Query FD01543502_04073 RHS repeat family protein
Match_columns 119
No_of_seqs 107 out of 296
Neff 6.33435
Searched_HMMs 86581
Date Tue Feb 27 20:05:02 2024
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/4059180.hhr -oa3m ../results/4059180.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 6V98_A Cysteine hydrolase; Eff 100.0 3.4E-31 3.9E-36 200.2 13.4 117 2-119 36-160 (203)
2 PF20405.2 ; DUF6695 ; Family o 100.0 2E-31 2.3E-36 215.4 12.9 117 2-119 34-163 (325)
3 PF13387.10 ; DUF4105 ; Domain 95.3 0.37 4.2E-06 35.9 8.5 109 1-119 24-148 (176)
4 PF05608.16 ; DUF778 ; Protein 89.7 1.1 1.3E-05 32.0 4.0 33 86-119 78-110 (136)
5 2KYT_A Group XVI phospholipase 88.1 2.3 2.7E-05 27.9 4.4 38 82-119 84-121 (125)
6 7ZU3_A Protein 2A; 2A protein, 84.6 2.3 2.7E-05 30.3 3.2 31 88-119 74-104 (132)
7 4DPZ_X HRAS-like suppressor 2; 84.3 4.1 4.8E-05 27.5 4.2 38 82-119 84-121 (137)
8 PF12671.11 ; Amidase_6 ; Putat 81.8 3.3 3.8E-05 31.4 3.2 34 86-119 3-38 (196)
9 7ZOT_B Phospholipase A and acy 81.7 5.3 6.1E-05 26.2 3.8 33 86-118 91-123 (126)
10 7ZV1_B Protein 2A; Viral prote 80.4 4.2 4.8E-05 29.2 3.2 28 90-118 70-97 (136)
11 PF12570.12 ; DUF3750 ; Protein 78.9 8.7 0.0001 28.6 4.4 47 72-119 59-111 (130)
12 PF04970.17 ; LRAT ; Lecithin r 78.8 5 5.8E-05 27.1 3.0 30 86-116 95-124 (132)
13 PF05903.18 ; Peptidase_C97 ; P 75.2 6.3 7.3E-05 27.8 2.8 38 82-119 70-109 (142)
14 8A2G_B 2A2 protein; Viral prot 74.1 7.9 9.1E-05 28.2 3.2 29 90-119 69-97 (146)
15 7ZUA_A Protein 2A; 2A protein, 74.1 11 0.00013 25.4 3.7 31 88-119 65-95 (125)
16 7ZTW_B Protein 2A; 2A protein, 71.6 11 0.00013 27.8 3.5 31 88-119 71-101 (150)
17 PF08405.15 ; Calici_PP_N ; Vir 60.0 25 0.00029 29.0 3.7 34 86-119 66-100 (358)
18 7WHM_A PPPDE domain-containing 59.7 34 0.00039 34.6 5.0 65 52-118 1091-1156(1239)
19 3EBQ_A MOLECULE: PPPDE1 (PERMU 58.2 16 0.00019 26.9 2.2 38 82-119 78-118 (170)
20 PF10678.13 ; DUF2492 ; Protein 57.5 42 0.00048 22.7 3.9 44 55-99 16-60 (77)
21 PF14133.10 ; DUF4300 ; Domain 46.6 38 0.00043 27.8 2.7 18 8-27 175-192 (239)
22 1W5D_A PENICILLIN-BINDING PROT 44.4 90 0.001 27.3 4.8 76 9-87 24-131 (462)
23 1W79_D D-alanyl-D-alanine carb 40.8 1.2E+02 0.0013 26.9 4.9 82 2-87 14-128 (489)
24 4Q9T_A Nucleoporin NUP133; Nuc 40.3 65 0.00076 28.4 3.4 24 4-27 123-146 (459)
25 2RBG_B Putative uncharacterize 39.5 2.6E+02 0.003 21.3 5.8 49 56-105 13-64 (126)
26 PF16044.9 ; DUF4796 ; Domain o 39.0 46 0.00053 26.3 2.1 33 87-119 122-155 (193)
27 PF19025.4 ; DUF5751 ; Family o 37.5 2.5E+02 0.0029 21.0 5.5 49 56-105 6-57 (116)
28 PF15232.10 ; DUF4585 ; Domain 28.4 97 0.0011 21.2 2.0 14 14-27 8-21 (72)
29 PF20715.1 ; DUF6827 ; Domain o 27.5 2.4E+02 0.0027 22.3 4.2 45 60-104 79-127 (158)
30 PF13822.10 ; ACC_epsilon ; Acy 24.7 1E+02 0.0012 19.6 1.6 22 45-67 1-22 (60)
31 6N1N_A Beta-lactamase; antibio 23.9 1.9E+02 0.0022 21.9 3.1 19 9-27 21-39 (250)
32 PF09345.14 ; SiaC ; SiaC famil 23.3 4.3E+02 0.005 18.7 5.0 40 60-99 69-108 (119)
33 PF20625.1 ; WW_USP8 ; USP8 WW 21.0 1.2E+02 0.0014 17.7 1.2 12 15-26 11-22 (33)
34 8BRF_AAA Protein YopQ; Type th 20.5 2.4E+02 0.0028 22.6 3.1 19 9-28 115-133 (182)
35 2IF6_A Hypothetical protein yi 20.1 3.2E+02 0.0037 19.8 3.6 32 88-119 85-120 (186)
No 1
>6V98_A Cysteine hydrolase; Effector, Type 6 secretion system, cysteine hydrolase, Structural Genomics, Center for Structural Genomics of Infectious Diseases; HET: CAF; 1.8A {Vibrio cholerae}
Probab=99.97 E-value=3.4e-31 Score=200.19 Aligned_cols=117 Identities=27% Similarity=0.409 Sum_probs=103.0 Template_Neff=8.000
Q ss_pred CCCccCCceEEEEEEeCCCCeEEEEEcccccC--CCC-CeeeeecCCCceecCCCCCccccHHHHHHHHHHHhCCCCceE
Q FD01543502_040 2 MGFNLPLGHGAVVTVDPKAGKTQYYEFGRYTD--KKC-GNVRRRPVPDLSMGKDGQPTKESLDALYKFTSEKYGHGSTVT 78 (119)
Q Consensus 2 ~~~~~~lGHAgivlid~~tG~t~YyefGRY~~--p~~-G~VR~~~~p~l~i~~~g~pt~~sl~~ll~~l~~~~G~~g~i~ 78 (119)
++..+.+||||||+||+++|.++|||||||+. |.+ |+||+...|+|+|+ +|.|+++||++++.+|+.++|++|++.
T Consensus 36 ~~~~~~~GHagilli~~~~G~~~Y~efGRY~~~~p~~~G~vr~~~~~~l~i~-~g~~t~~sl~~~l~~ls~~~G~~g~i~ 114 (203)
T 6V98_A 36 AVKAPYLGHAGVILINGETGVTRYYEYGRYKNPKSDIPGNVRKVGVSNVTIK-SGLITESSLLKVLKEVSLRSGQEGRIS 114 (203)
T ss_dssp ------CCEEEEEEECTTTCCEEEEEEESCCCTTCCSSCEEEECCCCCCCEE-TTEECHHHHHHHHHHHHHHHSTTCCEE
T ss_pred CCCCCccceeEEEEEeCCCcEEEEEEeecCCCCCCCCCCcccEEEecccEEe-CCeeCcchHHHHHHHHHHhcCCCCeEE
Confidence 45677899999999999999999999999997 777 99999966999998 899999999999999999999889999
Q ss_pred EEEeCCCCHHHHHHHHHHHHh-----cCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 79 PTYYSDTNYKSANKHAEDFSK-----KHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 79 ~~~~~~~~~~~~~~~a~~~~~-----~~~~Y~~~~nnC~~F~~~~~ 119 (119)
++++...+|++|.+|+++++. .+.+|++..+||++||++++
T Consensus 115 ~~~~~~~~~~k~~~~a~~~~~~~~~~~~~~y~~~~~nC~~Fv~~~~ 160 (203)
T 6V98_A 115 GVVLRGKFFSEADSWLRGKMDLNNSPDKIPYDLDSHNCMTFVIDLA 160 (203)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTTTCTTCCCCBTTTBSHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Confidence 999999999999999999987 34477788889999999874
No 2
>PF20405.2 ; DUF6695 ; Family of unknown function (DUF6695)
Probab=99.97 E-value=2e-31 Score=215.37 Aligned_cols=117 Identities=24% Similarity=0.432 Sum_probs=100.8 Template_Neff=6.700
Q ss_pred CCCccCCceEEEEEEeCCCCeEEEEEcccccCCCC-CeeeeecC-CCceecCC---CCCccccHHHHHHHHHH----HhC
Q FD01543502_040 2 MGFNLPLGHGAVVTVDPKAGKTQYYEFGRYTDKKC-GNVRRRPV-PDLSMGKD---GQPTKESLDALYKFTSE----KYG 72 (119)
Q Consensus 2 ~~~~~~lGHAgivlid~~tG~t~YyefGRY~~p~~-G~VR~~~~-p~l~i~~~---g~pt~~sl~~ll~~l~~----~~G 72 (119)
++..+.+|||||||||+++|.++|||||||++|.+ |+||+..+ |+|+|..+ ...++.||+++|.+|+. ++|
T Consensus 34 k~~~~~~GHAavvlin~~tG~~~YydfGRY~~p~~~GrVR~~~td~~l~i~~~~~~~~g~i~nl~~il~~l~~~~~~~hG 113 (325)
T A0A5C7AGQ9_9FL 34 KTNYLRAGHAALVLINKQTGVLEYHDFGRYITPEPMGRVRGADTDNELHFPLKAIIKNNQITNLNAILKFLGTHPKLTHG 113 (325)
T ss_pred CCCcccccceEEEEEeCCCCeEEEEEecccCCCCCCCcccccccCccccCCceeEEeCCeecCHHHHHHHHhcCchhhcC
Confidence 56788999999999999999999999999998888 99999965 88887631 11277899999999977 899
Q ss_pred CCCceEEEEeCCCCHHHHHHHHHHHHh----cCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 73 HGSTVTPTYYSDTNYKSANKHAEDFSK----KHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 73 ~~g~i~~~~~~~~~~~~~~~~a~~~~~----~~~~Y~~~~nnC~~F~~~~~ 119 (119)
.|++.++++...+|++|.+||++++. .+.+|....+||++|+++++
T Consensus 114 -~G~i~as~~~~~~f~ka~~~a~~~~~~~~~~y~~f~~~~~NCsrFv~~v~ 163 (325)
T A0A5C7AGQ9_9FL 114 -DGKLVASVCNAVNYEKARAHITNMQQKHFIRYAAFIKNACNCARFVTDSL 163 (325)
T ss_pred -CCceeEEEecCCCHHHHHHHHHHHHHcCCCCccccccCCCChHHHHHHHH
Confidence 59999998889999999999999888 34466677999999998764
No 3
>PF13387.10 ; DUF4105 ; Domain of unknown function (DUF4105)
Probab=95.28 E-value=0.37 Score=35.93 Aligned_cols=109 Identities=8% Similarity=-0.054 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CCCCccCCceEEEEEEeCCCCeE--------EEEEcccccCCC-C---Ceeeee-cCCCceecCCCCCccccHHHHHHHH
Q FD01543502_040 1 GMGFNLPLGHGAVVTVDPKAGKT--------QYYEFGRYTDKK-C---GNVRRR-PVPDLSMGKDGQPTKESLDALYKFT 67 (119)
Q Consensus 1 ~~~~~~~lGHAgivlid~~tG~t--------~YyefGRY~~p~-~---G~VR~~-~~p~l~i~~~g~pt~~sl~~ll~~l 67 (119)
+.......||+.+.+.+...+.. ..+.|+- ..+. + ..++.. ..-.+.+. ..++.+.+.+.
T Consensus 24 ~~~~~s~fGH~~L~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~gl~g~~~~~~~------~~~~~~~~~~y 96 (176)
T D0LFV5_HALO1/1 24 LGQAASAFGHTFFRVERRRGDESAEKRQLLDTGIDYSA-DNTTSNALLYALMGMGGGFRGSFR------KMPYYYKVREY 96 (176)
T ss_pred cCCchHhhccEEEEEEecCCCcchHHhcccceEEEeEe-cCCCCchhHHHHHhhhcCCcEEEE------eecHHHHHHHh
Q ss_pred HHHhCCCCceEEEEeCCCCHHHHHHHHHHHHh---cCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 68 SEKYGHGSTVTPTYYSDTNYKSANKHAEDFSK---KHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 68 ~~~~G~~g~i~~~~~~~~~~~~~~~~a~~~~~---~~~~Y~~~~nnC~~F~~~~~ 119 (119)
....+. .+.. |--+.+-+++...++.... ....|.+..+||++.+.+++
T Consensus 97 ~~~~~R--~v~~-y~L~Lt~~q~~~Ll~~~~e~~~~~~~Y~~~~~NCat~l~~ll 148 (176)
T D0LFV5_HALO1/1 97 NDYESR--DLWE-YRLALDDEQLARFVAHIWELGHTYFDYFYFTENCSYHILGAL 148 (176)
T ss_pred ccccCC--ceEE-EECCCCHHHHHHHHHHHHHhccccccCcccCCccHHHHHHHH
No 4
>PF05608.16 ; DUF778 ; Protein of unknown function (DUF778)
Probab=89.71 E-value=1.1 Score=32.03 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 86 NYKSANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
.++++++.| ...-+...|++..+||-+||..++
T Consensus 78 ~~d~~v~rA-~~~~~~~~Y~l~~nNCehFv~~cl 110 (136)
T W1P136_AMBTC/4 78 TWNEGLRMA-ICQFQHRSYNIFTCNCHSFVANCL 110 (136)
T ss_pred CHHHHHHHH-HHHhccCCcccCCCChHHHHHHHH
No 5
>2KYT_A Group XVI phospholipase A2; H-REV107, tumor suppressor, phospholipase, N-terminal domain, HYDROLASE; NMR {Homo sapiens}
Probab=88.06 E-value=2.3 Score=27.88 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred eCCCCHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 82 YSDTNYKSANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
......+.+++.|.++.....+|++..+||..|+.-..
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~y~~~~~Nce~fa~~c~ 121 (125)
T 2KYT_A 84 YSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNELR 121 (125)
T ss_dssp CCCSCHHHHHHHHHHHTTCEESSCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhh
No 6
>7ZU3_A Protein 2A; 2A protein, unknown function, NlpC/P60 protein, VIRAL PROTEIN; HET: MSE; 1.74A {Human parechovirus 1}
Probab=84.63 E-value=2.3 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 88 KSANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 88 ~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
+.+++.|+++.....+|+ ..|||-+||+.+.
T Consensus 74 ~~iv~rA~s~ig~~~~Y~-~~nNCEhFa~~~~ 104 (132)
T 7ZU3_A 74 YFRIKYLESAVDSEHIFS-VDKNCETIAKDIF 104 (132)
T ss_pred HHHHHHHHHcCCCccCCC-CCcchHHHHHHHc
No 7
>4DPZ_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, HYDROLASE, TRANSFERASE; 1.25A {Homo sapiens}
Probab=84.26 E-value=4.1 Score=27.52 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred eCCCCHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 82 YSDTNYKSANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
......+.+.+.|+++.....+|.+..+||..|+.-+.
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~Y~~~~~Nce~fa~~~~ 121 (137)
T 4DPZ_X 84 YTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp SCCCCHHHHHHHHHHHTTCEEC-----CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCCCccCcHHHHHHHHH
No 8
>PF12671.11 ; Amidase_6 ; Putative amidase domain
Probab=81.81 E-value=3.3 Score=31.44 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CHHHHHHHHHHHHh-c-CCCCCCCCCcHHHHHHHhC
Q FD01543502_040 86 NYKSANKHAEDFSK-K-HDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 86 ~~~~~~~~a~~~~~-~-~~~Y~~~~nnC~~F~~~~~ 119 (119)
|.++|++||++... . ...|....++|..||..+|
T Consensus 3 ~r~~Av~YA~~~~~~~~N~~y~~~~~DCtNFvSQ~l 38 (196)
T A9KQF0_LACP7/4 3 DPALAVAYAVQFGDQEQNGIFKRMSEDCTNFISQCI 38 (196)
T ss_pred CHHHHHHHHHHHhccccccccccccchHhHHHHHHH
No 9
>7ZOT_B Phospholipase A and acyltransferase 4; phospholipase A1/A2, acyltransferase, catalytic domain, soluble domain, cytosolic protein, HYDROLASE; 1.735A {Homo sapiens}
Probab=81.67 E-value=5.3 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHh
Q FD01543502_040 86 NYKSANKHAEDFSKKHDCYSPIGNNCKTFAHDA 118 (119)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~ 118 (119)
..+.+++.|..+......|.+..+||.+|+..+
T Consensus 91 ~~~~v~~ra~~~~~~~~~Y~~~~~Nce~fa~~~ 123 (126)
T 7ZOT_B 91 PVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 123 (126)
T ss_dssp CHHHHHHHHHHHTTCEEECCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCccccchhHHHHhh
No 10
>7ZV1_B Protein 2A; Viral protein, unknown function, 2A protein, NlpC/P60 protein; 1.74A {Aichi virus A846/88}
Probab=80.42 E-value=4.2 Score=29.22 Aligned_cols=28 Identities=29% Similarity=0.215 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHhcCCCCCCCCCcHHHHHHHh
Q FD01543502_040 90 ANKHAEDFSKKHDCYSPIGNNCKTFAHDA 118 (119)
Q Consensus 90 ~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~ 118 (119)
+++.|+++.....+|++ .+||-+||+.+
T Consensus 70 iv~ra~~~~g~~~~Y~l-~~NCEHFv~~~ 97 (136)
T 7ZV1_B 70 HWTLAELQLGNKWEYSA-TNNCTHFVSSI 97 (136)
T ss_dssp HHHHHHTTTTCEECCBT-TBSHHHHHHHH
T ss_pred HHHHHHHHhCCcccCCC-CCChHHHHHhc
No 11
>PF12570.12 ; DUF3750 ; Protein of unknown function (DUF3750)
Probab=78.89 E-value=8.7 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred CCCCceEEEEeCCCCHHHHHHHHHHHHh---cCC--CCC-CCCCcHHHHHHHhC
Q FD01543502_040 72 GHGSTVTPTYYSDTNYKSANKHAEDFSK---KHD--CYS-PIGNNCKTFAHDAA 119 (119)
Q Consensus 72 G~~g~i~~~~~~~~~~~~~~~~a~~~~~---~~~--~Y~-~~~nnC~~F~~~~~ 119 (119)
|. ++.........+.++|++.+++... -.. .|. +...||-||++-+|
T Consensus 59 g~-~p~~~~~~~G~~A~~~i~~i~~~~~~Yp~~~~~~Y~~wPGPNSNTfv~wvl 111 (130)
T Q8U5H6_AGRFC/6 59 SN-TPRQVVAIHGAAAEKLIPKIEKAIADYPYGKPGGYRIYPGPNSNTFVAHVL 111 (130)
T ss_pred CC-CCEEEEEEecHHHHHHHHHHHHHHHhCCCCCCCCcceeeCCCchHHHHHHH
No 12
>PF04970.17 ; LRAT ; Lecithin retinol acyltransferase
Probab=78.81 E-value=5 Score=27.08 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCcHHHHHH
Q FD01543502_040 86 NYKSANKHAEDFSKKHDCYSPIGNNCKTFAH 116 (119)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~ 116 (119)
..+.+++.|+++... ..|++..+||..|+.
T Consensus 95 ~~~~i~~~a~~~~~~-~~Y~l~~~NCehf~~ 124 (132)
T Q5EAQ3_DANRE/4 95 AAEEVARRAEKLVGH-FPYSLMWNNCEHFVT 124 (132)
T ss_pred CHHHHHHHHHHHhCC-CCCCCcccchhHhcc
No 13
>PF05903.18 ; Peptidase_C97 ; PPPDE putative peptidase domain
Probab=75.24 E-value=6.3 Score=27.76 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred eCCCCHHHHHHHHHHHHh--cCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 82 YSDTNYKSANKHAEDFSK--KHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~--~~~~Y~~~~nnC~~F~~~~~ 119 (119)
......+...+++..++. ....|++..+||..|+.+++
T Consensus 70 ~t~~s~~~~~~~~~~~~~~~~~~~Y~l~~~NC~~F~~~l~ 109 (142)
T Q6C289_YARLI/6 70 ETHVPEELIQEYLNEIRGEYTPDKYNLFDHNCNHFTQELS 109 (142)
T ss_pred eecCCHHHHHHHHHHHhccCCcccCCCccccccccHHHHH
No 14
>8A2G_B 2A2 protein; Viral protein, unknown function, 2A protein, NlpC/P60 protein; HET: PG4; 1.56A {Sebokele virus 1}
Probab=74.13 E-value=7.9 Score=28.17 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred HHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 90 ANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 90 ~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
+++.|.++.....+|+ ..+||-+|++.+.
T Consensus 69 iv~rA~~~ig~~~~Y~-~~~NCEhFa~~~~ 97 (146)
T 8A2G_B 69 TDKYVNSLVGTKHIFS-ATQNCETIARDVF 97 (146)
T ss_dssp HHHHHHHTTTSCCSEE-ECGGGTTHCCCCC
T ss_pred HHHHHHHhcCCcccCC-CCccHHHHHHHHc
No 15
>7ZUA_A Protein 2A; 2A protein, unknown function, NlpC/P60 protein, VIRAL PROTEIN; 1.68A {Ljungan virus 64-7855}
Probab=74.09 E-value=11 Score=25.37 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 88 KSANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 88 ~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
+.+++.+..+.....+|+ ..+||.+|+..+.
T Consensus 65 ~~~~~~a~~~~~~~~~Y~-~~~Nce~fa~~~~ 95 (125)
T 7ZUA_A 65 YFTEKYVNSMVGSKHIFS-CTTNCETIARDIF 95 (125)
T ss_pred hHHHHHHHHhhCCCcccC-CCCcHHHHHHHhc
No 16
>7ZTW_B Protein 2A; 2A protein, unknown function, NlpC/P60 protein, VIRAL PROTEIN; 1.93A {Human parechovirus 1}
Probab=71.55 E-value=11 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 88 KSANKHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 88 ~~~~~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
..+++.|+++.....+|+ ..+||-+|++.+.
T Consensus 71 ~~iv~rA~~~ig~~~~Y~-~~nNCEHFa~~~~ 101 (150)
T 7ZTW_B 71 YFRIKYLESAVDSEHIFS-VDKNCETIAKDIF 101 (150)
T ss_dssp HHHHHHHHHSSSCCCSEE-ECGGGTTHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHc
No 17
>PF08405.15 ; Calici_PP_N ; Viral polyprotein N-terminal
Probab=59.99 E-value=25 Score=29.02 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CHHHHH-HHHHHHHhcCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 86 NYKSAN-KHAEDFSKKHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 86 ~~~~~~-~~a~~~~~~~~~Y~~~~nnC~~F~~~~~ 119 (119)
..+.+. +.+.++.....+|.+..+||-+|+..+.
T Consensus 66 ~~~~~~~~~a~~~~g~~~~y~~~~~NCehfa~~~~ 100 (358)
T POLG_NVN68/183 66 PKQRLTYDQLKELENEPWPYAAVTNNCFEFCCQVM 100 (358)
T ss_pred ChHhhHHHHHHHHCCCCCCCCcccCCHHHHHHHHc
No 18
>7WHM_A PPPDE domain-containing protein; Cell attachment, Membrane penetration, VIRAL PROTEIN;{Bombyx mori cypovirus 1}
Probab=59.70 E-value=34 Score=34.59 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred CCCCccccHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHHHHh-cCCCCCCCCCcHHHHHHHh
Q FD01543502_040 52 DGQPTKESLDALYKFTSEKYGHGSTVTPTYYSDTNYKSANKHAEDFSK-KHDCYSPIGNNCKTFAHDA 118 (119)
Q Consensus 52 ~g~pt~~sl~~ll~~l~~~~G~~g~i~~~~~~~~~~~~~~~~a~~~~~-~~~~Y~~~~nnC~~F~~~~ 118 (119)
+...+.+-++.|...+.++-=..-.+.-....+.-..+|++-+- .. ....|.+..|||.+|++++
T Consensus 1091 ~~lttD~kWe~I~~kv~~rVl~s~~V~s~~ls~~~~~~aLedLi--~Npp~fkYNLL~nNCQnFa~Dl 1156 (1239)
T 7WHM_A 1091 DGLSTEQKWMDISRGVDAKIISADMVSEEFLSSKYTGQMIDELI--NSPPQFNYSLIYRNCQDFVLDV 1156 (1239)
T ss_dssp TTCCHHHHHHHHHHTTCEECCCSCCCCEECCCCHHHHHHHHHHH--HSCCCCCHHHHCSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcceeccccceeeecCCHHHHHHHHHHH--hCCCCCCCcccccchHHHHHHH
No 19
>3EBQ_A MOLECULE: PPPDE1 (PERMUTED PAPAIN FOLD PEPTIDASES OF DSRNA VIRUSES AND EUKARYOTES 1), UPF0326 protein FAM152B; PEPTIDASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE, THIOL PROTEASE, UBL CONJUGATION PATHWAY; 1.9A {Homo sapiens}
Probab=58.18 E-value=16 Score=26.94 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred eCCCCHHHHHHHHHHHHh---cCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 82 YSDTNYKSANKHAEDFSK---KHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~---~~~~Y~~~~nnC~~F~~~~~ 119 (119)
......+...++++.+.. ....|++..+||..|+.+++
T Consensus 78 ~T~~s~~ev~~~l~~l~~~~~~~~~Y~l~~~NC~hF~~~l~ 118 (170)
T 3EBQ_A 78 STEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 118 (170)
T ss_dssp EECCCHHHHHHHHHHHHTTTCCGGGCBTTTBCHHHHHHHHH
T ss_pred eeeCCHHHHHHHHHHhccccCCccccccccccCcchHHHHH
No 20
>PF10678.13 ; DUF2492 ; Protein of unknown function (DUF2492)
Probab=57.47 E-value=42 Score=22.73 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=0.0 Template_Neff=6.100
Q ss_pred CccccHHHHHHHHHHHhCCCCceEEEEeCCC-CHHHHHHHHHHHHh
Q FD01543502_040 55 PTKESLDALYKFTSEKYGHGSTVTPTYYSDT-NYKSANKHAEDFSK 99 (119)
Q Consensus 55 pt~~sl~~ll~~l~~~~G~~g~i~~~~~~~~-~~~~~~~~a~~~~~ 99 (119)
+.+-+.++|...+..++|. ....-++-... +++.+++|..++.+
T Consensus 16 ~~~~t~~~L~~~i~~~FG~-~a~F~tCs~~~m~~~~ll~FL~~rgK 60 (77)
T A6TB58_KLEP7/2 16 GESWTVASLEAAIRRRFGE-EARFHTCSAENLSAAQLVAFLEKKGK 60 (77)
T ss_pred CCCcCHHHHHHHHHHHHhh-cCeeecCCCCCCCHHHHHHHHHHCCC
No 21
>PF14133.10 ; DUF4300 ; Domain of unknown function (DUF4300)
Probab=46.59 E-value=38 Score=27.81 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=0.0 Template_Neff=6.300
Q ss_pred CceEEEEEEeCCCCeEEEEE
Q FD01543502_040 8 LGHGAVVTVDPKAGKTQYYE 27 (119)
Q Consensus 8 lGHAgivlid~~tG~t~Yye 27 (119)
+||+|||+=+ +.| ..+.|
T Consensus 175 iGH~GVLi~~-~~g-~lFiE 192 (239)
T Q73J02_TREDE/3 175 IGHTGVLLQN-NST-FLFVE 192 (239)
T ss_pred EEEEEEEEEe-CCe-EEEEE
No 22
>1W5D_A PENICILLIN-BINDING PROTEIN; PENICILLIN-BINDING PROTEIN, D-ALA-D-ALA-CARBOXYPEPTIDASE, PEPTIDOGLYCAN, BACILLUS SUBTILIS, BETA-LACTAM, HYDROLASE, PEPTIDOGLYCAN SYNTHESIS; 2.1A {BACILLUS SUBTILIS} SCOP: e.3.1.3
Probab=44.38 E-value=90 Score=27.26 Aligned_cols=76 Identities=14% Similarity=0.344 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred ceEEEEEEeCCCCeEEE---------------------------EEcccccCCCC--Ceeeee-cCCCceecCCCCCc--
Q FD01543502_040 9 GHGAVVTVDPKAGKTQY---------------------------YEFGRYTDKKC--GNVRRR-PVPDLSMGKDGQPT-- 56 (119)
Q Consensus 9 GHAgivlid~~tG~t~Y---------------------------yefGRY~~p~~--G~VR~~-~~p~l~i~~~g~pt-- 56 (119)
.+.|+.++|.++|+..| -|| ||.+... |.++.- -..+|.|...|+|+
T Consensus 24 ~~~~~~v~d~~~g~~l~~~n~~~~~~PAS~~Kl~Tt~aAL~~LG~d~-rf~T~~~~~g~~~~g~l~g~L~i~g~GDP~l~ 102 (462)
T 1W5D_A 24 AMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENY-SFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLL 102 (462)
T ss_dssp CEEEEEEEETTTCCEEEEESTTSCBCCGGGGHHHHHHHHHHHHCTTC-CCEEEEEESSCCSSSEECSCEEEEECSCTTCC
T ss_pred CEEEEEEEECCCCCEEEEecCCCCcCCHHHHHHHHHHHHHHHhCCCc-EEEeEEEEcCeeeCCEEeccEEEEecCCCCCC
Q ss_pred cccHHHHHHHHHHHhCCCCceEEEEeCCCCH
Q FD01543502_040 57 KESLDALYKFTSEKYGHGSTVTPTYYSDTNY 87 (119)
Q Consensus 57 ~~sl~~ll~~l~~~~G~~g~i~~~~~~~~~~ 87 (119)
.+.|.++...| +..|- ..|.+.++.+..+
T Consensus 103 ~~~l~~l~~~L-~~~GI-~~i~G~i~~d~~~ 131 (462)
T 1W5D_A 103 PSDFDKMAEIL-KHSGV-KVIKGNLIGDDTW 131 (462)
T ss_dssp HHHHHHHHHHH-HHTTC-CEESSCEEEECTT
T ss_pred hHHHHHHHHHH-HHCCC-CEEECCEEecCcc
No 23
>1W79_D D-alanyl-D-alanine carboxypeptidase; PENICILLIN-BINDING, PEPTIDOGLYCAN, ACTINOMADURA, TRANSPEPTIDASE, ANTIBIOTIC RESISTANCE, HYDROLASE; HET: SO4; 1.8A {Actinomadura sp. R39} SCOP: e.3.1.3
Probab=40.76 E-value=1.2e+02 Score=26.92 Aligned_cols=82 Identities=27% Similarity=0.337 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred CCCccCCceEEEEEEeCCCCeEEEE---------------------------EcccccCCCC--Ce--eeeecCCCceec
Q FD01543502_040 2 MGFNLPLGHGAVVTVDPKAGKTQYY---------------------------EFGRYTDKKC--GN--VRRRPVPDLSMG 50 (119)
Q Consensus 2 ~~~~~~lGHAgivlid~~tG~t~Yy---------------------------efGRY~~p~~--G~--VR~~~~p~l~i~ 50 (119)
......-++.||+++|.++|++.|- || ||.+... |. ++.-. .+|.|.
T Consensus 14 ~~~~~~~~~~g~~v~d~~~g~~l~~~n~~~~~~PAS~~Kl~Ta~aAL~~LGp~~-rf~T~v~~~g~~~~~~g~-gdL~i~ 91 (489)
T 1W79_D 14 EDPALEGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVLGADH-SFGTEVAAESAPGRRGEV-QDLYLV 91 (489)
T ss_dssp TCGGGTTCEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHTCTTC-CCEEEEEESSCCCTTCEE-SCEEEE
T ss_pred hChhhCCCEEEEEEEECCCCCEEEEecCCCCcCCHHHHHHHHHHHHHHHHCCCc-EEEEEEEecCCCCcCCCc-ccEEEE
Q ss_pred CCCCCcc--ccHHHHHHHHHHHhCCCCceEEEEeCCCCH
Q FD01543502_040 51 KDGQPTK--ESLDALYKFTSEKYGHGSTVTPTYYSDTNY 87 (119)
Q Consensus 51 ~~g~pt~--~sl~~ll~~l~~~~G~~g~i~~~~~~~~~~ 87 (119)
..|+|+. +.|.+|.++| +..|- ..|.+.++.+..+
T Consensus 92 g~GDP~l~~~~l~~l~~~l-~~~GI-~~i~G~i~~d~s~ 128 (489)
T 1W79_D 92 GRGDPTLSAEDLDAMAAEV-AASGV-RTVRGDLYADDTW 128 (489)
T ss_dssp ECSCTTCCHHHHHHHHHHH-HHTTC-CEECSCEEEECTT
T ss_pred ecCCCCCCHHHHHHHHHHH-HHCCC-CEEECCEEEcCcc
No 24
>4Q9T_A Nucleoporin NUP133; Nuclear Pore Complex, Nucleoporin, Nup84 complex, ALPS motif, Structural genomics, PSI-Biology, Nucleocytoplasmic Transport: a Target for; HET: MSE; 3.0A {Vanderwaltozyma polyspora}
Probab=40.28 E-value=65 Score=28.41 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred CccCCceEEEEEEeCCCCeEEEEE
Q FD01543502_040 4 FNLPLGHGAVVTVDPKAGKTQYYE 27 (119)
Q Consensus 4 ~~~~lGHAgivlid~~tG~t~Yye 27 (119)
.+....+.|+|+|+..+|..+|++
T Consensus 123 ~~~~~~~pgll~v~s~~G~iryW~ 146 (459)
T 4Q9T_A 123 INSGKFNNGICIINKKNSQFLYFE 146 (459)
T ss_dssp -------CEEEEECTTTCEEEEES
T ss_pred cCCCCCCCeEEEEECCCCEEEEee
No 25
>2RBG_B Putative uncharacterized protein ST0493; Hypothetical protein, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN; HET: MSE; 1.75A {Sulfolobus tokodaii}
Probab=39.45 E-value=2.6e+02 Score=21.30 Aligned_cols=49 Identities=6% Similarity=0.147 Sum_probs=0.0 Template_Neff=4.100
Q ss_pred ccccHHHHHHHH---HHHhCCCCceEEEEeCCCCHHHHHHHHHHHHhcCCCCC
Q FD01543502_040 56 TKESLDALYKFT---SEKYGHGSTVTPTYYSDTNYKSANKHAEDFSKKHDCYS 105 (119)
Q Consensus 56 t~~sl~~ll~~l---~~~~G~~g~i~~~~~~~~~~~~~~~~a~~~~~~~~~Y~ 105 (119)
+.+.|.++++++ .+++|. -.+..-++++..+-+..+++++...+...++
T Consensus 13 ~~e~l~~~~R~~frd~r~~G~-kkv~i~VIS~~p~~~~~~~~ReaILDNIdLg 64 (126)
T 2RBG_B 13 NNDNFENYFRKIFLDVRSSGS-KKTTINVFTEIQYQELVTLIREALLENIDIG 64 (126)
T ss_dssp CGGGHHHHHHHHHHHHHHHTC-SEEEEEEECSSCHHHHHHHTHHHHHTTTTSE
T ss_pred chhhHHHHHHHHHHHHHhhCC-ccEEEEEecCCCHHHHHHHHHHHHHhhcCcE
No 26
>PF16044.9 ; DUF4796 ; Domain of unknown function (DUF4796)
Probab=38.96 E-value=46 Score=26.32 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCCCcHHHHHHHhC
Q FD01543502_040 87 YKSANKHAEDFSK-KHDCYSPIGNNCKTFAHDAA 119 (119)
Q Consensus 87 ~~~~~~~a~~~~~-~~~~Y~~~~nnC~~F~~~~~ 119 (119)
+|+.++-..+... ....|....+||-.||.+.+
T Consensus 122 WD~~L~~~~~~~~w~~~~Y~e~~~NCfdFVl~FL 155 (193)
T E9GGQ0_DAPPU/6 122 LDKVLKNTITMDTWAAERYDEVNNNCFDYVISVL 155 (193)
T ss_pred HHHHHHHHHhCCCCcchhhcccccchHHHHHHHH
No 27
>PF19025.4 ; DUF5751 ; Family of unknown function (DUF5751)
Probab=37.47 E-value=2.5e+02 Score=21.05 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=0.0 Template_Neff=4.100
Q ss_pred ccccHHHHHHHH---HHHhCCCCceEEEEeCCCCHHHHHHHHHHHHhcCCCCC
Q FD01543502_040 56 TKESLDALYKFT---SEKYGHGSTVTPTYYSDTNYKSANKHAEDFSKKHDCYS 105 (119)
Q Consensus 56 t~~sl~~ll~~l---~~~~G~~g~i~~~~~~~~~~~~~~~~a~~~~~~~~~Y~ 105 (119)
..++|.++++++ .+++|. -.+..-++++..+-+..+.+++...+...++
T Consensus 6 ~~e~l~~~~r~~~rd~r~~G~-kkv~i~VIS~~~~~~~~~~~ReaILdNIdLg 57 (116)
T A4YEK5_METS5/1 6 REETLAEVFRKLMKDARTSGF-RKVIINVISPLPHWQVLASAREAILDNIDLG 57 (116)
T ss_pred CHHHHHHHHHHHHHHHHHcCC-CeEEEEEeCCCChHHHHHHHHHHHHHhccee
No 28
>PF15232.10 ; DUF4585 ; Domain of unknown function (DUF4585)
Probab=28.41 E-value=97 Score=21.23 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=0.0 Template_Neff=4.000
Q ss_pred EEEeCCCCeEEEEE
Q FD01543502_040 14 VTVDPKAGKTQYYE 27 (119)
Q Consensus 14 vlid~~tG~t~Yye 27 (119)
+++|++||+..|-|
T Consensus 8 lL~Dp~sGqy~~Vd 21 (72)
T W5NV53_SHEEP/1 8 VLQDPQSGEYFVFD 21 (72)
T ss_pred eeeCCCCCcEEEEe
No 29
>PF20715.1 ; DUF6827 ; Domain of unknown function (DUF6827)
Probab=27.49 E-value=2.4e+02 Score=22.33 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=0.0 Template_Neff=3.800
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHHHHh----cCCCC
Q FD01543502_040 60 LDALYKFTSEKYGHGSTVTPTYYSDTNYKSANKHAEDFSK----KHDCY 104 (119)
Q Consensus 60 l~~ll~~l~~~~G~~g~i~~~~~~~~~~~~~~~~a~~~~~----~~~~Y 104 (119)
|.+|++++++.+|-.|.-..+-....|.++-.+.+.+... ..+.|
T Consensus 79 inEl~E~~sR~~G~~Gtg~~a~~~v~Nm~eh~~~~~~~Y~~Ll~~yP~y 127 (158)
T A0A384KPS9_PLA 79 VNELLEQSSRASGLAGTHILASFKIENMNEHIEFLKTKYDELLLKYPLY 127 (158)
T ss_pred HHHHHHHHHhhcCCCccccccccccccHHHHHHHHHHHHHHHHHHCchh
No 30
>PF13822.10 ; ACC_epsilon ; Acyl-CoA carboxylase epsilon subunit
Probab=24.72 E-value=1e+02 Score=19.56 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=0.0 Template_Neff=6.800
Q ss_pred CCceecCCCCCccccHHHHHHHH
Q FD01543502_040 45 PDLSMGKDGQPTKESLDALYKFT 67 (119)
Q Consensus 45 p~l~i~~~g~pt~~sl~~ll~~l 67 (119)
|.+++-. |+||.+.|..|..-|
T Consensus 1 ~~~rvv~-G~pt~eElAAl~avL 22 (60)
T B2GL76_KOCRD/5 1 PLFTVTR-GNPGPEELAALTAVL 22 (60)
T ss_pred CCeEEEe-CCCCHHHHHHHHHHH
No 31
>6N1N_A Beta-lactamase; antibiotic resistance, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, HYDROLASE; HET: KCX, SO4, GOL, MSE; 1.601A {Sebaldella termitidis} SCOP: e.3.1.0, l.1.1.1
Probab=23.90 E-value=1.9e+02 Score=21.93 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred ceEEEEEEeCCCCeEEEEE
Q FD01543502_040 9 GHGAVVTVDPKAGKTQYYE 27 (119)
Q Consensus 9 GHAgivlid~~tG~t~Yye 27 (119)
++.+++++|.++|+...++
T Consensus 21 ~~~~~~~~d~~~g~~~~~n 39 (250)
T 6N1N_A 21 ITGSVTIYDYKNKIWIYSN 39 (250)
T ss_dssp CEEEEEEEETTTTEEEESS
T ss_pred CeEEEEEEECCCCEEEEeC
No 32
>PF09345.14 ; SiaC ; SiaC family regulatory phosphoprotein
Probab=23.29 E-value=4.3e+02 Score=18.72 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHHHHh
Q FD01543502_040 60 LDALYKFTSEKYGHGSTVTPTYYSDTNYKSANKHAEDFSK 99 (119)
Q Consensus 60 l~~ll~~l~~~~G~~g~i~~~~~~~~~~~~~~~~a~~~~~ 99 (119)
|-+|++.|....-.+..+...|+...+=+.|.+..+.++.
T Consensus 69 L~~ll~~l~~~~~~g~~v~i~W~y~~~Dedm~e~G~d~~~ 108 (119)
T E4TT21_MARTH/6 69 LFDLLMELKNMEDKGTKLKIIWNFVEGDEEMGEEIEDFRD 108 (119)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeCCCCHHHHHHHHHHHH
No 33
>PF20625.1 ; WW_USP8 ; USP8 WW domain
Probab=21.04 E-value=1.2e+02 Score=17.70 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=0.0 Template_Neff=2.300
Q ss_pred EEeCCCCeEEEE
Q FD01543502_040 15 TVDPKAGKTQYY 26 (119)
Q Consensus 15 lid~~tG~t~Yy 26 (119)
+.|..||..+||
T Consensus 11 fld~~TGt~rYy 22 (33)
T A0A1U7SHA0_ALL 11 FPDTTTGTFRYY 22 (33)
T ss_pred ccccCcceeEEe
No 34
>8BRF_AAA Protein YopQ; Type three secretion system substrate, effector, TOXIN; HET: SO4; 2.74A {Yersinia enterocolitica}
Probab=20.54 E-value=2.4e+02 Score=22.63 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred ceEEEEEEeCCCCeEEEEEc
Q FD01543502_040 9 GHGAVVTVDPKAGKTQYYEF 28 (119)
Q Consensus 9 GHAgivlid~~tG~t~Yyef 28 (119)
||+-++- ++.+|...|+||
T Consensus 115 GHvVV~r-~d~~~~~~~~DY 133 (182)
T 8BRF_AAA 115 GYVITGK-KDSKGNIELYDP 133 (182)
T ss_pred eEEEEEE-eCCCceEEEEec
No 35
>2IF6_A Hypothetical protein yiiX; structural genomics, metalloprotein, hypothetical, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics; 1.8A {Escherichia coli} SCOP: d.3.1.21
Probab=20.11 E-value=3.2e+02 Score=19.83 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=0.0 Template_Neff=10.500
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC----cHHHHHHHhC
Q FD01543502_040 88 KSANKHAEDFSKKHDCYSPIGN----NCKTFAHDAA 119 (119)
Q Consensus 88 ~~~~~~a~~~~~~~~~Y~~~~n----nC~~F~~~~~ 119 (119)
++|.++++++......|.+... .|+.||..+.
T Consensus 85 ~~~~~~~~~~~~~~y~~~~~~~~~~~~CSelv~~~~ 120 (186)
T 2IF6_A 85 QKLAQTAKRYLGKPYDFSFSWSDDRQYCSEVVWKVY 120 (186)
T ss_dssp HHHHHHHGGGTTCCBCTTCCSSSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCceeHHHHHHHHH