
T ss_pred CCccEEEEEEeCCCCC----------------cccccccHHHH
No 44
>1APY_D ASPARTYLGLUCOSAMINIDASE; ASPARTYLGLUCOSAMINIDASE, GLYCOSYLASPARAGINASE, HYDROLASE; HET: NAG, BMA; 2.0A {Homo sapiens}
Probab=20.02 E-value=4.6e+02 Score=19.84 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CcHHHHHHHHHHHhCcccHhcCceeceEEEECCCCCEEe
Q FD01845394_011 3 SSADDAARSALSKYNPMSIFKNREYGGIIFRAKDGSYGY 41 (140)
Q Consensus 3 ~t~d~AA~~aL~~iNp~SI~eNrEYGGlIykn~dG~y~y 41 (140)
.+.++|++.+|+. +.-+.....||+|-.+++|.+..
T Consensus 75 ~~~~~a~~~~l~~---~~~~~~~~~~Gii~v~~~g~~~~ 110 (141)
T 1APY_D 75 EDPTIACQKVISR---IQKHFPEFFGAVICANVTGSYGA 110 (141)
T ss_dssp CCHHHHHHHHHHH---HHTTCTTCCEEEEEEETTSCEEE
T ss_pred CCHHHHHHHHHHH---HHHHCCCCeEEEEEEeCCCCEEE