Query MBL3828645.1/108-193
Match_columns 57
No_of_seqs 100 out of 108
Neff 4.00333
Searched_HMMs 93885
Date Fri Jul 11 01:11:24 2025
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -d /cluster/toolkit/production/databases/hh-suite/pfama/pfama -o ../results/7784730.hhr -oa3m ../results/7784730.a3m -p 20 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 2 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build-new/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08774.16 ; VRR_NUC ; VRR-NUC 98.1 2.5E-05 2.6E-10 47.1 5.2 50 5-55 64-121 (127)
2 5Y7Q_A Fanconi-associated nucl 95.2 0.1 1.1E-06 40.7 5.0 45 6-56 527-571 (580)
3 4QBO_A Nuclease; nuclease, HYD 95.1 0.19 2E-06 29.0 5.0 43 6-56 33-75 (92)
4 4REC_A Fanconi-associated nucl 93.8 0.26 2.8E-06 38.4 4.6 46 6-57 589-634 (647)
5 PF14281.11 ; PDDEXK_4 ; PD-(D/ 93.7 0.17 1.8E-06 33.3 2.9 37 4-48 72-108 (192)
6 4QBN_B Nuclease; Nuclease, HYD 93.2 0.8 8.6E-06 26.1 4.9 44 6-56 34-78 (93)
7 9GY0_A Fanconi-associated nucl 90.7 1.2 1.3E-05 38.0 5.1 45 6-56 963-1007(1021)
8 PF20713.2 ; DUF6826 ; Domain o 88.4 2.5 2.7E-05 26.8 4.2 43 4-47 38-86 (94)
9 4QBL_C VRR-NUC; Nuclease, HYDR 87.5 4.5 4.8E-05 26.2 5.0 44 6-56 69-115 (145)
10 PF01646.21 ; Herpes_UL24 ; Her 85.3 1.5 1.6E-05 31.2 2.2 23 4-30 58-80 (174)
11 6OKH_B Uncharacterized protein 84.3 5.6 6E-05 25.6 4.3 48 1-48 81-133 (190)
12 PF15516.11 ; BpuSI_N ; BpuSI N 84.1 6.5 7E-05 26.3 4.6 43 4-51 43-93 (152)
13 1GEF_A HOLLIDAY JUNCTION RESOL 82.9 6.1 6.5E-05 23.9 3.8 35 6-48 32-69 (123)
14 3IJM_A uncharacterized restric 80.6 6.8 7.2E-05 25.1 3.6 37 1-42 63-99 (151)
15 3DNX_A uncharacterized protein 78.5 3.3 3.6E-05 26.9 1.8 38 4-48 41-79 (153)
16 3OT2_B Uncharacterized protein 78.3 20 0.00021 22.6 5.1 56 2-57 76-140 (187)
17 8TI9_D Shedu protein SduA; She 76.1 15 0.00016 25.4 4.5 40 1-46 92-150 (229)
18 2WCW_D HJC; TYPE II RESTRICTIO 75.8 18 0.00019 22.1 4.3 36 5-48 39-77 (139)
19 1OB8_A HOLLIDAY-JUNCTION RESOL 72.8 17 0.00018 22.9 3.8 44 6-57 38-86 (135)
20 PF15649.11 ; Tox-REase-7 ; Res 72.4 11 0.00012 22.7 2.8 47 1-57 28-76 (88)
21 PF06319.17 ; MmcB-like ; DNA r 71.2 3.7 3.9E-05 26.7 0.6 38 4-48 42-80 (148)
22 1WDJ_A hypothetical protein TT 70.7 13 0.00014 23.4 3.0 42 1-42 80-130 (187)
23 PF01870.23 ; Hjc ; Archaeal ho 61.3 43 0.00046 18.3 4.2 37 4-48 24-63 (87)
24 3S1S_A restriction endonucleas 60.8 24 0.00025 29.1 3.4 49 4-57 57-111 (878)
25 PF05685.17 ; Uma2 ; Putative r 60.1 54 0.00058 21.5 4.4 49 1-49 69-124 (185)
26 8GLV_Jo Radial spoke protein 1 56.4 79 0.00084 23.0 5.0 48 5-53 262-315 (346)
27 PF14082.11 ; SduA_C ; Shedu pr 56.2 24 0.00026 23.0 2.3 25 4-36 43-67 (170)
28 3LZ8_B Putative chaperone DnaJ 53.8 84 0.00089 22.4 4.7 47 5-52 269-318 (329)
29 PF04411.17 ; PDDEXK_7 ; PD-(D/ 53.2 48 0.00051 21.4 3.3 43 1-46 70-121 (149)
30 PF18743.6 ; AHJR-like ; REase_ 53.0 84 0.0009 19.1 4.8 43 6-56 45-87 (123)
31 8TI8_C Shedu protein SduA; She 52.9 68 0.00072 24.2 4.4 39 4-48 248-305 (382)
32 PF10847.13 ; DUF2656 ; Protein 50.5 30 0.00031 24.6 2.1 15 26-40 49-63 (141)
33 PF18742.6 ; DpnII-MboI ; REase 50.2 40 0.00042 22.4 2.6 29 21-49 71-101 (148)
34 PF19986.4 ; DUF6422 ; Family o 47.1 42 0.00045 22.2 2.3 17 32-48 3-19 (94)
35 6JZB_A Chaperone protein DnaJ; 43.5 1.6E+02 0.0018 21.7 5.0 43 5-48 313-360 (385)
36 PF10069.14 ; DICT ; Sensory do 43.4 49 0.00052 20.6 2.1 29 29-57 46-74 (121)
37 PF10117.14 ; McrBC ; McrBC 5-m 42.1 70 0.00075 22.3 2.9 36 5-48 262-303 (318)
38 PF20472.3 ; PDDEXK_11 ; PD-(D/ 41.7 1.1E+02 0.0012 20.7 3.7 41 1-47 53-93 (155)
39 1KNV_A Bse634I restriction end 40.7 1.1E+02 0.0012 23.7 4.0 36 6-49 145-184 (293)
40 PF03838.19 ; RecU ; Recombinat 40.6 1.3E+02 0.0014 20.2 3.8 44 6-57 54-103 (161)
41 8PS4_A Shedu effector protein; 40.5 1.2E+02 0.0012 23.8 4.1 39 1-46 266-323 (411)
42 5XKT_A Urease accessory protei 36.2 66 0.0007 19.8 1.9 26 1-26 136-162 (200)
43 PF08011.16 ; PDDEXK_9 ; PD-(D/ 35.7 1.4E+02 0.0015 16.7 3.0 33 5-47 31-63 (96)
44 PF02078.21 ; Synapsin ; Synaps 35.1 1.3E+02 0.0014 19.2 3.1 29 5-33 71-99 (102)
45 7VSR_M Protein McrC; AAA+ prot 34.9 84 0.0009 22.4 2.5 36 5-48 204-246 (310)
46 PF08722.16 ; Tn7_TnsA-like_N ; 33.7 1.3E+02 0.0014 15.6 4.3 36 5-48 26-61 (76)
47 PF21420.2 ; Tautomerase-like ; 33.2 1.6E+02 0.0017 17.6 3.0 23 26-48 2-25 (45)
48 9IAB_A PD-(D/E)XK endonuclease 32.8 1.6E+02 0.0017 18.4 3.1 37 5-48 147-183 (273)
49 PF20452.3 ; Calmod_bind_C ; Ca 32.5 1.5E+02 0.0016 16.1 2.9 28 21-48 15-47 (60)
50 6JC3_A Nucleocapsid; self-capp 31.7 2E+02 0.0021 23.7 4.2 33 4-50 93-134 (398)
51 4TKD_D Holliday junction resol 31.5 2.3E+02 0.0024 17.8 4.1 35 6-48 41-78 (141)
52 9IAC_A Similar to tr|Q3MCC8|Q3 31.4 2.2E+02 0.0024 17.8 3.6 36 5-48 153-189 (277)
53 PF21192.2 ; NMD3_OB ; NMD3 OB- 31.0 65 0.00069 19.9 1.3 9 4-12 80-88 (89)
54 3K93_A phage related exonuclea 30.1 2.8E+02 0.003 18.8 4.2 34 6-49 99-149 (223)
55 5JOQ_A Lmo2184 protein; CENTER 30.1 1.2E+02 0.0013 20.5 2.4 44 5-48 90-134 (290)
56 PF05961.16 ; Chordopox_A13L ; 29.4 1.3E+02 0.0014 19.1 2.3 34 12-46 28-64 (68)
57 3SXU_A DNA polymerase III subu 28.8 1.2E+02 0.0013 20.1 2.2 42 5-46 95-136 (150)
58 2X4L_A FERRIC-SIDEROPHORE RECE 28.4 1E+02 0.0011 21.6 2.0 44 5-48 110-163 (325)
59 PF18891.5 ; FANCL_d3 ; FANCL U 27.7 34 0.00037 21.6 -0.3 12 22-33 85-97 (98)
60 6IY6_I Aminoacyl tRNA synthase 27.4 99 0.0011 20.1 1.7 12 7-18 8-19 (215)
61 6ALL_A Fe(3+)-citrate-binding 26.3 1.1E+02 0.0012 20.9 1.8 44 5-48 114-162 (324)
62 1L6X_B Minimized B-domain of P 26.2 1.5E+02 0.0016 16.4 2.0 13 34-46 16-28 (34)
63 PF13366.11 ; PDDEXK_3 ; PD-(D/ 25.8 2.6E+02 0.0028 16.7 3.6 30 26-56 71-103 (115)
64 PF04556.17 ; DpnII ; DpnII res 24.3 3.9E+02 0.0042 20.0 4.4 40 1-48 198-237 (289)
65 7OF0_0 39S ribosomal protein L 24.0 1.4E+02 0.0015 21.5 2.1 24 7-30 155-178 (188)
66 2Q8P_A Iron-regulated surface 23.6 1.8E+02 0.0019 19.4 2.4 44 5-48 60-104 (260)
67 PF22023.1 ; Pus10_THUMP_arc ; 23.5 1.2E+02 0.0013 17.9 1.5 11 3-13 68-78 (78)
68 6HZ4_N Protein McrC; AAA+ supe 23.4 3.6E+02 0.0038 19.5 3.9 45 5-57 242-302 (348)
69 6UT8_G McrBC 5-methylcytosine 23.3 2E+02 0.0022 22.0 2.9 37 5-48 338-375 (458)
70 8A22_Bb uS2m; mitoribosome, ri 23.0 1.3E+02 0.0014 21.1 1.7 14 1-14 165-178 (236)
71 PF18362.6 ; THB ; Tri-helix bu 22.8 20 0.00021 17.5 -1.7 15 34-48 4-18 (34)
72 PF15608.11 ; PELOTA_1 ; PELOTA 22.7 1.5E+02 0.0016 19.0 1.8 14 4-17 36-49 (81)
73 PF13101.11 ; DUF3945 ; Protein 22.5 1.4E+02 0.0015 16.7 1.5 17 30-46 20-36 (50)
74 PF11496.13 ; HDA2-3 ; Class II 22.4 1.7E+02 0.0018 19.5 2.0 13 35-47 11-23 (274)
75 5YET_A Uncharacterized protein 22.2 2.5E+02 0.0026 21.5 3.1 29 6-34 133-161 (399)
76 7EEB_H Cation channel sperm-as 22.1 76 0.00081 27.9 0.6 50 8-57 280-329 (985)
77 3R5T_A Ferric vibriobactin ABC 21.8 91 0.00097 21.5 0.8 27 5-32 86-112 (305)
78 1ZDB_A MINI PROTEIN A DOMAIN, 21.6 2E+02 0.0021 16.4 2.0 13 34-46 21-33 (38)
79 2FZL_A DNA repair protein RAD2 21.4 1.7E+02 0.0018 18.1 1.8 15 35-49 35-49 (219)
80 PF13439.11 ; Glyco_transf_4 ; 21.3 1.4E+02 0.0015 16.4 1.3 11 4-14 70-80 (166)
81 PF07832.16 ; Bse634I ; Cfr10I/ 20.9 1.1E+02 0.0012 23.7 1.1 43 6-49 133-176 (285)
82 1CFR_A RESTRICTION ENDONUCLEAS 20.8 2.1E+02 0.0022 22.1 2.6 40 6-49 133-176 (285)
83 PF09563.15 ; RE_LlaJI ; LlaJI 20.7 1.9E+02 0.0021 21.2 2.3 39 5-48 265-310 (362)
84 3LHS_A Ferrichrome ABC transpo 20.6 2.1E+02 0.0023 19.3 2.3 44 5-48 85-130 (296)
85 1ZP7_B Recombination protein U 20.6 5.1E+02 0.0054 18.4 4.2 35 6-48 87-128 (206)
86 PF18569.6 ; Thioredoxin_16 ; T 20.5 1.3E+02 0.0014 18.6 1.3 13 6-18 4-16 (92)
87 9E5C_3m Chaperone protein DNAJ 20.4 5.1E+02 0.0055 18.1 5.3 44 7-51 270-319 (319)
No 1
>PF08774.16 ; VRR_NUC ; VRR-NUC domain
Probab=98.07 E-value=2.5e-05 Score=47.14 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=38.4 Template_Neff=9.900
Q ss_pred CCcEEEEcCCCCCCC--------CCchhhEEEeeCCCCCCCHHHHHHHHHHhCCcccce
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPT--------QDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLV 55 (57)
Q Consensus 5 rPDViiV~d~~~~p~--------qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~ 55 (57)
.||++++..... +. .++--.+||||+++|.+++.|+..+..+.....++.
T Consensus 64 ~PDl~~~~~~~~-~~~~~~~~~~~~~~~~~iEvK~~~~~~s~~Q~~~~~~l~~~g~~~~ 121 (127)
T FAN1_DICDI/958 64 MPDLLLWKLNNN-NDDDIDDKNNNNSSIKFVEVKGTGDRLRDQQRIWIDMLISFGCDVE 121 (127)
T ss_pred CCcEEeEeCCCC-CCcccccccCCCceEEEEEecCCCCCCCHHHHHHHHHHHHcCCcEE
Confidence 499999987643 22 123577899999999999999999998887655443
No 2
>5Y7Q_A Fanconi-associated nuclease 1 homolog; Nuclease, HYDROLASE-DNA complex; 2.7A {Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)}
Probab=95.17 E-value=0.1 Score=40.71 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCccccee
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~ 56 (57)
||+++.+..++.. ..||||-|+|.+++.|+..-.....-.-.+.+
T Consensus 527 PDL~lw~~~~~~~------~fvEVK~p~D~Ls~~Q~~wl~~l~~~G~~~~v 571 (580)
T 5Y7Q_A 527 PDLIQFWPAQRRY------RMVEVKGPGDRLQDNQLRWLQFCREREMPVAV 571 (580)
T ss_dssp CSEEEEETTTTEE------EEEEEECTTCCCCHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEcCCCeE------EEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE
No 3
>4QBO_A Nuclease; nuclease, HYDROLASE; 1.3A {Streptococcus phage P9} SCOP: c.52.1.35, l.1.1.1
Probab=95.10 E-value=0.19 Score=29.03 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCccccee
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~ 56 (57)
||+++... ... ..||+|.+++.+++.|..--..+........+
T Consensus 33 pDl~~~~~-------~g~-~~iE~K~~~~~~~~~Q~~~~~~~~~~g~~~~v 75 (92)
T 4QBO_A 33 PDRIVVMN-------TGT-FFVEVKAPGKKPRPSQVAMHKKIKEAGQHVWV 75 (92)
T ss_dssp CSEEEEET-------TEE-EEEEECCTTCCCCHHHHHHHHHHHHHTCCEEE
T ss_pred CcEEEEec-------CCe-EEEEEeCCCCCCCHHHHHHHHHHHHCCCEEEE
No 4
>4REC_A Fanconi-associated nuclease 1; HJC, TPR, SAP, structure specific nuclease, FANCID2, nucleus, Hydrolase-DNA complex; 2.2A {Homo sapiens}
Probab=93.82 E-value=0.26 Score=38.40 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=0.0 Template_Neff=9.100
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCcccceeC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVEL 57 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~l 57 (57)
||+++.+...+ --..||||=|+|.+|+.|+..-.....-.-.+.+.
T Consensus 589 PDL~~~~~~~~------~~~fvEVK~p~D~ls~~Q~~wl~~l~~~G~~~~v~ 634 (647)
T 4REC_A 589 PALVVWNSQSR------HFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEVC 634 (647)
T ss_dssp CSEEEECTTTC------CEEEEEEECTTCCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEecCCC------eEEEEEEcCCCCCCCHHHHHHHHHHHHcCCeEEEE
No 5
>PF14281.11 ; PDDEXK_4 ; PD-(D/E)XK nuclease superfamily
Probab=93.66 E-value=0.17 Score=33.29 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=0.0 Template_Neff=9.400
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
+|+|++| -..+...-+||.|+ +-..+..|.+.|.+.+
T Consensus 72 ~riDi~i-------~~~~~~~ivIEnKi-~s~~~~~QL~~Y~~~~ 108 (192)
T Q0PC95_CAMJE/2 72 RRIDILI-------TLSDKRYIIIENKI-YAKDQKNQLKDYINFV 108 (192)
T ss_pred CceeEEE-------EeCCCEEEEEEecC-CccccchHHHHHHHHH
No 6
>4QBN_B Nuclease; Nuclease, HYDROLASE; HET: SO4; 1.85A {Salmonella phage SETP3} SCOP: c.52.1.35
Probab=93.15 E-value=0.8 Score=26.14 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=0.0 Template_Neff=10.100
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCC-CCCHHHHHHHHHHhCCccccee
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPD-KMDIKQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D-~l~~~Q~~~Y~~IAG~~~k~~~ 56 (57)
||+++..... .-..+|+|.+++ .++..|+.--..+........+
T Consensus 34 pDl~~~~~~~-------~~~~iE~K~~~~~~~~~~Q~~~~~~~~~~g~~~~v 78 (93)
T 4QBN_B 34 PDLLVILPRG-------VIWFVEVKKDENTKPDPHQLREHERFRKRGANVFV 78 (93)
T ss_dssp CSEEEEETTT-------EEEEEEECSSTTCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEEcCc-------eEEEEEEecCCCCCCCHHHHHHHHHHHHCCCEEEE
No 7
>9GY0_A Fanconi-associated nuclease 1; FAN1 R507H, PCNA, DNA BINDING PROTEIN; 3.42A {Homo sapiens}
Probab=90.65 E-value=1.2 Score=38.03 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCccccee
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~ 56 (57)
||+++.+.... --.+||||-|+|.++..|+..-.....-.-.+.+
T Consensus 963 PDL~lw~~~~~------~~~fVEVK~p~DrLs~~Q~~wl~~L~~~G~~v~V 1007 (1021)
T 9GY0_A 963 PDLVVWNSQSR------HFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEV 1007 (1021)
T ss_dssp CSEEEEETTTT------EEEEEEEECTTCCCCHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEeCCCC------eEEEEEEECCCCccCHHHHHHHHHHHHCCCeEEE
No 8
>PF20713.2 ; DUF6826 ; Domain of unknown function (DUF6826)
Probab=88.44 E-value=2.5 Score=26.85 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=0.0 Template_Neff=6.500
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEee--CC----CCCCCHHHHHHHHHH
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIK--FP----PDKMDIKQERAYIRI 47 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~K--Fp----~D~l~~~Q~~~Y~~I 47 (57)
+.||++++..... ...+|+-.|.|+| =+ -+.-..+|--+|..+
T Consensus 38 ~~PD~~f~~k~~~-~~~~~vv~igElK~~~~~~~~~~~~~~GQl~~Yl~~ 86 (94)
T A0A2Z6RAH8_9GL 38 RKPDFVILSKQDP-LDPLNVVAVGEIRVIKAQHGIFSNADIGHAVSFGEK 86 (94)
T ss_pred CCCCEEEEeCCCC-CCcceEEEEEEEeeecCcCCCCCHHHHHHHHHHHHH
No 9
>4QBL_C VRR-NUC; Nuclease, HYDROLASE; HET: MSE; 2.0A {Psychrobacter sp.} SCOP: c.52.1.35
Probab=87.48 E-value=4.5 Score=26.18 Aligned_cols=44 Identities=20% Similarity=0.081 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CcEEEEcCCCCCCCCCchh--hEEEee-CCCCCCCHHHHHHHHHHhCCccccee
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIK--QVVEIK-FPPDKMDIKQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~--~vVE~K-Fp~D~l~~~Q~~~Y~~IAG~~~k~~~ 56 (57)
||++++.. ...- ..||+| -++..+++.|+.--..+......+.+
T Consensus 69 pDl~~~~~-------~~~~~~~~iE~K~~~~~~~s~~Q~~~~~~~~~~G~~~~v 115 (145)
T 4QBL_C 69 PDLIIDIA-------RGAYHGLRIEIKKDGNSYATPAQKERIEMLAKEGYCAVV 115 (145)
T ss_dssp CSEEECCC-------BTTBSCEEEEEESSTTCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEec-------CCceeEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCeEEE
No 10
>PF01646.21 ; Herpes_UL24 ; Herpes virus proteins UL24 and UL76
Probab=85.29 E-value=1.5 Score=31.23 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=0.0 Template_Neff=5.300
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEee
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIK 30 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~K 30 (57)
||||.|++-.....+ +=-|||.|
T Consensus 58 RipDCI~l~~~~~~~----~CyiiElK 80 (174)
T UL24_HHV8P/14- 58 RIADCVILVSGGHQP----VCYVVELK 80 (174)
T ss_pred CCCCEEEEEEcCCCC----EEEEEEEe
No 11
>6OKH_B Uncharacterized protein; SSGCID, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, uncharacterized protein, UNKNOWN FUNCTION; 1.85A {Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)}
Probab=84.26 E-value=5.6 Score=25.58 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCccCCcEEEEcCC-----CCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 1 GMVRRPDVVIVNDP-----TKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 1 G~~RrPDViiV~d~-----~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
+..+.||+.++... ...........+|||..++......+.+.....+
T Consensus 81 ~~~~~PDv~v~~~~~~~~~~~~~~~~~p~lvvEvvs~~~~~~d~~~K~~~y~~ 133 (190)
T 6OKH_B 81 HNVVQPDLIFISKARNTIIREKRIEGAPDWIAEILSEGNAYHDLKTKKRLYEK 133 (190)
T ss_dssp TEEECCSEEEEEGGGGGGBCSSSEESCCSEEEEECCGGGCHCCCCCHHHHHHH
T ss_pred CCeecCCEEEEeCCcchhhhhcccccCCcEEEEecCCCchhhcHHHHHHHHHH
No 12
>PF15516.11 ; BpuSI_N ; BpuSI N-terminal domain
Probab=84.06 E-value=6.5 Score=26.27 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCC----HHHHHHHHHHh----CCc
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMD----IKQERAYIRIA----GDQ 51 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~----~~Q~~~Y~~IA----G~~ 51 (57)
.+||.++.... ..+...+||+|=++..+. ..|...|..-. +.+
T Consensus 43 ~r~D~vl~~~~-----~~~~~~vIE~K~~~~~l~~~~~~~Qa~sYa~~l~~~~~~~ 93 (152)
T A0A1L8QX79_9EN 43 LEMDYVIQNII-----TGKYLCVVEVKRTPSDIHSARYQFQAMSYVQMNANESEKP 93 (152)
T ss_pred CeecEEEEEcc-----CCeEEEEEEEeCCCCCcCChHHHHHHHHHHHHccccCCCC
No 13
>1GEF_A HOLLIDAY JUNCTION RESOLVASE; Holliday junction resolvase, HJC, HYDROLASE; HET: SO4; 2.0A {Pyrococcus furiosus} SCOP: c.52.1.18
Probab=82.90 E-value=6.1 Score=23.87 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCC---CCCHHHHHHHHHHh
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPD---KMDIKQERAYIRIA 48 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D---~l~~~Q~~~Y~~IA 48 (57)
||+++.++ |-..+||+|.... .++..|.+....+|
T Consensus 32 ~Dli~~~~--------~~~~~iEvK~~~~~~~~~~~~~~~~l~~~~ 69 (123)
T 1GEF_A 32 VDLVAGNG--------KKYLCIEVKVTKKDHLYVGKRDMGRLIEFS 69 (123)
T ss_dssp CSEEEECS--------SCEEEEEEEEESSSCEEECHHHHHHHHHHH
T ss_pred CCEEEEeC--------CeEEEEEEEEecCCceecCHHHHHHHHHHH
No 14
>3IJM_A uncharacterized restriction endonuclease-like fold superfamily protein; DUF820, Cyanobacteria, PD(D/E)xK superfamily, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG; HET: MSE, GOL; 1.7A {Spirosoma linguale}
Probab=80.55 E-value=6.8 Score=25.08 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHH
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQER 42 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~ 42 (57)
+..+.||++++..... ...-+|||-.++......+.+
T Consensus 63 ~~~~~PDi~vv~~~~~-----~p~lviEV~s~~~~~~d~~~k 99 (151)
T 3IJM_A 63 YSSPVPDVLLYDHQTE-----EAKVIIEVCQNSGLKHDTSKI 99 (151)
T ss_dssp TTSCCCSEEEEETTTT-----EEEEEEEEECGGGHHHHHHHH
T ss_pred CCccCCCEEEEeCCCC-----ceEEEEEEeccccccccHHHH
No 15
>3DNX_A uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=78.47 E-value=3.3 Score=26.92 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCC-CCCCCHHHHHHHHHHh
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFP-PDKMDIKQERAYIRIA 48 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp-~D~l~~~Q~~~Y~~IA 48 (57)
++||++..+.. ..+ ..+|+|=. .|.++..|..+|...+
T Consensus 41 ~~~Dvv~~~~~------~~i-~~vEvK~s~~d~~~~~q~~~~~~~~ 79 (153)
T 3DNX_A 41 LRVDVMGLGPK------GEI-WVIECKSSRADFQADAKWQGYLEWC 79 (153)
T ss_dssp CCEEEEEECTT------CCE-EEEEECSSHHHHHHTTTGGGGGGGC
T ss_pred CeeeEEEEcCC------CcE-EEEEEeeCHHHHHHHHhHHHHHhhC
No 16
>3OT2_B Uncharacterized protein; STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION; HET: EDO, MSE; 1.96A {Anabaena variabilis}
Probab=78.27 E-value=20 Score=22.60 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred CccCCcEEEEcCCCCCCCCCch---------hhEEEeeCCCCCCCHHHHHHHHHHhCCcccceeC
Q MBL3828645.1/1 2 MVRRPDVVIVNDPTKPPTQDNI---------KQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVEL 57 (57)
Q Consensus 2 ~~RrPDViiV~d~~~~p~qdNi---------~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~l 57 (57)
..+.||+.++..........+. .-+|||.-+++...+-..+.-...+-+-..+.+.
T Consensus 76 ~~~~PDv~v~~~~~~~~~~~~~~~~~~~~~P~lviEv~s~~~~~~d~~~K~~~Y~~~gv~~~~~i 140 (187)
T 3OT2_B 76 HSTVPDISVFIWSRIPREENGEIANIFLIAPDWTIEILSPDQSQTKVTKNILHCLKHGTQMGWLI 140 (187)
T ss_dssp EEECCSEEEEEGGGSCBCTTSSBCSCCCSCCSEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccccEEEEEcccCCccCCcchhcccccCCcEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEE
No 17
>8TI9_D Shedu protein SduA; Shedu, DUF4263, Bacterial defense systems, Nuclease, Anti-plasmid defense system, PD-(D/E)XK nuclease, Whirly domain, Two-component signaling, DNA;{Bacillus cereus B4264}
Probab=76.08 E-value=15 Score=25.37 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCC-------------------HHHHHHHHH
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMD-------------------IKQERAYIR 46 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~-------------------~~Q~~~Y~~ 46 (57)
+.-++||.+++. ..++--.|||+|-|...+- -.|-..|..
T Consensus 92 ~~~~~pDf~~~~------~~~~~~~iVEiK~p~~~l~~~~~~r~~~~~~s~~~~~ai~Qi~~y~~ 150 (229)
T 8TI9_D 92 DSGKLVDFLYAN------PFSKDAVLIAIKTPSTPLITPTEYRTGVYSAHKDLTGAVTQVLTYKT 150 (229)
T ss_dssp TTCCHHHHHHHC------TTCSSCEEEEECCTTCCCBCSSCSBTTBCCBCHHHHHHHHHHHHHHH
T ss_pred CCCceeeEEEec------CCCCeEEEEEEeCCCCCCCCCcccCCCccccCHHHHHHHHHHHHHHH
No 18
>2WCW_D HJC; TYPE II RESTRICTION ENDONUCLEASE, HYDROLASE, DNA BINDING PROTEIN, HOLLIDAY JUNCTION RESOLVASE; HET: ACT; 1.58A {ARCHAEOGLOBUS FULGIDUS} SCOP: c.52.1.0
Probab=75.83 E-value=18 Score=22.14 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=0.0 Template_Neff=10.200
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCC---CCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPD---KMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D---~l~~~Q~~~Y~~IA 48 (57)
.||++..+ ++...+||+|-... .++..|.....+.+
T Consensus 39 ~~Dii~~~--------~~~~~~iEvK~~~~~~~~~~~~~~~~l~~~~ 77 (139)
T 2WCW_D 39 CPDIVAGN--------GRTYLAIEVKMRKELPLYLSADEVEQLVTFA 77 (139)
T ss_dssp CCSEEEEC--------SSCEEEEEEEECSSSCEEECHHHHHHHHHHH
T ss_pred CCCEEEEc--------CCcEEEEEEEecCCCCeecCHHHHHHHHHHH
No 19
>1OB8_A HOLLIDAY-JUNCTION RESOLVASE; HYDROLASE, ENZYME, HOMOLOGOUS RECOMBINATION, HOLLIDAY JUNCTION RESOLVING ENZYME, NUCLEASE, ARCHAEA, THERMOPHILE; HET: SO4, EDO; 1.8A {SULFOLOBUS SOLFATARICUS} SCOP: c.52.1.18
Probab=72.77 E-value=17 Score=22.89 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCC---CCCHHHHHHHHHHhCCcc--cceeC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPD---KMDIKQERAYIRIAGDQT--KLVEL 57 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D---~l~~~Q~~~Y~~IAG~~~--k~~~l 57 (57)
||++.+.+.. .-+||+|-... .++..|.+.....|.... ...++
T Consensus 38 ~Dli~~~~~~--------~~~iEvK~~~~~~~~~~~~q~~~l~~~~~~~g~~~~~~l 86 (135)
T 1OB8_A 38 PDIFATKGNT--------LLSIECKSTWENKVKVKEHQVRKLLDFLSMFTMKGVPLI 86 (135)
T ss_dssp CSEEEEETTE--------EEEEEEEEESSSEEEECHHHHHHHHHHHHTSSSEEEEEE
T ss_pred CcEEEEeCCe--------EEEEEEEecCCCceecCHHHHHHHHHHHHHcCCCceEEE
No 20
>PF15649.11 ; Tox-REase-7 ; Restriction endonuclease fold toxin 7
Probab=72.44 E-value=11 Score=22.69 Aligned_cols=47 Identities=28% Similarity=0.252 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCCCC--CCCHHHHHHHHHHhCCcccceeC
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFPPD--KMDIKQERAYIRIAGDQTKLVEL 57 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D--~l~~~Q~~~Y~~IAG~~~k~~~l 57 (57)
+..|+||.+ ..+...|.|+|--.. .--..|.++|...|.....-..|
T Consensus 28 ~~~~iPD~~----------~~~~~~i~evKnv~~~~~~~t~Qi~~~~~~a~~~g~~~~l 76 (88)
T D5UX20_TSUPD/3 28 GGYRIPDFL----------DEPNKQLTEVKNVNAISRRDDKQITDEANWAQENGYTMTL 76 (88)
T ss_pred CceecCCcc----------cCCCCeEEEEEcccccCCCccHHHHHHHHHHHHhCCcEEE
No 21
>PF06319.17 ; MmcB-like ; DNA repair protein MmcB-like
Probab=71.16 E-value=3.7 Score=26.67 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCH-HHHHHHHHHh
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDI-KQERAYIRIA 48 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~-~Q~~~Y~~IA 48 (57)
+++|+|.++.. +.-..||||=..+++.. .|...|...+
T Consensus 42 ~~~Dvv~~~~~-------~~~~~iEiK~s~~d~~~~~q~~~y~~~~ 80 (148)
T A6WV78_BRUA4/8 42 RRADLMAVNRK-------GEIWIVEIKSSIEDWKADHKWPEYRAYC 80 (148)
T ss_pred cEEEEEEEeCC-------CcEEEEEEEecHHHHHHhhcHHHHHhhC
No 22
>1WDJ_A hypothetical protein TT1808; Structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, unknown function; 2.0A {Thermus thermophilus} SCOP: c.52.1.27
Probab=70.71 E-value=13 Score=23.44 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCccCCcEEEEcCCC---------CCCCCCchhhEEEeeCCCCCCCHHHHH
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPT---------KPPTQDNIKQVVEIKFPPDKMDIKQER 42 (57)
Q Consensus 1 G~~RrPDViiV~d~~---------~~p~qdNi~~vVE~KFp~D~l~~~Q~~ 42 (57)
+..+.||++++.... .........-+|||.-+.+...+..++
T Consensus 80 ~~~~~PDi~v~~~~~~~~~~~~~~~~~~~~~p~lvvEi~s~~~~~~d~~~K 130 (187)
T 1WDJ_A 80 GSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRAK 130 (187)
T ss_dssp SCEECCSEEEEEHHHHHTSCHHHHHSSCBSCCSEEEEECCTTSCHHHHHHH
T ss_pred CCEEcCcEEEEehhhHHhhcHHHhcCCCCCCCcEEEEeCCCCCCHHHHHHH
No 23
>PF01870.23 ; Hjc ; Archaeal holliday junction resolvase (hjc)
Probab=61.28 E-value=43 Score=18.30 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=0.0 Template_Neff=10.800
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCC---CCCHHHHHHHHHHh
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPD---KMDIKQERAYIRIA 48 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D---~l~~~Q~~~Y~~IA 48 (57)
..+|++..++ +...+||+|-..+ .++..|.....+.+
T Consensus 24 ~~~Dli~~~~--------~~~~~vevK~~~~~~~~~~~~~~~~~~~~~ 63 (87)
T HJC_METJA/10-9 24 KGVDLIAGRK--------GEVLIFECKTSSKTKFYINKEDIEKLISFS 63 (87)
T ss_pred CCCcEEEEEC--------CEEEEEEEEecCCCceecCHHHHHHHHHHH
No 24
>3S1S_A restriction endonuclease BpuSI; PD--(D/E)xk catalytic motif, gamma-N6m-adenosine methyltransferase, S-adenosyl-methionine binding, HYDROLASE, TRANSFERASE; HET: MSE, IOD, SAH, EDO; 2.35A {Bacillus pumilus}
Probab=60.79 E-value=24 Score=29.14 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=0.0 Template_Neff=9.200
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHH----HHHHHHHHhCCc--ccceeC
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIK----QERAYIRIAGDQ--TKLVEL 57 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~----Q~~~Y~~IAG~~--~k~~~l 57 (57)
++||.++....++.|. -+||.|-++-.++.. |...|..-.|.. ..+.+|
T Consensus 57 ~~~D~vl~~~~~~~~~-----~vIEaK~~~~~~~~~~~~~Qa~~Ya~~~~~~~~~~~~~l 111 (878)
T 3S1S_A 57 IEADFVIKNKQTKKYL-----LIVEVKRTKSQVSSTRYRLQAQSYVREANIKVEQHYYCL 111 (878)
T ss_dssp EEEEEEEEETTTCCEE-----EEEEECSSHHHHTCHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred ceeeEEEEECCCCcEE-----EEEEEecChhhhcChhHHHHHHHHHHHcccccCccEEEE
No 25
>PF05685.17 ; Uma2 ; Putative restriction endonuclease
Probab=60.10 E-value=54 Score=21.51 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCccCCcEEEEcCC-----CCC--CCCCchhhEEEeeCCCCCCCHHHHHHHHHHhC
Q MBL3828645.1/1 1 GMVRRPDVVIVNDP-----TKP--PTQDNIKQVVEIKFPPDKMDIKQERAYIRIAG 49 (57)
Q Consensus 1 G~~RrPDViiV~d~-----~~~--p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG 49 (57)
...+.||+.++... ... .....-.-+|||.-+.+...-..+...-..+|
T Consensus 69 ~~~~~PDi~v~~~~~~~~~~~~~~~~~~~p~lvvEv~s~~~~~~~~~k~~~Y~~~g 124 (185)
T P73158_SYNY3/4 69 FHGRIPDVSVIDRHVWRSDPGDYRALTEPVQLAVEVVSSNWETDYFDKLDEYQRLG 124 (185)
T ss_pred CceeeCcEEEEchhHccCCCCcccccCCCCcEEEEEecCCchhhHHHHHHHHHHcC
No 26
>8GLV_Jo Radial spoke protein 16; cilia, microtubule, dynein, MOTOR PROTEIN; HET: GTP, MG, GDP; 3.1A {Chlamydomonas reinhardtii}
Probab=56.42 E-value=79 Score=22.99 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=0.0 Template_Neff=9.500
Q ss_pred CCcEEEEcCCCCCC------CCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCccc
Q MBL3828645.1/1 5 RPDVVIVNDPTKPP------TQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTK 53 (57)
Q Consensus 5 rPDViiV~d~~~~p------~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k 53 (57)
.|.-.++-...+.| ...||---++|+||. .+++.|++...+++.....
T Consensus 262 ~~~~~~~i~g~G~p~~~~~~~rGdL~v~~~v~~P~-~l~~~~~~~l~~~~~~~~~ 315 (346)
T 8GLV_Jo 262 RPGSSLTVPGEGMPLPATPSARGNLVIEIDLLFPT-HLTETQKMLLRSAFFLPPP 315 (346)
T ss_pred cCCCeEEeCCCcCCCCCCCCCCCcEEEEEEEEcCC-CCCHHHHHHHHHHcCCCCC
No 27
>PF14082.11 ; SduA_C ; Shedu protein SduA, C-terminal
Probab=56.25 E-value=24 Score=23.01 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCC
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKM 36 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l 36 (57)
|.||.++.. ++--.+||+|-|...+
T Consensus 43 ~~pDf~~~~--------~~~~~ivElK~p~~~l 67 (170)
T Q0APR0_MARMM/2 43 PVVDFLMTF--------TDYTALVEIKKPSTPI 67 (170)
T ss_pred cccceEEee--------CCceEEEEeCCCCCcc
No 28
>3LZ8_B Putative chaperone DnaJ; STRUCTURE GENOMICS, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Chaperone; 2.9A {Klebsiella pneumoniae subsp. pneumoniae}
Probab=53.77 E-value=84 Score=22.36 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCcEEEEcCCCCCCC---CCchhhEEEeeCCCCCCCHHHHHHHHHHhCCcc
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPT---QDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQT 52 (57)
Q Consensus 5 rPDViiV~d~~~~p~---qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~ 52 (57)
.|.-.++-...+.|. ..||---+.|+||.. ++.+|++..++|++.+.
T Consensus 269 ~~~~~~~~~g~G~p~~~~rGdL~v~~~v~~P~~-~~~~~~~~l~~~~~~~~ 318 (329)
T 3LZ8_B 269 QAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPTK-PDEKARELWQQLAAAEA 318 (329)
T ss_dssp CTTCEEEEEEEEEEC--CEEEEEEEEEECCCSS-CCHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEcCCCCCcCCCCccEEEEEEEEcCCC-CCHHHHHHHHHHHHhhc
No 29
>PF04411.17 ; PDDEXK_7 ; PD-(D/E)XK nuclease superfamily
Probab=53.17 E-value=48 Score=21.37 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCC---------HHHHHHHHH
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMD---------IKQERAYIR 46 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~---------~~Q~~~Y~~ 46 (57)
+.-++||++|.....+.+. .--+++.||..+.-. -.|..+|..
T Consensus 70 ~~~~~PDi~i~~~~~~~~~---~~~vlDaKy~~~~~~~~~~~~~~~~~~l~~Y~~ 121 (149)
T Q3ABD9_CARHZ/3 70 TSDQKPDTVLCLNKKGKIN---RMYIFDAKYRVEINNEEIGPLEEDINAMHRYRD 121 (149)
T ss_pred CcCCCCcEEEEEEECCeEE---EEEEEeeccccccCCCCCCCCHHHHHHHHHHHH
No 30
>PF18743.6 ; AHJR-like ; REase_AHJR-like
Probab=52.96 E-value=84 Score=19.08 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=0.0 Template_Neff=9.800
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCccccee
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~ 56 (57)
||+|.+ .++...+||+|-.....+..|.....+.+........
T Consensus 45 ~Dli~~--------~~~~~v~vEvK~~~~~~~~~~l~~~~~~~~~~~~~~~ 87 (123)
T A0A252DYT9_9NO 45 LDMIAI--------CDHENVVVEVKSKPTLTKSSYLTALAKAVNNQPGWRF 87 (123)
T ss_pred ccEEEE--------cCCceEEEEEEcCCcccchHHHHHHHHHHhCCCCcEE
No 31
>8TI8_C Shedu protein SduA; Shedu, DUF4263, Bacterial defense systems, Nuclease, Anti-plasmid defense system, PD-(D/E)XK nuclease, Whirly domain, Two-component signaling, DNA;{Bacillus cereus B4264}
Probab=52.89 E-value=68 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=0.0 Template_Neff=8.700
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCC-------------------HHHHHHHHHHh
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMD-------------------IKQERAYIRIA 48 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~-------------------~~Q~~~Y~~IA 48 (57)
.+||.++.+. .++--.|||||-|...+- -.|-..|....
T Consensus 248 ~~~Dfl~~~~------~~~~~~lVEIK~P~~~l~~~~~~r~~~~~~s~~l~~ai~Qv~~Y~~~l 305 (382)
T 8TI8_C 248 KLVDFLYANP------FSKDAVLIEIKTPSTPLITPTEYRTGVYSAHKDLTGAVTQVLTYKTTL 305 (382)
T ss_dssp CHHHHHHTCS------SCSCCEEEECCCTTCCCBCSSCSBTTBCCBCHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEEcC------CCCcEEEEEecCCCCCcCCCCCCCCCccccCHHHHHHHHHHHHHHHHH
No 32
>PF10847.13 ; DUF2656 ; Protein of unknown function (DUF2656)
Probab=50.55 E-value=30 Score=24.63 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred EEEeeCCCCCCCHHH
Q MBL3828645.1/1 26 VVEIKFPPDKMDIKQ 40 (57)
Q Consensus 26 vVE~KFp~D~l~~~Q 40 (57)
+|||-|+.+.+++.|
T Consensus 49 ~veI~f~~~~~sP~~ 63 (141)
T U5QL37_9CYAN/9 49 LVEVLFAADTHPPAR 63 (141)
T ss_pred EEEEEeccCCCCHHH
No 33
>PF18742.6 ; DpnII-MboI ; REase_DpnII-MboI
Probab=50.17 E-value=40 Score=22.43 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CchhhEEEeeCCCC--CCCHHHHHHHHHHhC
Q MBL3828645.1/1 21 DNIKQVVEIKFPPD--KMDIKQERAYIRIAG 49 (57)
Q Consensus 21 dNi~~vVE~KFp~D--~l~~~Q~~~Y~~IAG 49 (57)
+++..+||+||..+ .++..+.+-+..|.+
T Consensus 71 ~~~~~~IEvK~~~~~~~~~~~~~qi~~D~~~ 101 (148)
T D8PIY8_9BACT/1 71 KEEGIVVELKKTRRSLDTKAIGDQLLIDIGR 101 (148)
T ss_pred CccCEEEEEEEcCCCCChhHHHHHHHHHHHH
No 34
>PF19986.4 ; DUF6422 ; Family of unknown function (DUF6422)
Probab=47.06 E-value=42 Score=22.19 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred CCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 32 PPDKMDIKQERAYIRIA 48 (57)
Q Consensus 32 p~D~l~~~Q~~~Y~~IA 48 (57)
+.+.|+++|++++++-|
T Consensus 3 ~~~~LTd~Q~kAl~eaa 19 (94)
T A0A1G9A3Y1_9AC 3 TYQDLTAKQKSALESAA 19 (94)
T ss_pred CcccCCHHHHHHHHHHH
No 35
>6JZB_A Chaperone protein DnaJ; cochaperone activity, zinc finger, tetramer, STRUCTURAL PROTEIN; 2.754A {Streptococcus pneumoniae}
Probab=43.46 E-value=1.6e+02 Score=21.66 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CCcEEEEcCCCCCCCC-----CchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQ-----DNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~q-----dNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
.|.-+++-...+.|.. .||---+.|.|| +.+++.|++..++++
T Consensus 313 ~~g~~~~i~g~G~p~~~~~~~GdL~v~~~v~~p-~~~~~~~~~~l~~~~ 360 (385)
T 6JZB_A 313 QTGKKFRLRSKGAPSLRGGAVGDQYVTVNVVTP-TGLNDRQKVALKEFA 360 (385)
T ss_dssp CTTCEEEETTCSCCCTTSCCCCCEEEEEEEECC-CSCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCccEEEEEEEEcC-CCCCHHHHHHHHHHH
No 36
>PF10069.14 ; DICT ; Sensory domain in DIguanylate Cyclases and Two-component system
Probab=43.39 E-value=49 Score=20.60 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred eeCCCCCCCHHHHHHHHHHhCCcccceeC
Q MBL3828645.1/1 29 IKFPPDKMDIKQERAYIRIAGDQTKLVEL 57 (57)
Q Consensus 29 ~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~l 57 (57)
.+|+....-..+.+.|.++|.....+.++
T Consensus 46 ~~~~~~~~~~~~~~ry~~la~~~~~v~v~ 74 (121)
T K9U4U9_CHRTP/6 46 ASFQRERFYRQEAHRYKRLARQTNQVYVL 74 (121)
T ss_pred EecCChhhhhHHHHHHHHHHhhCCeEEEE
No 37
>PF10117.14 ; McrBC ; McrBC 5-methylcytosine restriction system component
Probab=42.07 E-value=70 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCCC------CHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKM------DIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l------~~~Q~~~Y~~IA 48 (57)
+||+|+.++ +...|++.|+-.-.. ......-|+.+|
T Consensus 262 ~PDivi~~~--------~~~~I~DAKYk~~~~~~~~~~~~~~~DiyQ~~~ 303 (318)
T Q6LZ73_METMP/6 262 KPDIYAETS--------SKKYIMDAKWKILNSDKNKNYGISQNDMYQLLS 303 (318)
T ss_pred cCeEEEEeC--------CcEEEEEccccccCCccccCCCCCHHHHHHHHH
No 38
>PF20472.3 ; PDDEXK_11 ; PD-(D/E)XK nuclease superfamily domain
Probab=41.72 E-value=1.1e+02 Score=20.74 Aligned_cols=41 Identities=10% Similarity=0.323 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHH
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRI 47 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~I 47 (57)
|.-++||.+|... ..+-.-+||.||-...=|.+++-.|.-+
T Consensus 53 g~~~~~Df~i~~~------~~~~~~iIE~K~Q~~~GSvdEKlp~~~~ 93 (155)
T A0A418LY79_9BA 53 GHQGKTEFLLQSE------EYGLQIRIECKWQQSSGSVDEKFPYLYL 93 (155)
T ss_pred CCCCceeEEEEeC------CcCCeEEEEEEEEecCCChhHHHHHHHH
No 39
>1KNV_A Bse634I restriction endonuclease; Restriction endonuclease, apo-enzyme, HYDROLASE; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7
Probab=40.73 E-value=1.1e+02 Score=23.74 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=0.0 Template_Neff=5.800
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHH----HHHHHhC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQER----AYIRIAG 49 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~----~Y~~IAG 49 (57)
||.|||.-+......+.. +-..++..... +|..+.|
T Consensus 145 PD~Viv~~~~~~~~~~~~--------~i~~l~~~~l~~L~~~y~~l~G 184 (293)
T 1KNV_A 145 PDLLIIRQKDLIKSEYNL--------PINKLTHENIDVALTLFKDIEG 184 (293)
T ss_dssp CSEEEEECGGGCCGGGGS--------CCCSCCHHHHHHHHTHHHHHTT
T ss_pred CCEEEEEcccccccccCC--------CcccCCHHHHHHHHHHHHHHcc
No 40
>PF03838.19 ; RecU ; Recombination protein U
Probab=40.64 E-value=1.3e+02 Score=20.17 Aligned_cols=44 Identities=7% Similarity=-0.087 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCC------CCHHHHHHHHHHhCCcccceeC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDK------MDIKQERAYIRIAGDQTKLVEL 57 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~------l~~~Q~~~Y~~IAG~~~k~~~l 57 (57)
||++.+.+.... .+|+|-.... +++.|.+.-.+++.......++
T Consensus 54 ~D~~~~~~g~~~--------~iE~K~~~~~~~~~~~i~~~Q~~~l~~~~~~g~~~~v~ 103 (161)
T R5YL25_9FIRM/1 54 VDYIGAVQGIPV--------CFDAKECATDTFPMMNIHEHQVKFMKDFEKQGGVSFII 103 (161)
T ss_pred CCEEEEECCEEE--------EEEccccCCCccChhhCcHHHHHHHHHHHHCCCeEEEE
No 41
>8PS4_A Shedu effector protein; SduA, Shedu, Prokaryotic immune system, IMMUNE SYSTEM; 2.95A {Escherichia coli KTE10}
Probab=40.45 E-value=1.2e+02 Score=23.78 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCC-CCCCC------------------HHHHHHHHH
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFP-PDKMD------------------IKQERAYIR 46 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp-~D~l~------------------~~Q~~~Y~~ 46 (57)
+.-|+||.+++.. ++--.|||+|=| +..+- -.|-+.|..
T Consensus 266 ~~~~~~Dfll~~~-------~g~~~iIEIK~P~~~~l~~~~~yR~~~~ps~els~ai~Qv~~Y~~ 323 (411)
T 8PS4_A 266 KTNRFIDIALVDA-------NGNLDIIEVKKPFDDKILRKTPYRDNYIPTSELSGGIMQAEKYIF 323 (411)
T ss_dssp CEEEEEEEEEEET-------TCBEEEEEECCCCTTSSSCSSCBTTBCCCCHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEcC-------CCCEEEEEEcCcCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHH
No 42
>5XKT_A Urease accessory protein UreG; SIMIBI Class GTPase, HYDROLASE; HET: GNP; 1.8A {Klebsiella pneumoniae subsp. rhinoscleromatis SB3432}
Probab=36.19 E-value=66 Score=19.85 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=0.0 Template_Neff=11.700
Q ss_pred CCccCCcEEEEcCCCCCCC-CCchhhE
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPT-QDNIKQV 26 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~-qdNi~~v 26 (57)
+.++.||+++++..+..+. ..+++.+
T Consensus 136 ~~~~~~~iivl~k~d~~~~~~~~~~~~ 162 (200)
T 5XKT_A 136 PGITRSDFLVINKTDLAPYVGASLKVM 162 (200)
T ss_dssp HHHHHSSEEEEECGGGHHHHTCCHHHH
T ss_pred CcccccCEEEEECcccccccCCCHHHH
No 43
>PF08011.16 ; PDDEXK_9 ; PD-(D/E)XK nuclease superfamily
Probab=35.65 E-value=1.4e+02 Score=16.70 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHH
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRI 47 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~I 47 (57)
+.|+++. ..+-.-++|+|+..+. ..-.++..+|
T Consensus 31 ~~di~i~--------~~~~~~iiE~K~~~~~--~~~~~a~~Qi 63 (96)
T Q2FP75_METHJ/4 31 RIDLTVK--------TRTGIWIFEFKVSDIP--PENTSALEQI 63 (96)
T ss_pred eecEEEE--------cCCEEEEEEEEecCCC--cchhHHHHHH
No 44
>PF02078.21 ; Synapsin ; Synapsin, N-terminal domain
Probab=35.14 E-value=1.3e+02 Score=19.19 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCC
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPP 33 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~ 33 (57)
+||-|++......+.++-...|+-+.|.+
T Consensus 71 ~PDfVLiRq~~~~~~~d~rnil~GL~~ag 99 (102)
T E9G692_DAPPU/1 71 RPDFVLIRQNMRDAGEDYKSIVLGLKFGG 99 (102)
T ss_pred CCcEEEEeccccCCCCCchhhcceeecCC
No 45
>7VSR_M Protein McrC; AAA+ protein, GTPase, endonuclease, McrBC, stalkless mutant, DNA BINDING PROTEIN; HET: GNP;{Escherichia coli (strain K12)}
Probab=34.94 E-value=84 Score=22.41 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCC-------CCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPP-------DKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~-------D~l~~~Q~~~Y~~IA 48 (57)
+||+++-.. +...|++.||-. +.....+..-|+-+|
T Consensus 204 ~PDi~i~~~--------~~~~ViDaKYK~~~~~~~~~~~~~~~~D~yQ~~a 246 (310)
T 7VSR_M 204 ETDITIRSS--------EKILIVDAKYYKSIFSRRMGTEKFHSQNLYQLMN 246 (310)
T ss_dssp ECSEEEECS--------SCEEEEEECCCHHHHCC----CCCCCTHHHHHHH
T ss_pred cccEEEEeC--------CeEEEEEeeeChhHHHhhcCCccccCchHHHHHH
No 46
>PF08722.16 ; Tn7_TnsA-like_N ; TnsA-like endonuclease N terminal
Probab=33.72 E-value=1.3e+02 Score=15.60 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=0.0 Template_Neff=11.300
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
.||+++....... ++|+|-..+..+...+..+..+.
T Consensus 26 ~pD~~v~~~~g~~--------~~~vk~~~~~~~~~~~~~~~~~~ 61 (76)
T A6T2H6_JANMA/6 26 FPDLFVVGNGRAA--------FIEVKSHTDPDLCEAIERGDAIR 61 (76)
T ss_pred cccEEEEEcCCcE--------EEEEccCCCcchHHHHHHHHHHH
No 47
>PF21420.2 ; Tautomerase-like ; Tautomerase-like
Probab=33.18 E-value=1.6e+02 Score=17.61 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=0.0 Template_Neff=2.700
Q ss_pred EEEeeCCCCC-CCHHHHHHHHHHh
Q MBL3828645.1/1 26 VVEIKFPPDK-MDIKQERAYIRIA 48 (57)
Q Consensus 26 vVE~KFp~D~-l~~~Q~~~Y~~IA 48 (57)
++||=..+|. ++.+|++++.+=|
T Consensus 2 MlEVl~~~e~pl~~e~krAfa~eA 25 (45)
T A9W9V0_CHLAA/2 2 MLEVFYSGDRPPDRTRKQAFAAEA 25 (45)
T ss_pred ceEEEEcCCCCCCHHHHHHHHHHH
No 48
>9IAB_A PD-(D/E)XK endonuclease-like domain-containing protein; Cas4 family protein, IMMUNE SYSTEM, deoxyribonuclease, hydrolase; HET: MES, SF4, SO4; 1.57A {Chroococcidiopsis thermalis}
Probab=32.77 E-value=1.6e+02 Score=18.42 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
++|.|+.. .++--.+|+.|......+..|...|...+
T Consensus 147 ~iD~v~~~-------~~~~~~iiD~Kt~~~~~~~~Ql~~Y~~~~ 183 (273)
T 9IAB_A 147 AMDCVLQE-------EDGTLHIVDFKTGKSDFDRRQAYIYLLAA 183 (273)
T ss_dssp CCSEEEEC-------TTSCEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred EeeEEEEc-------CCCeEEEEECCCCCCchhHHHHHHHHHHH
No 49
>PF20452.3 ; Calmod_bind_C ; Calmodulin binding protein C-terminal domain
Probab=32.50 E-value=1.5e+02 Score=16.15 Aligned_cols=28 Identities=7% Similarity=0.228 Sum_probs=0.0 Template_Neff=8.800
Q ss_pred CchhhEEEeeCCC-----CCCCHHHHHHHHHHh
Q MBL3828645.1/1 21 DNIKQVVEIKFPP-----DKMDIKQERAYIRIA 48 (57)
Q Consensus 21 dNi~~vVE~KFp~-----D~l~~~Q~~~Y~~IA 48 (57)
+++-.|+.++|.+ |.|++.|+..-.+..
T Consensus 15 n~v~~v~~~~~~g~~~~~~~l~~~qk~~v~~l~ 47 (60)
T A0A3B6PHL1_WHE 15 SPIGEILAARIGDQTCSLQQLHQEHKAQVNQLA 47 (60)
T ss_pred CCCceEEEEEECCEEcCHHhCCHHHHHHHHHHH
No 50
>6JC3_A Nucleocapsid; self-capping helical structure complex, NUCLEAR PROTEIN, NUCLEAR PROTEIN-RNA complex; 4.8A {Avian avulavirus 1}
Probab=31.74 E-value=2e+02 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=0.0 Template_Neff=5.000
Q ss_pred cCCcEEEEcCCCCCCCCCchhhEEEe--------eC-CCCCCCHHHHHHHHHHhCC
Q MBL3828645.1/1 4 RRPDVVIVNDPTKPPTQDNIKQVVEI--------KF-PPDKMDIKQERAYIRIAGD 50 (57)
Q Consensus 4 RrPDViiV~d~~~~p~qdNi~~vVE~--------KF-p~D~l~~~Q~~~Y~~IAG~ 50 (57)
+.||+.|. +||| +| +....++.+.++|..||++
T Consensus 93 ~~pd~~i~--------------ivei~~~~~~~~~~~~R~~~~~~~~~~~~~~a~~ 134 (398)
T 6JC3_A 93 KQNEATLA--------------VLEIDGFTNGVPQFNNRSGVSEERAQRFMMIAGS 134 (398)
T ss_dssp TCTTSCBC--------------CCBCCCCCSSSSCCCCCSSCCTTHHHHHHHHHTC
T ss_pred cCCCcEEE--------------EEEEecCCCCceEEecCCCChHHHHHHHHHHHhc
No 51
>4TKD_D Holliday junction resolvase Hjc; HYDROLASE; 2.01A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=31.46 E-value=2.3e+02 Score=17.80 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCC---CCHHHHHHHHHHh
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDK---MDIKQERAYIRIA 48 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~---l~~~Q~~~Y~~IA 48 (57)
||+|..++. ...+||+|-.... ++..|.....+.|
T Consensus 41 ~Dii~~~~~--------~~~~iEvK~~~~~~~~~~~~~~~~l~~~~ 78 (141)
T 4TKD_D 41 PDIIALKNG--------VIILIEMKSRKDGKIYVRREQAEGIIEFA 78 (141)
T ss_dssp CSEEEEETT--------EEEEEEEEECSSSEEEECHHHHHHHHHHH
T ss_pred CCEEEEECC--------EEEEEEEEeeCCCceeecHHHHHHHHHHH
No 52
>9IAC_A Similar to tr|Q3MCC8|Q3MCC8_ANAVT Hypothetical protein; Cas4 family protein, IMMUNE SYSTEM, deoxyribonuclease, hydrolase; HET: EDO, SF4; 2.52A {Microcystis aeruginosa}
Probab=31.42 E-value=2.2e+02 Score=17.82 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=0.0 Template_Neff=12.800
Q ss_pred CCcEEEEc-CCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVN-DPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~-d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
++|.|+.. +.. -.+|+.|......+..|...|...+
T Consensus 153 ~iD~i~~~~~~~--------~~ivD~Kt~~~~~~~~Ql~~Y~~~~ 189 (277)
T 9IAC_A 153 AFDCIFREADDT--------IHILDLKTGQSNFDRRQAHVYLLAA 189 (277)
T ss_dssp CCSEEEECTTSC--------EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred EeeEEEEeCCCe--------EEEEEeecCCCChhHHHHHHHHHHH
No 53
>PF21192.2 ; NMD3_OB ; NMD3 OB-fold domain
Probab=31.03 E-value=65 Score=19.92 Aligned_cols=9 Identities=44% Similarity=0.811 Sum_probs=0.0 Template_Neff=7.400
Q ss_pred cCCcEEEEc
Q MBL3828645.1/1 4 RRPDVVIVN 12 (57)
Q Consensus 4 RrPDViiV~ 12 (57)
+.||||+|+
T Consensus 80 ~~pdvilVk 88 (89)
T S3CVJ6_OPHP1/3 80 TVPEVVLVK 88 (89)
T ss_pred CCCcEEEEe
No 54
>3K93_A phage related exonuclease; phage related exonuclease, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE; HET: PEG, MSE; 2.15A {Haemophilus somnus 129PT}
Probab=30.14 E-value=2.8e+02 Score=18.82 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCH-----------------HHHHHHHHHhC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDI-----------------KQERAYIRIAG 49 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~-----------------~Q~~~Y~~IAG 49 (57)
|| +++..... ++|+|.+.+...- .|-..|.-++|
T Consensus 99 pD-~~~~~~~~---------ivEiK~~~~~~~~~~~~~~~~~~~~~~~y~~Q~q~qm~vtg 149 (223)
T 3K93_A 99 CD-IYVPSRKL---------IIDTKCSWDIGSHPFFTDEAQEKAKKAGYDIQMQGYMWLWD 149 (223)
T ss_dssp CS-EEEGGGTE---------EEEEEECSSTTTSCCSHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cc-EEEcCCCe---------EEEEeCCCccccCcccchhHHHHhhcCCchHHHHHHHHHhC
No 55
>5JOQ_A Lmo2184 protein; CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES; HET: CIT; 1.99A {Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)}
Probab=30.09 E-value=1.2e+02 Score=20.53 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=0.0 Template_Neff=11.000
Q ss_pred CCcEEEEcCCCCCCCCCchhhE-EEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQV-VEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~v-VE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
.||+||..........+.++.. +.+-.-+..--....+.++.||
T Consensus 90 ~PDlIi~~~~~~~~~~~~L~~~~i~v~~~~~~~~~~~~~~~~~lg 134 (290)
T 5JOQ_A 90 KPDMVLSTKTLEADLKSGFEGADLEADFLDFTSIASMQTEIKNLG 134 (290)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHH
T ss_pred CCCEEEecccccHHHHhccccCCCeEEEecCCCHHHHHHHHHHHH
No 56
>PF05961.16 ; Chordopox_A13L ; Chordopoxvirus A13L protein
Probab=29.45 E-value=1.3e+02 Score=19.09 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=0.0 Template_Neff=4.300
Q ss_pred cCCCCCCCCCchhhEEEee---CCCCCCCHHHHHHHHH
Q MBL3828645.1/1 12 NDPTKPPTQDNIKQVVEIK---FPPDKMDIKQERAYIR 46 (57)
Q Consensus 12 ~d~~~~p~qdNi~~vVE~K---Fp~D~l~~~Q~~~Y~~ 46 (57)
..+..+|..++...-.|.+ | .|.|+++|-++.-+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~f-vD~L~~dhi~s~yr 64 (68)
T PG139_VACCW/1- 28 NSQNPNPSPNLNSPPPEPKNTKF-VNNLEKDHISSLYN 64 (68)
T ss_pred CCCCCCCCCCCCCCCCCCCCCcc-cccCCHHHHHHHHH
No 57
>3SXU_A DNA polymerase III subunit chi; DNA replication, Chi binds to SSB and Psi, TRANSFERASE; 1.85A {Escherichia coli} SCOP: c.128.1.1
Probab=28.81 E-value=1.2e+02 Score=20.14 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHH
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIR 46 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~ 46 (57)
.+|++|..++.-++...+..+++|+=-..+..-..-|+-|+.
T Consensus 95 ~~~~linl~~~~~~~~~~f~ri~eiv~~~~~~~~~aR~r~k~ 136 (150)
T 3SXU_A 95 RRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKA 136 (150)
T ss_dssp CCSEEEECCSSCCGGGGGCSEEEEEECSSGGGHHHHHHHHHH
T ss_pred cCCEEEECCcccchhhhhCCEEEEecCCCHHHHHHHHHHHHH
No 58
>2X4L_A FERRIC-SIDEROPHORE RECEPTOR PROTEIN; TRANSPORT; 1.5A {STREPTOMYCES COELICOLOR}
Probab=28.39 E-value=1e+02 Score=21.61 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=0.0 Template_Neff=10.400
Q ss_pred CCcEEEEcCCC--------CCCCCCchhhEEEeeCCCC--CCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPT--------KPPTQDNIKQVVEIKFPPD--KMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~--------~~p~qdNi~~vVE~KFp~D--~l~~~Q~~~Y~~IA 48 (57)
.||+||+.... ......-|+.++.+-.-.. .--+.-.+.+..||
T Consensus 110 ~PDlIi~~~~~~~~~~~~~~~~~~~~L~~~~pvv~~~~~~~~~~~~~~~~~~lg 163 (325)
T 2X4L_A 110 APEVLITTTFDTAGTLWSVPEESKDKVAKLAPSVAISVFDRQLTQPLQRMWELA 163 (325)
T ss_dssp CCSEEEEEECSTTCCCTTSCGGGHHHHHHHSCEEEEECSSSCTHHHHHHHHHHH
T ss_pred CCCEEEEcccCCCCcccCCChHHHHHHHHhCCEEEeecCccccHHHHHHHHHHH
No 59
>PF18891.5 ; FANCL_d3 ; FANCL UBC-like domain 3
Probab=27.66 E-value=34 Score=21.59 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred chhhEEEe-eCCC
Q MBL3828645.1/1 22 NIKQVVEI-KFPP 33 (57)
Q Consensus 22 Ni~~vVE~-KFp~ 33 (57)
||+.|.|+ +||.
T Consensus 85 NL~~lL~~~~fP~ 97 (98)
T D2A687_TRICA/1 85 ELLKILSLEKFPQ 97 (98)
T ss_pred HHHHHhCCccCCC
No 60
>6IY6_I Aminoacyl tRNA synthase complex-interacting multifunctional protein 2; Aminoacyl-tRNA transferase Glutathion-S transferase domain, TRANSLATION; HET: PO4; 3.6A {Homo sapiens}
Probab=27.44 E-value=99 Score=20.08 Aligned_cols=12 Identities=50% Similarity=1.066 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred cEEEEcCCCCCC
Q MBL3828645.1/1 7 DVVIVNDPTKPP 18 (57)
Q Consensus 7 DViiV~d~~~~p 18 (57)
|+||..||+.||
T Consensus 8 ~~vi~~~p~~pP 19 (215)
T 6IY6_I 8 DIVINANPASPP 19 (215)
T ss_dssp EEEEEECTTSCC
T ss_pred eEEEEcCCCCCC
No 61
>6ALL_A Fe(3+)-citrate-binding protein yfmC; structural genomics, NIAID, national institute of allergy and infectious diseases, PERIPLASMIC LIGAND BINDING PROTEIN, SUBSTRATE BINDING; HET: PE3; 2.47A {Bacillus anthracis str. 'Ames Ancestor'}
Probab=26.33 E-value=1.1e+02 Score=20.95 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=0.0 Template_Neff=11.100
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCCC-----CHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKM-----DIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l-----~~~Q~~~Y~~IA 48 (57)
+||+|+..........+.++.++.+=+-.... -+...+..+.|+
T Consensus 114 ~PDlIi~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~lg 162 (324)
T 6ALL_A 114 KPDLIITASFRGKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQIA 162 (324)
T ss_dssp CCSEEEEEHHHHTTTHHHHHTTSCEEEECTTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEecCcccHHHHHHHhhhCCEEEeCCCCCCcchHHHHHHHHHHHH
No 62
>1L6X_B Minimized B-domain of Protein A Z34C; IgG1 fc, protein A, fc complex, b-domain, IMMUNE SYSTEM; HET: BMA, MAN, GAL, FUL, NAG; 1.65A {Homo sapiens} SCOP: k.13.1.1
Probab=26.21 E-value=1.5e+02 Score=16.43 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=0.0 Template_Neff=4.200
Q ss_pred CCCCHHHHHHHHH
Q MBL3828645.1/1 34 DKMDIKQERAYIR 46 (57)
Q Consensus 34 D~l~~~Q~~~Y~~ 46 (57)
..|++.|+.+|..
T Consensus 16 pnLn~~Qr~~fI~ 28 (34)
T 1L6X_B 16 PNLNEEQRNAKIK 28 (34)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
No 63
>PF13366.11 ; PDDEXK_3 ; PD-(D/E)XK nuclease superfamily
Probab=25.75 E-value=2.6e+02 Score=16.67 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=0.0 Template_Neff=9.900
Q ss_pred EEEeeCCCCCCCH---HHHHHHHHHhCCccccee
Q MBL3828645.1/1 26 VVEIKFPPDKMDI---KQERAYIRIAGDQTKLVE 56 (57)
Q Consensus 26 vVE~KFp~D~l~~---~Q~~~Y~~IAG~~~k~~~ 56 (57)
+||+|-. +.+++ .|-..|.+.+|-+.-+.+
T Consensus 71 ivevk~~-~~~~~~~~~ql~~yl~~~~~~~G~li 103 (115)
T B3E6N8_TRIL1/4 71 ILELKAV-KSLLPEHQAQLLNYLKASGLPVGLLI 103 (115)
T ss_pred EEEEEeh-hcCCHHHHHHHHHHHHHhCCCEEEEE
No 64
>PF04556.17 ; DpnII ; DpnII restriction endonuclease
Probab=24.33 E-value=3.9e+02 Score=19.98 Aligned_cols=40 Identities=20% Similarity=0.075 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCccCCcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 1 GMVRRPDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 1 G~~RrPDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
|.-|++|.||.+ .+-.-+||+||-..+=|..++.++.-+.
T Consensus 198 ~~~k~~DfvI~~--------~~~~i~IE~n~~~t~GSk~~~~~~~~~~ 237 (289)
T D6ZH53_MOBCV/3 198 KSSKRFDFVVCT--------DTTIFGIETNFYGSGGSKLNETARSYKQ 237 (289)
T ss_pred CCCCceeEEEec--------CCeEEEEEEeeccCCCcHHHHHHHHHHH
No 65
>7OF0_0 39S ribosomal protein L32, mitochondrial; Mitochondria, Ribosome, Biogenesis, GTPase, NSUN4, MTERF4; HET: MG; 2.2A {Homo sapiens}
Probab=23.96 E-value=1.4e+02 Score=21.48 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=0.0 Template_Neff=6.400
Q ss_pred cEEEEcCCCCCCCCCchhhEEEee
Q MBL3828645.1/1 7 DVVIVNDPTKPPTQDNIKQVVEIK 30 (57)
Q Consensus 7 DViiV~d~~~~p~qdNi~~vVE~K 30 (57)
||+++-..+......+=+++|||+
T Consensus 155 ev~v~Y~~e~~~~~~~~k~ive~~ 178 (188)
T 7OF0_0 155 ETVVLYTGETPSEQDQGKRIIERD 178 (188)
T ss_dssp CEEEECTTCCCCSTTTTSEEEECS
T ss_pred cEEEeeCCCCCchhcCCcEEEeeC
No 66
>2Q8P_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, METAL TRANSPORT; HET: HEM, MSE; 1.95A {Staphylococcus aureus subsp. aureus}
Probab=23.59 E-value=1.8e+02 Score=19.41 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=0.0 Template_Neff=10.900
Q ss_pred CCcEEEEcCCCCCCCCCchhhE-EEeeCCCCCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQV-VEIKFPPDKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~v-VE~KFp~D~l~~~Q~~~Y~~IA 48 (57)
.||+||+......-..+.|+.. +.+-+-...--+...+..+.++
T Consensus 60 ~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg 104 (260)
T 2Q8P_A 60 KPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLG 104 (260)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHH
T ss_pred CCCEEEeccccchhhHHHHHHCCCeEEEeccccHHHHHHHHHHHH
No 67
>PF22023.1 ; Pus10_THUMP_arc ; Pus10 THUMP domain, archaeal
Probab=23.49 E-value=1.2e+02 Score=17.95 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred ccCCcEEEEcC
Q MBL3828645.1/1 3 VRRPDVVIVND 13 (57)
Q Consensus 3 ~RrPDViiV~d 13 (57)
..+||++|+-|
T Consensus 68 ~~~PDv~i~vD 78 (78)
T E1RIL6_METP4/7 68 FKRPDVVAVCN 78 (78)
T ss_pred CCCCCEEEEEC
No 68
>6HZ4_N Protein McrC; AAA+ superfamily, restriction enzyme, DNA BINDING PROTEIN; HET: GNP, GDP; 3.6A {Escherichia coli (strain K12)}
Probab=23.37 E-value=3.6e+02 Score=19.52 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=0.0 Template_Neff=10.000
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCC------------CCCCHHHHHHHHHHhCCc----ccceeC
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPP------------DKMDIKQERAYIRIAGDQ----TKLVEL 57 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~------------D~l~~~Q~~~Y~~IAG~~----~k~~~l 57 (57)
+||+++.. .+-..|++.||-. ..=+-.|.-+|..-.+.+ .+..++
T Consensus 242 ~PDi~l~~--------~~~~~vlDaKYk~~~~~~~~~~~~~~~~diyQ~~~Y~~~~~~~~~~~~~~~Ll 302 (348)
T 6HZ4_N 242 ETDITIRS--------SEKILIVDAKYYKSIFSRRMGTEKFHSQNLYQLMNYLWSLKPENGENIGGLLI 302 (348)
T ss_dssp ECSEEEEC--------SSCEEEECCCCCHHHHCC----CCCCCTTHHHHHHHHHHCCCSSCSCEEEEEE
T ss_pred cCcEEEEc--------CCeEEEEEEecChhhhhhhcCCccccchhHHHHHHHHHhcCccCCCCceEEEE
No 69
>6UT8_G McrBC 5-methylcytosine restriction system component; Endonuclease, AAA protein, GTPase, Methylation-dependent restriction, DNA BINDING PROTEIN; HET: GSP, GDP;{Thermococcus gammatolerans}
Probab=23.32 E-value=2e+02 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=0.0 Template_Neff=9.300
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCC-CCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPD-KMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D-~l~~~Q~~~Y~~IA 48 (57)
+||+++..+. +...|++.|+-.. .-+..+..-|+-+|
T Consensus 338 ~PDivi~~~~-------~~~~ViDaKyK~~~~~~~~~~DlyQ~~a 375 (458)
T 6UT8_G 338 KPDYVVRKGN-------TPVVVLDAKYRELKERIPSSDMLRQLYV 375 (458)
T ss_dssp CCSEEEESTT-------SCCEEECCCCCCCGGGSCCHHHHHHHHH
T ss_pred eCeEEEEeCC-------ccEEEEEeCCcccccCCCCHHHHHHHHH
No 70
>8A22_Bb uS2m; mitoribosome, ribosome, mitochondria, polytomella, fragmentation, rrna, evolution, translation; HET: K, ATP, MG; 2.91A {Polytomella magna}
Probab=22.98 E-value=1.3e+02 Score=21.08 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=0.0 Template_Neff=8.900
Q ss_pred CCccCCcEEEEcCC
Q MBL3828645.1/1 1 GMVRRPDVVIVNDP 14 (57)
Q Consensus 1 G~~RrPDViiV~d~ 14 (57)
++.+.||+||+-++
T Consensus 165 ~~~~~Pdlvii~~~ 178 (236)
T 8A22_Bb 165 GALSKLALVICLDP 178 (236)
T ss_pred CccccCCEEEEeCC
No 71
>PF18362.6 ; THB ; Tri-helix bundle domain
Probab=22.80 E-value=20 Score=17.53 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CCCCHHHHHHHHHHh
Q MBL3828645.1/1 34 DKMDIKQERAYIRIA 48 (57)
Q Consensus 34 D~l~~~Q~~~Y~~IA 48 (57)
+.+...+..+|++||
T Consensus 4 ~~l~~~~~~~~e~~~ 18 (34)
T H2LNL0_ORYLA/2 4 SILSKAPPSAFEKIA 18 (34)
T ss_pred HHHhcCCCChHHHHc
No 72
>PF15608.11 ; PELOTA_1 ; PELOTA RNA binding domain
Probab=22.66 E-value=1.5e+02 Score=19.03 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=0.0 Template_Neff=5.200
Q ss_pred cCCcEEEEcCCCCC
Q MBL3828645.1/1 4 RRPDVVIVNDPTKP 17 (57)
Q Consensus 4 RrPDViiV~d~~~~ 17 (57)
|.|+.|+|++++.+
T Consensus 36 R~P~~ilv~~~~~~ 49 (81)
T A8MM96_ALKOO/7 36 RVPWKILVRDYDNP 49 (81)
T ss_pred CCCcEEEEcCCCCc
No 73
>PF13101.11 ; DUF3945 ; Protein of unknown function (DUF3945)
Probab=22.54 E-value=1.4e+02 Score=16.74 Aligned_cols=17 Identities=0% Similarity=0.137 Sum_probs=0.0 Template_Neff=7.000
Q ss_pred eCCCCCCCHHHHHHHHH
Q MBL3828645.1/1 30 KFPPDKMDIKQERAYIR 46 (57)
Q Consensus 30 KFp~D~l~~~Q~~~Y~~ 46 (57)
++.|-.||+.|++++..
T Consensus 20 ~i~gv~Lt~~Q~~~L~~ 36 (50)
T I8XB01_9BACE/2 20 RIKEADLSEGKQMDFYG 36 (50)
T ss_pred eeCCeeCCHHHHHHHhC
No 74
>PF11496.13 ; HDA2-3 ; Class II histone deacetylase complex subunits 2 and 3
Probab=22.39 E-value=1.7e+02 Score=19.51 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCCHHHHHHHHHH
Q MBL3828645.1/1 35 KMDIKQERAYIRI 47 (57)
Q Consensus 35 ~l~~~Q~~~Y~~I 47 (57)
.+++.|++.|.++
T Consensus 11 ~ls~~q~~~Y~~~ 23 (274)
T Q6FSK5_CANGA/2 11 TMSLYQKELTDQI 23 (274)
T ss_pred CCCHHHHHHHHHH
No 75
>5YET_A Uncharacterized protein R354; MIMIVIRE, Cas4-like, nuclease, R354, NUCLEAR PROTEIN; 2.806A {Acanthamoeba polyphaga mimivirus}
Probab=22.25 E-value=2.5e+02 Score=21.54 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPD 34 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D 34 (57)
||-++.......-..+....++|||.|..
T Consensus 133 pDgi~~~~~~~~~~~~~~~~llEIK~p~~ 161 (399)
T 5YET_A 133 PDGICSKKANTGGLSKLVGRLLEIKFPFS 161 (399)
T ss_dssp CSEEECSBCTTSSEETTTTCEEEEECCSS
T ss_pred CCeEEecCCcCCCcccceeeEEEEECCCc
No 76
>7EEB_H Cation channel sperm-associated protein subunit epsilon; ion channel, membrane protein, calcium channel, protein complex, PROTEIN TRANSPORT; HET: BMA, 9Z9, NAG; 2.9A {Mus musculus}
Probab=22.14 E-value=76 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred EEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCcccceeC
Q MBL3828645.1/1 8 VVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQTKLVEL 57 (57)
Q Consensus 8 ViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~~k~~~l 57 (57)
+|++.+..--.|+||.....|+++|+..++++++-.-..+|=-.+.+.+|
T Consensus 280 avlvs~~~~f~T~DsF~T~~~l~vp~~~l~~~~~~~Vssaaf~~~~I~~L 329 (985)
T 7EEB_H 280 ALLATDQETFQTNDSFQTWTRVRAPPGILSDAQRHSLRDVIIFDQGTLFL 329 (985)
T ss_dssp EEEECSSCEEEESSSSSSCEECEECTTSSCHHHHTTEEEEEECSSCEEEE
T ss_pred EEEeeCCCeEEeCCCCcceEEEEeCCCcCCHHhcceeeeEEEeCCcEEEE
No 77
>3R5T_A Ferric vibriobactin ABC transporter, periplasmic ferric vibriobactin-binding protein; Iron-vibriobactin transport protein, Periplasmic transport protein, Iron-siderophore binding, METAL TRANSPORT; HET: VBN; 1.45A {Vibrio cholerae} SCOP: c.92.2.0, l.1.1.1
Probab=21.83 E-value=91 Score=21.51 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCC
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFP 32 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp 32 (57)
+||+||+......-...++++|-++ .|
T Consensus 86 ~PDlIi~~~~~~~~~~~~~~~l~~~-~p 112 (305)
T 3R5T_A 86 QPDLIVVSMIGADSARDQIPLLQAI-AP 112 (305)
T ss_dssp CCSEEEEESSSTTCCGGGHHHHHTT-SC
T ss_pred CCCEEEEeCCCCcchhhHHHHHHhh-CC
No 78
>1ZDB_A MINI PROTEIN A DOMAIN, Z38; IGG BINDING DOMAIN, PROTEIN A MIMIC; NMR {synthetic construct} SCOP: k.13.1.1
Probab=21.56 E-value=2e+02 Score=16.36 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=0.0 Template_Neff=4.100
Q ss_pred CCCCHHHHHHHHH
Q MBL3828645.1/1 34 DKMDIKQERAYIR 46 (57)
Q Consensus 34 D~l~~~Q~~~Y~~ 46 (57)
..|++.|+.+|..
T Consensus 21 pnLne~Qr~~fI~ 33 (38)
T 1ZDB_A 21 PNLNEEQRNAKIK 33 (38)
T ss_dssp SSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
No 79
>2FZL_A DNA repair protein RAD25, XPB; XPB, nucleotide excision repair, dna repair, DNA BINDING PROTEIN; 2.9A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=21.43 E-value=1.7e+02 Score=18.12 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=0.0 Template_Neff=12.100
Q ss_pred CCCHHHHHHHHHHhC
Q MBL3828645.1/1 35 KMDIKQERAYIRIAG 49 (57)
Q Consensus 35 ~l~~~Q~~~Y~~IAG 49 (57)
.+++.|++.|..+..
T Consensus 35 ~l~~~~~~~y~~~~~ 49 (219)
T 2FZL_A 35 PLAEDERVEYEKREK 49 (219)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
No 80
>PF13439.11 ; Glyco_transf_4 ; Glycosyltransferase Family 4
Probab=21.29 E-value=1.4e+02 Score=16.36 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=0.0 Template_Neff=13.600
Q ss_pred cCCcEEEEcCC
Q MBL3828645.1/1 4 RRPDVVIVNDP 14 (57)
Q Consensus 4 RrPDViiV~d~ 14 (57)
++||+|++..+
T Consensus 70 ~~~d~i~~~~~ 80 (166)
T L0L008_METHD/3 70 YNYDIIHAHGH 80 (166)
T ss_pred CCCCEEEecCh
No 81
>PF07832.16 ; Bse634I ; Cfr10I/Bse634I restriction endonuclease
Probab=20.86 E-value=1.1e+02 Score=23.66 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=0.0 Template_Neff=5.900
Q ss_pred CcEEEEcCCCCCCCCCch-hhEEEeeCCCCCCCHHHHHHHHHHhC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNI-KQVVEIKFPPDKMDIKQERAYIRIAG 49 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi-~~vVE~KFp~D~l~~~Q~~~Y~~IAG 49 (57)
||.|||..+...-..+|. ...+=-+++.-+.+... .+|..+.|
T Consensus 133 PD~viv~~~~~~~~~~~~~~~~~~~~i~~ls~~~~~-~~y~~l~G 176 (285)
T T2CX_CITFR/1-2 133 PDFSIIDIRGRREELKSMLKDISFSNISLSTISEID-NLYKNFID 176 (285)
T ss_pred CCEEEEEcCCcchHHHHhhhhhhccchhhCCHHHHH-HHHHHHhh
No 82
>1CFR_A RESTRICTION ENDONUCLEASE; RESTRICTION ENDONUCLEASE, RESTRICTION ENZYME; 2.15A {Citrobacter freundii} SCOP: c.52.1.7
Probab=20.81 E-value=2.1e+02 Score=22.15 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=0.0 Template_Neff=6.000
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCCCCCHHHHH----HHHHHhC
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPDKMDIKQER----AYIRIAG 49 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D~l~~~Q~~----~Y~~IAG 49 (57)
||.|||.-++..+...+...+.++.= ++..... +|..+.|
T Consensus 133 PD~Viv~~~~~~~~~~~~~~~~~i~~----l~~~~l~~l~~~y~~l~G 176 (285)
T 1CFR_A 133 PDFSIIDIRGRREELKSMLKDISFSN----ISLSTISEIDNLYKNFID 176 (285)
T ss_dssp CSEEEEECTTCHHHHHHHTTTCCSTT----CCHHHHHHHHHGGGGGTT
T ss_pred CCEEEEEcCCcchhhHhccccCCccc----CCHHHHHHHHHHHHHhch
No 83
>PF09563.15 ; RE_LlaJI ; LlaJI restriction endonuclease
Probab=20.73 E-value=1.9e+02 Score=21.16 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=0.0 Template_Neff=9.600
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCCCC-------CCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPPDK-------MDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~D~-------l~~~Q~~~Y~~IA 48 (57)
+||+++.. ........|+..|+-.-. -......-|+.+|
T Consensus 265 ~PDivi~~-----~~~~~~~~IiDaKYk~~~~~~~~~~~~~~~~DiyQ~~~ 310 (362)
T Q81H81_BACCR/5 265 RPDIIKTY-----IDIQRYFLILDAKYYNIRFKEGDLKGNPGVNDIAKQLL 310 (362)
T ss_pred CCeEEEEE-----eCCccEEEEEEcCccceeecCCCccCCCChHHHHHHHH
No 84
>3LHS_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, lipoprotein, binding protein, TRANSPORT PROTEIN; HET: GOL, SF8; 1.3A {Staphylococcus aureus subsp. aureus strain} SCOP: c.92.2.0, l.1.1.1
Probab=20.59 E-value=2.1e+02 Score=19.27 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=0.0 Template_Neff=11.200
Q ss_pred CCcEEEEcCCCCCCCCCchhhEEEeeCCC--CCCCHHHHHHHHHHh
Q MBL3828645.1/1 5 RPDVVIVNDPTKPPTQDNIKQVVEIKFPP--DKMDIKQERAYIRIA 48 (57)
Q Consensus 5 rPDViiV~d~~~~p~qdNi~~vVE~KFp~--D~l~~~Q~~~Y~~IA 48 (57)
.||+||............++...-+-+-. ..--+.-.+.+..|+
T Consensus 85 ~PDlii~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~lg 130 (296)
T 3LHS_A 85 KPDLIIADSSRHKGINKELNKIAPTLSLKSFDGDYKQNINSFKTIA 130 (296)
T ss_dssp CCSEEEEETTTTTTTHHHHHHHSCEEEECSTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCccchhHHHHHHHhCCEEEEecCCCCHHHHHHHHHHHH
No 85
>1ZP7_B Recombination protein U; recombination, DNA-binding protein, resolvase, DNA BINDING PROTEIN; 2.25A {Bacillus subtilis} SCOP: c.52.1.28
Probab=20.58 E-value=5.1e+02 Score=18.37 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CcEEEEcCCCCCCCCCchhhEEEeeCCCC-------CCCHHHHHHHHHHh
Q MBL3828645.1/1 6 PDVVIVNDPTKPPTQDNIKQVVEIKFPPD-------KMDIKQERAYIRIA 48 (57)
Q Consensus 6 PDViiV~d~~~~p~qdNi~~vVE~KFp~D-------~l~~~Q~~~Y~~IA 48 (57)
||++.+.+ +.--.+|+|-... .+++.|.+.-.+++
T Consensus 87 ~D~i~~~~--------g~~~~~E~K~t~~~~~~~~~~i~~~Q~~~L~~~~ 128 (206)
T 1ZP7_B 87 TDYNGIYK--------GRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVK 128 (206)
T ss_dssp CSEEEEET--------TEEEEEEEEECCCSSEEEGGGSCHHHHHHHHHHH
T ss_pred CCEEEEEC--------CeEEEEEEeeCCCCCccchhhCCHHHHHHHHHHH
No 86
>PF18569.6 ; Thioredoxin_16 ; Thioredoxin-like domain
Probab=20.53 E-value=1.3e+02 Score=18.55 Aligned_cols=13 Identities=54% Similarity=0.971 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CcEEEEcCCCCCC
Q MBL3828645.1/1 6 PDVVIVNDPTKPP 18 (57)
Q Consensus 6 PDViiV~d~~~~p 18 (57)
.|+||..||+.+|
T Consensus 4 ~diVI~a~P~~PP 16 (92)
T F7ELU9_MONDO/1 4 KDIVINANPTVPP 16 (92)
T ss_pred eEEEEEcCCCChh
No 87
>9E5C_3m Chaperone protein DNAJ, putative; flagella, microtubule, MOTOR PROTEIN; HET: ZN, MG, GDP, GTP, ATP, ADP; 3.2A {Trypanosoma brucei brucei TREU927}
Probab=20.44 E-value=5.1e+02 Score=18.07 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=0.0 Template_Neff=10.700
Q ss_pred cEEEEcCCCCC------CCCCchhhEEEeeCCCCCCCHHHHHHHHHHhCCc
Q MBL3828645.1/1 7 DVVIVNDPTKP------PTQDNIKQVVEIKFPPDKMDIKQERAYIRIAGDQ 51 (57)
Q Consensus 7 DViiV~d~~~~------p~qdNi~~vVE~KFp~D~l~~~Q~~~Y~~IAG~~ 51 (57)
+++++.....+ ....||---+.|.||. .++..|++.+++|...+
T Consensus 270 ~~~~i~g~G~p~~~~~~~~~Gdl~v~~~v~~P~-~l~~~~~~~l~~~~~~~ 319 (319)
T 9E5C_3m 270 YSRRVVGQGLPRNDEPSNPRGDLIVECDTTFPG-FLTLEQKSELSRILDAK 319 (319)
T ss_pred cEEEECCCCCccCCCCCCCCCCEEEEEEEECCc-CCCHHHHHHHHHHhccC