Query FD01542852_04990 type IV secretion protein Rhs
Match_columns 107
No_of_seqs 89 out of 94
Neff 4.6996
Searched_HMMs 86581
Date Mon Feb 26 22:31:42 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/1718960.hhr -oa3m ../results/1718960.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7ZHL_A RHS repeat protein; bac 100.0 1.2E-30 1.4E-35 175.8 11.3 106 2-107 2-107 (116)
2 7RT7_K RhsP2; Type Six Secreti 62.5 33 0.00038 25.2 4.4 52 1-59 23-74 (155)
3 PF15633.10 ; Tox-ART-HYD1 ; HY 60.3 47 0.00054 21.7 4.4 68 12-80 6-95 (101)
4 PF12952.11 ; DUF3841 ; Domain 49.1 25 0.00029 27.1 2.0 27 49-75 75-102 (182)
5 PF19416.3 ; Astro_VPg ; Astrov 38.4 46 0.00053 24.3 1.8 17 8-24 31-47 (95)
6 PF13453.10 ; zf-TFIIB ; Transc 37.2 45 0.00052 18.8 1.4 15 8-22 28-42 (42)
7 1XJH_A 33 kDa chaperonin; REDO 36.7 1E+02 0.0012 19.7 3.0 37 11-47 21-60 (62)
8 PF01502.22 ; PRA-CH ; Phosphor 36.0 59 0.00069 21.3 2.0 16 10-25 4-19 (75)
9 1UCR_A Protein dsvD; dissimila 34.2 1.2E+02 0.0014 20.7 3.2 38 13-50 40-78 (78)
10 PF18040.5 ; BPA_C ; beta porph 32.5 67 0.00077 22.7 1.9 15 54-68 61-75 (96)
11 6LNW_C Accessory secretory pro 26.3 75 0.00086 24.6 1.4 49 5-58 43-91 (154)
12 PF09999.13 ; DUF2240 ; Unchara 23.7 95 0.0011 23.5 1.5 15 9-23 32-46 (141)
13 5YAD_B Meiosis regulator and m 20.9 69 0.0008 22.0 0.3 35 6-40 40-74 (75)
14 4R7O_B Glycerophosphoryl diest 20.5 76 0.00088 23.3 0.4 48 12-59 4-51 (292)
No 1
>7ZHL_A RHS repeat protein; bacterial toxin, secreted toxin, T6SS, ADP-ribosyltransferase, translation inhibitor, TOXIN; 2.2A {Salmonella enterica subsp. enterica serovar Typhimurium}
Probab=99.97 E-value=1.2e-30 Score=175.82 Aligned_cols=106 Identities=98% Similarity=1.445 Sum_probs=100.8 Template_Neff=9.600
Q ss_pred CCceEEEecCCHHHHHHHHHHCCeecCCCCceEEecCCCHHHhhhcCCCCcEEEEeEeCHhheeeCCCCceeecCCCCHH
Q FD01542852_049 2 GLTATVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDVPEKSLVPTNEGWAKIVGPDSIE 81 (107)
Q Consensus 2 ~~~~rVGRWMs~~Ey~~M~~TG~vqe~~gG~T~Va~Pa~~~af~k~A~~GsvYVEFdVP~~sL~~~g~gW~~i~GP~s~~ 81 (107)
..++||||||+.+||++|.++|+||++.+|.|||+.|+++++|.+++++|++|||||||.++|.++..+|.++.||++..
T Consensus 2 ~~~~~vgr~ms~~e~~~m~~tg~v~~~~~g~t~v~~~~~~~~~~~~~~~g~~~vefdv~~~~l~~~~~gw~~~~g~~~~~ 81 (116)
T 7ZHL_A 2 ASTATVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDVPEKSLVPTNEGWAKIVGPDSIE 81 (116)
T ss_dssp -CEEEEEEEECHHHHHHHHHHTBCCCCTTSEEEEBSSCCTTSSTTTSCTTCEEEEEEEEGGGCBCCSSSSEEEECTTSHH
T ss_pred CcceeeccccCHHHHHHHHhhCCeeecCCCceeeecCcChhhhhhhccCCceEEEeecCHHhcccCCCcceEecCCCcHH
Confidence 35789999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHcCCCCCCCCcccceeecccC
Q FD01542852_049 82 GRLAKRKGLPVPEMPTAENITVRGEK 107 (107)
Q Consensus 82 ~rl~~~kg~~~~~~P~~~NI~~~~~k 107 (107)
++++.++|++.+.||.+.||.+...|
T Consensus 82 ~~~~~~~g~~~~~~p~~~~i~~~~~~ 107 (116)
T 7ZHL_A 82 GRLAKRKGLPVPEMPTAENITVRGEK 107 (116)
T ss_dssp HHHHHHTTCCCCCCCBCEEEEEEEEE
T ss_pred HHHHHhcCCCCCCCCCccceEEecee
Confidence 99999999999999999999887643
No 2
>7RT7_K RhsP2; Type Six Secretion System, Effector, Immunity, ADP-ribosyl transferase, RNA, Translation, Complex, TOXIN-ANTITOXIN complex; HET: TRS; 2.49A {Pseudomonas aeruginosa (strain UCBPP-PA14)}
Probab=62.51 E-value=33 Score=25.16 Aligned_cols=52 Identities=8% Similarity=-0.036 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CCCceEEEecCCHHHHHHHHHHCCeecCCCCceEEecCCCHHHhhhcCCCCcEEEEeEe
Q FD01542852_049 1 LGLTATVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDV 59 (107)
Q Consensus 1 ~~~~~rVGRWMs~~Ey~~M~~TG~vqe~~gG~T~Va~Pa~~~af~k~A~~GsvYVEFdV 59 (107)
..+...+.|.|+.++|+.+.++|.+-.......--+. .-...| ..+.|+|.+
T Consensus 23 ~~~~e~~yr~~s~~~~~~l~~t~~l~~t~et~~sp~~-~y~~~y------~g~~v~~~~ 74 (155)
T 7RT7_K 23 AQGNEIYYRTLSEQHLEILRNNFEVPPTSETFISPLQ-SYSQEY------DGKLVRLTA 74 (155)
T ss_dssp TTSCEEEEEEECHHHHHHHHHHCCCCCCTTCEEBSCH-HHHTTS------SSEEEEEEE
T ss_pred ccCCeEEEEeCCHHHHHHHHhcCCCCCCCcceecCch-hcccee------CceEEEEEe
No 3
>PF15633.10 ; Tox-ART-HYD1 ; HYD1 signature containing ADP-ribosyltransferase
Probab=60.35 E-value=47 Score=21.65 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CHHHHHHHHHHCCeecCC----------CCceEEecCCCHHH------------hhhcCCCCcEEEEeEeCHhheeeCCC
Q FD01542852_049 12 GPAEYQQMLDTGTVVQSS----------TGTTHVAYPADIDA------------FGKQAKNGAMYVEFDVPEKSLVPTNE 69 (107)
Q Consensus 12 s~~Ey~~M~~TG~vqe~~----------gG~T~Va~Pa~~~a------------f~k~A~~GsvYVEFdVP~~sL~~~g~ 69 (107)
+.+-++.++++|.+..+. |-..|++. -.|+. ....+.+.+.|||||++...+.....
T Consensus 6 ~~~g~~~I~~~~~i~~s~~~~~~~~~~~g~g~y~t~-~~p~~~~~~~~~~~~~~~~~~~~k~~~~i~id~~~~~~~~~~~ 84 (101)
T G8M247_ACECE/5 6 DEVGLNGILNSKKLKPSLKAVNPKDARYGNGQYLSD-IIPGTKTPGQLSKQFINNPFQGKRFTYYIEIDVTDLNIIKGRD 84 (101)
T ss_pred CHHHHHHHHccCCCCCCcccCCccccccCCCeeccC-CCCCCCChHHHHhhhhCCcccccceEEEEEEEcCCCeeEeCCC
Q ss_pred CceeecCCCCH
Q FD01542852_049 70 GWAKIVGPDSI 80 (107)
Q Consensus 70 gW~~i~GP~s~ 80 (107)
.=..+.+...+
T Consensus 85 ~v~~~~~~~~l 95 (101)
T G8M247_ACECE/5 85 GVYVVLGEEPL 95 (101)
T ss_pred CEEEeCCCCCC
No 4
>PF12952.11 ; DUF3841 ; Domain of unknown function (DUF3841)
Probab=49.10 E-value=25 Score=27.10 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCCcEEEEeEeCHhheeeCC-CCceeec
Q FD01542852_049 49 KNGAMYVEFDVPEKSLVPTN-EGWAKIV 75 (107)
Q Consensus 49 ~~GsvYVEFdVP~~sL~~~g-~gW~~i~ 75 (107)
..|.|.+||+||.+.+.-.. ..|..++
T Consensus 75 ~~~~v~L~levP~~~vLlSdf~~W~~vL 102 (182)
T R6JRU3_9CLOT/9 75 SAGTRTLTLCVPRDEAVFFDMYDWNKIL 102 (182)
T ss_pred CCCEEEEEEEecHHHEEEEcHHHcChhh
No 5
>PF19416.3 ; Astro_VPg ; Astrovirus VPg protein
Probab=38.44 E-value=46 Score=24.34 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=0.0 Template_Neff=4.900
Q ss_pred EecCCHHHHHHHHHHCC
Q FD01542852_049 8 GRWMGPAEYQQMLDTGT 24 (107)
Q Consensus 8 GRWMs~~Ey~~M~~TG~ 24 (107)
++..+.+||+.|++.|.
T Consensus 31 ~K~~TEEEY~eLle~G~ 47 (95)
T NS1A_TASV1/795 31 MRMLTEEEYNKMVEDGF 47 (95)
T ss_pred ccCCCHHHHHHHHHCCC
No 6
>PF13453.10 ; zf-TFIIB ; Transcription factor zinc-finger
Probab=37.20 E-value=45 Score=18.84 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred EecCCHHHHHHHHHH
Q FD01542852_049 8 GRWMGPAEYQQMLDT 22 (107)
Q Consensus 8 GRWMs~~Ey~~M~~T 22 (107)
|-|+...||+++++.
T Consensus 28 G~wl~~~~~~~l~~~ 42 (42)
T B8FEF9_DESAL/2 28 GMFFNYQELEKAGRA 42 (42)
T ss_pred eEEECHHHHHHHhhC
No 7
>1XJH_A 33 kDa chaperonin; REDOX-SWITCH DOMAIN, ZINC-BINDING DOMAIN, FOUR CYSTEINS COORDINATING ZINC, CHAPERONE; HET: ZN; NMR {Escherichia coli} SCOP: g.81.1.1
Probab=36.71 E-value=1e+02 Score=19.70 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCHHHHHHHHHHCCeecC---CCCceEEecCCCHHHhhhc
Q FD01542852_049 11 MGPAEYQQMLDTGTVVQS---STGTTHVAYPADIDAFGKQ 47 (107)
Q Consensus 11 Ms~~Ey~~M~~TG~vqe~---~gG~T~Va~Pa~~~af~k~ 47 (107)
++.+|++.|++.+...+- .-|++|..+|++..++...
T Consensus 21 l~~~el~~l~~~~~~iev~C~fC~~~y~f~~~el~~~~~~ 60 (62)
T 1XJH_A 21 LPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNN 60 (62)
T ss_dssp SCHHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHTTT
T ss_pred CCHHHHHHHHHhcCCeEEEcCCCCCEEEECHHHHHHHHhh
No 8
>PF01502.22 ; PRA-CH ; Phosphoribosyl-AMP cyclohydrolase
Probab=36.01 E-value=59 Score=21.32 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred cCCHHHHHHHHHHCCe
Q FD01542852_049 10 WMGPAEYQQMLDTGTV 25 (107)
Q Consensus 10 WMs~~Ey~~M~~TG~v 25 (107)
||+++-+++.++||++
T Consensus 4 ymn~eal~~T~~tg~~ 19 (75)
T C7LWV3_DESBD/2 4 YMNEEAWNETLRTGEV 19 (75)
T ss_pred eeCHHHHHHHHHHCCe
No 9
>1UCR_A Protein dsvD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, UNKNOWN FUNCTION; HET: SO4; 1.2A {Desulfovibrio vulgaris} SCOP: a.4.5.45
Probab=34.22 E-value=1.2e+02 Score=20.74 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=0.0 Template_Neff=6.700
Q ss_pred HHHHHHHHHHCCeecCCCC-ceEEecCCCHHHhhhcCCC
Q FD01542852_049 13 PAEYQQMLDTGTVVQSSTG-TTHVAYPADIDAFGKQAKN 50 (107)
Q Consensus 13 ~~Ey~~M~~TG~vqe~~gG-~T~Va~Pa~~~af~k~A~~ 50 (107)
..-...|++.|++.-..-| +||+..|.....-..++..
T Consensus 40 kkaikeLv~eG~L~Y~~~G~~t~i~lp~~~~~~~~~~~~ 78 (78)
T 1UCR_A 40 KKILTALVNDEVLEYWSSGSTTMYGLKGAGKQAAAEHED 78 (78)
T ss_dssp HHHHHHHHHTTSEEEEEETTEEEEEETTHHHHHHC----
T ss_pred HHHHHHHHhCCceEEEEcCCceEEEeccchhhhhhhccC
No 10
>PF18040.5 ; BPA_C ; beta porphyranase A C-terminal
Probab=32.46 E-value=67 Score=22.71 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred EEEeEeCHhheeeCC
Q FD01542852_049 54 YVEFDVPEKSLVPTN 68 (107)
Q Consensus 54 YVEFdVP~~sL~~~g 68 (107)
++||+||.+.|...+
T Consensus 61 ~~ei~VP~~~L~~~N 75 (96)
T A0A150ALL1_9BA 61 VIEVPVPYKLLKANN 75 (96)
T ss_pred EEEEEecHHHcccCc
No 11
>6LNW_C Accessory secretory protein Asp3; Complex, TRANSPORT PROTEIN; 2.9A {Streptococcus pneumoniae TIGR4}
Probab=26.34 E-value=75 Score=24.64 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred eEEEecCCHHHHHHHHHHCCeecCCCCceEEecCCCHHHhhhcCCCCcEEEEeE
Q FD01542852_049 5 ATVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFD 58 (107)
Q Consensus 5 ~rVGRWMs~~Ey~~M~~TG~vqe~~gG~T~Va~Pa~~~af~k~A~~GsvYVEFd 58 (107)
+.+-+|-|...|..-.....+---..|.+|-.. .+. ...+.+++|++++
T Consensus 43 ~~I~~W~S~~~yq~~r~~p~LPlL~~g~~Y~l~-~~~----~~~P~~sv~l~I~ 91 (154)
T 6LNW_C 43 EILKTWFSSVNYQAARTQPQLPLLKRKQEYQLS-LVF----DCQPENGVYTKIT 91 (154)
T ss_dssp CEEEEEESCCCHHHHCSCCCSCCCCTTCEEEEE-EEE----EESSTTSEEEEEE
T ss_pred ceeEEEECCCchhhcCccCCCceecCCCEEEEE-EEE----EEecCCeEEEEEE
No 12
>PF09999.13 ; DUF2240 ; Uncharacterized protein conserved in archaea (DUF2240)
Probab=23.72 E-value=95 Score=23.50 Aligned_cols=15 Identities=20% Similarity=0.789 Sum_probs=0.0 Template_Neff=6.900
Q ss_pred ecCCHHHHHHHHHHC
Q FD01542852_049 9 RWMGPAEYQQMLDTG 23 (107)
Q Consensus 9 RWMs~~Ey~~M~~TG 23 (107)
+|||++|-++.++.+
T Consensus 32 ~W~sp~~A~~li~~a 46 (141)
T A0A1U7EVC0_NAT 32 DWFSPDQAKRLVDVA 46 (141)
T ss_pred CCCCHHHHHHHHHHH
No 13
>5YAD_B Meiosis regulator and mRNA stability factor 1; Lotus domain, Marf1, meiosis, RNA binding, RNA BINDING PROTEIN; HET: SO4, MSE; 1.76A {Mus musculus}
Probab=20.90 E-value=69 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred EEEecCCHHHHHHHHHHCCeecCCCCceEEecCCC
Q FD01542852_049 6 TVGRWMGPAEYQQMLDTGTVVQSSTGTTHVAYPAD 40 (107)
Q Consensus 6 rVGRWMs~~Ey~~M~~TG~vqe~~gG~T~Va~Pa~ 40 (107)
|.+|=.+-.|+.+|.++=.|.+..+|+.....|..
T Consensus 40 rf~r~l~vsdL~km~D~v~I~~~~~~r~V~L~~~~ 74 (75)
T 5YAD_B 40 KYGHKLNVSDLYKLTDTIAIREQGNGRLVCLLPSN 74 (75)
T ss_dssp HHSSCCCHHHHTTCTTTEEEECCTTCCEEEECCC-
T ss_pred HHCCCCCHHHHhhccCeEEEEEcCCeEEEEeCCcC
No 14
>4R7O_B Glycerophosphoryl diester phosphodiesterase, putative; Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious; HET: PEG, SO4, GOL; 2.534A {Bacillus anthracis str. Ames}
Probab=20.47 E-value=76 Score=23.25 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=0.0 Template_Neff=12.300
Q ss_pred CHHHHHHHHHHCCeecCCCCceEEecCCCHHHhhhcCCCCcEEEEeEe
Q FD01542852_049 12 GPAEYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDV 59 (107)
Q Consensus 12 s~~Ey~~M~~TG~vqe~~gG~T~Va~Pa~~~af~k~A~~GsvYVEFdV 59 (107)
+.++...|.......-+-.|......++...+|......|.-+||+||
T Consensus 4 ~~~~~~~~~~~~~~~~ahrg~~~~~~~nt~~a~~~a~~~G~~~ie~Dv 51 (292)
T 4R7O_B 4 KAEGKHEWNKNKFLNIAHRGASGHAPEHTFASYDLVKKMKADYLELDI 51 (292)
T ss_dssp ---------CCCCEEEETTTTTTTSCTTSHHHHTTTTTTTCSEEEEEE
T ss_pred ccccccccccCCeeEEeCCCCCCCCCcchHHHHHHHHHcCCCEEEEEE